Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:43:13 (24732): wrapper (7.7.26015): starting
00:43:13 (24732): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 00:43:13] Arguments: --nthreads 8
[2025-11-27 00:43:13] Threads: 8
[2025-11-27 00:43:13] Checking for CVMFS
[2025-11-27 00:43:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:43:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:43:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:43:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:43:15] 2.11.2.0 570 285883 135840 153340 3 85 23990149 25165825 1288 130560 9 124486709 99.876 80822821 2940 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 00:43:15] CVMFS is ok
[2025-11-27 00:43:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:43:15] Checking for apptainer binary...
[2025-11-27 00:43:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:43:15] Running /usr/bin/apptainer --version
[2025-11-27 00:43:16] apptainer version 1.3.2-1.el7
[2025-11-27 00:43:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:43:26] cg-vwn366.simple-grid.lan
[2025-11-27 00:43:26] apptainer works
[2025-11-27 00:43:26] Set ATHENA_PROC_NUMBER=8
[2025-11-27 00:43:26] Set ATHENA_CORE_NUMBER=8
[2025-11-27 00:43:26] Starting ATLAS job with PandaID=6895357708
[2025-11-27 00:43:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 00:21:30]  *** The last 200 lines of the pilot log: ***
[2025-11-28 00:21:30] 2025-11-27 23:20:07,483 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:21:30] 2025-11-27 23:20:09,176 | INFO     | time since job start (84796s) is within the limit (172800.0s)
[2025-11-28 00:21:30] 2025-11-27 23:20:09,991 | INFO     | monitor loop #5708: job 0:6895357708 is in state 'finished'
[2025-11-28 00:21:30] 2025-11-27 23:20:09,992 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:21:30] 2025-11-27 23:20:11,187 | INFO     | time since job start (84798s) is within the limit (172800.0s)
[2025-11-28 00:21:30] 2025-11-27 23:20:12,503 | INFO     | monitor loop #5709: job 0:6895357708 is in state 'finished'
[2025-11-28 00:21:30] 2025-11-27 23:20:12,503 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:21:30] 2025-11-27 23:20:13,193 | INFO     | time since job start (84800s) is within the limit (172800.0s)
[2025-11-28 00:21:30] 2025-11-27 23:20:15,009 | INFO     | monitor loop #5710: job 0:6895357708 is in state 'finished'
[2025-11-28 00:21:30] 2025-11-27 23:20:15,009 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:21:30] 2025-11-27 23:20:15,203 | INFO     | time since job start (84802s) is within the limit (172800.0s)
[2025-11-28 00:21:30] 2025-11-27 23:20:16,393 | INFO     | PID=28527 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 00:21:30] 2025-11-27 23:20:16,393 | INFO     | .. there are 9 such processes running
[2025-11-28 00:21:30] 2025-11-27 23:20:17,397 | INFO     | time since job start (84804s) is within the limit (172800.0s)
[2025-11-28 00:21:30] 2025-11-27 23:20:17,515 | INFO     | monitor loop #5711: job 0:6895357708 is in state 'finished'
[2025-11-28 00:21:30] 2025-11-27 23:20:17,516 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:21:30] 2025-11-27 23:20:17,832 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 00:21:30] 2025-11-27 23:20:17,833 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 00:21:30] 2025-11-27 23:20:17,835 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6895357708/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 00:21:30] 2025-11-27 23:20:17,835 | INFO     | extracted standard info from prmon json
[2025-11-28 00:21:30] 2025-11-27 23:20:17,835 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 00:21:30] 2025-11-27 23:20:17,835 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 00:21:30] 2025-11-27 23:20:17,871 | INFO     | fitting pss+swap vs Time
[2025-11-28 00:21:30] 2025-11-27 23:20:17,873 | INFO     | sum of square deviations: 816693768362.866
[2025-11-28 00:21:30] 2025-11-27 23:20:17,983 | INFO     | sum of deviations: 3469844544801.3604
[2025-11-28 00:21:30] 2025-11-27 23:20:17,984 | INFO     | mean x: 1764243415.08979
[2025-11-28 00:21:30] 2025-11-27 23:20:17,984 | INFO     | mean y: 2842798.053584359
[2025-11-28 00:21:30] 2025-11-27 23:20:17,984 | INFO     | intersect: -7492806889.371377
[2025-11-28 00:21:30] 2025-11-27 23:20:17,986 | INFO     | chi2: 21.117657505724292
[2025-11-28 00:21:30] 2025-11-27 23:20:17,988 | INFO     | sum of square deviations: 807855624451.9062
[2025-11-28 00:21:30] 2025-11-27 23:20:18,045 | INFO     | sum of deviations: 3956405263560.1523
[2025-11-28 00:21:30] 2025-11-27 23:20:18,046 | INFO     | mean x: 1764243262.59375
[2025-11-28 00:21:30] 2025-11-27 23:20:18,046 | INFO     | mean y: 2851191.5297965114
[2025-11-28 00:21:30] 2025-11-27 23:20:18,046 | INFO     | intersect: -8637382433.21238
[2025-11-28 00:21:30] 2025-11-27 23:20:18,048 | INFO     | chi2: 17.559218483338878
[2025-11-28 00:21:30] 2025-11-27 23:20:18,048 | INFO     | current chi2=17.559218483338878 (change=16.8505385666987 %)
[2025-11-28 00:21:30] 2025-11-27 23:20:18,048 | INFO     | right removable region: 1375
[2025-11-28 00:21:30] 2025-11-27 23:20:18,050 | INFO     | sum of square deviations: 807854706401.9062
[2025-11-28 00:21:30] 2025-11-27 23:20:18,101 | INFO     | sum of deviations: 2883055001699.253
[2025-11-28 00:21:30] 2025-11-27 23:20:18,101 | INFO     | mean x: 1764243567.59375
[2025-11-28 00:21:30] 2025-11-27 23:20:18,101 | INFO     | mean y: 2852921.726744186
[2025-11-28 00:21:30] 2025-11-27 23:20:18,101 | INFO     | intersect: -6293342670.697537
[2025-11-28 00:21:30] 2025-11-27 23:20:18,103 | INFO     | chi2: 16.265401184062306
[2025-11-28 00:21:30] 2025-11-27 23:20:18,103 | INFO     | current chi2=16.265401184062306 (change=22.977246980858087 %)
[2025-11-28 00:21:30] 2025-11-27 23:20:18,103 | INFO     | left removable region: 10
[2025-11-28 00:21:30] 2025-11-27 23:20:18,105 | INFO     | sum of square deviations: 788634828523.6404
[2025-11-28 00:21:30] 2025-11-27 23:20:18,188 | INFO     | sum of deviations: 2979876275672.7456
[2025-11-28 00:21:30] 2025-11-27 23:20:18,188 | INFO     | mean x: 1764243537.102564
[2025-11-28 00:21:30] 2025-11-27 23:20:18,188 | INFO     | mean y: 2871772.73040293
[2025-11-28 00:21:30] 2025-11-27 23:20:18,188 | INFO     | intersect: -6663366225.612461
[2025-11-28 00:21:30] 2025-11-27 23:20:18,190 | INFO     | chi2: 8.578404101330344
[2025-11-28 00:21:30] 2025-11-27 23:20:18,190 | INFO     | current memory leak: 3.78 B/s (using 1365 data points, chi2=8.58)
[2025-11-28 00:21:30] 2025-11-27 23:20:18,192 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-28 00:21:30] 2025-11-27 23:20:18,192 | INFO     | ..............................
[2025-11-28 00:21:30] 2025-11-27 23:20:18,192 | INFO     | . Timing measurements:
[2025-11-28 00:21:30] 2025-11-27 23:20:18,192 | INFO     | . get job = 0 s
[2025-11-28 00:21:30] 2025-11-27 23:20:18,192 | INFO     | . initial setup = 5 s
[2025-11-28 00:21:30] 2025-11-27 23:20:18,192 | INFO     | . payload setup = 151 s
[2025-11-28 00:21:30] 2025-11-27 23:20:18,192 | INFO     | . stage-in = 0 s
[2025-11-28 00:21:30] 2025-11-27 23:20:18,192 | INFO     | . payload execution = 84338 s
[2025-11-28 00:21:30] 2025-11-27 23:20:18,193 | INFO     | . stage-out = 4 s
[2025-11-28 00:21:30] 2025-11-27 23:20:18,193 | INFO     | . log creation = 1 s
[2025-11-28 00:21:30] 2025-11-27 23:20:18,193 | INFO     | ..............................
[2025-11-28 00:21:30] 2025-11-27 23:20:18,334 | INFO     | 
[2025-11-28 00:21:30] 2025-11-27 23:20:18,334 | INFO     | job summary report
[2025-11-28 00:21:30] 2025-11-27 23:20:18,334 | INFO     | --------------------------------------------------
[2025-11-28 00:21:30] 2025-11-27 23:20:18,335 | INFO     | PanDA job id: 6895357708
[2025-11-28 00:21:30] 2025-11-27 23:20:18,335 | INFO     | task id: 47556137
[2025-11-28 00:21:30] 2025-11-27 23:20:18,335 | INFO     | errors: (none)
[2025-11-28 00:21:30] 2025-11-27 23:20:18,335 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 00:21:30] 2025-11-27 23:20:18,335 | INFO     | pilot state: finished 
[2025-11-28 00:21:30] 2025-11-27 23:20:18,335 | INFO     | transexitcode: 0
[2025-11-28 00:21:30] 2025-11-27 23:20:18,335 | INFO     | exeerrorcode: 0
[2025-11-28 00:21:30] 2025-11-27 23:20:18,335 | INFO     | exeerrordiag: 
[2025-11-28 00:21:30] 2025-11-27 23:20:18,335 | INFO     | exitcode: 0
[2025-11-28 00:21:30] 2025-11-27 23:20:18,335 | INFO     | exitmsg: OK
[2025-11-28 00:21:30] 2025-11-27 23:20:18,335 | INFO     | cpuconsumptiontime: 319364 s
[2025-11-28 00:21:30] 2025-11-27 23:20:18,335 | INFO     | nevents: 1000
[2025-11-28 00:21:30] 2025-11-27 23:20:18,336 | INFO     | neventsw: 0
[2025-11-28 00:21:30] 2025-11-27 23:20:18,336 | INFO     | pid: 2995
[2025-11-28 00:21:30] 2025-11-27 23:20:18,336 | INFO     | pgrp: 2995
[2025-11-28 00:21:30] 2025-11-27 23:20:18,336 | INFO     | corecount: 8
[2025-11-28 00:21:30] 2025-11-27 23:20:18,336 | INFO     | event service: False
[2025-11-28 00:21:30] 2025-11-27 23:20:18,336 | INFO     | sizes: {0: 2284088, 1: 2284343, 2: 2284343, 12: 2284371, 23: 2284399, 34: 2284427, 44: 2284583, 55: 2284611, 66: 2284639, 77: 2284667, 87: 2284723, 98: 2237150, 99
[2025-11-28 00:21:30] 2025-11-27 23:20:18,336 | INFO     | --------------------------------------------------
[2025-11-28 00:21:30] 2025-11-27 23:20:18,336 | INFO     | 
[2025-11-28 00:21:30] 2025-11-27 23:20:18,336 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-28 00:21:30] 2025-11-27 23:20:18,420 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 00:21:30] 2025-11-27 23:20:18,420 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 00:21:30] 2025-11-27 23:20:18,420 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 00:21:30] 2025-11-27 23:20:18,420 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 00:21:30] 2025-11-27 23:20:18,420 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 00:21:30] 2025-11-27 23:20:18,420 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 00:21:30] 2025-11-27 23:20:18,421 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 00:21:30] 2025-11-27 23:20:18,421 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 00:21:30] 2025-11-27 23:20:18,421 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 00:21:30] 2025-11-27 23:20:18,421 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 00:21:30] 2025-11-27 23:20:18,421 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 00:21:30] 2025-11-27 23:20:18,421 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 00:21:30] 2025-11-27 23:20:18,421 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 00:21:30] 2025-11-27 23:20:18,421 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 00:21:30] 2025-11-27 23:20:18,421 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 00:21:30] 2025-11-27 23:20:18,421 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 00:21:30] 2025-11-27 23:20:18,421 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 00:21:30] 2025-11-27 23:20:18,421 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 00:21:30] 2025-11-27 23:20:18,422 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 00:21:30] 2025-11-27 23:20:18,422 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 00:21:30] 2025-11-27 23:20:18,422 | INFO     | job 6895357708 has completed (purged errors)
[2025-11-28 00:21:30] 2025-11-27 23:20:18,422 | INFO     | overall cleanup function is called
[2025-11-28 00:21:30] 2025-11-27 23:20:19,437 | INFO     | --- collectZombieJob: --- 10, [2995]
[2025-11-28 00:21:30] 2025-11-27 23:20:19,438 | INFO     | zombie collector waiting for pid 2995
[2025-11-28 00:21:30] 2025-11-27 23:20:19,438 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 00:21:30] 2025-11-27 23:20:19,438 | INFO     | collected zombie processes
[2025-11-28 00:21:30] 2025-11-27 23:20:19,438 | INFO     | will attempt to kill all subprocesses of pid=2995
[2025-11-28 00:21:30] 2025-11-27 23:20:19,537 | INFO     | process IDs to be killed: [2995] (in reverse order)
[2025-11-28 00:21:30] 2025-11-27 23:20:20,261 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 00:21:30] 2025-11-27 23:20:20,262 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 00:21:30] 2025-11-27 23:20:20,265 | INFO     | did not find any defunct processes belonging to 2995
[2025-11-28 00:21:30] 2025-11-27 23:20:20,267 | INFO     | did not find any defunct processes belonging to 2995
[2025-11-28 00:21:30] 2025-11-27 23:20:20,314 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 00:21:30] 2025-11-27 23:20:20,314 | INFO     | ready for new job
[2025-11-28 00:21:30] 2025-11-27 23:20:20,314 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 00:21:30] 2025-11-27 23:20:20,319 | INFO     | ***************************************
[2025-11-28 00:21:30] 2025-11-27 23:20:20,319 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 00:21:30] 2025-11-27 23:20:20,319 | INFO     | ***************************************
[2025-11-28 00:21:30] 2025-11-27 23:20:20,319 | INFO     | 
[2025-11-28 00:21:30] 2025-11-27 23:20:20,320 | INFO     | pilot is running in a VM
[2025-11-28 00:21:30] 2025-11-27 23:20:20,320 | INFO     | architecture information:
[2025-11-28 00:21:30] 2025-11-27 23:20:20,341 | INFO     | executing command: cat /etc/os-release
[2025-11-28 00:21:30] 2025-11-27 23:20:20,554 | INFO     | cat /etc/os-release:
[2025-11-28 00:21:30] NAME="CentOS Linux"
[2025-11-28 00:21:30] VERSION="7 (Core)"
[2025-11-28 00:21:30] ID="centos"
[2025-11-28 00:21:30] ID_LIKE="rhel fedora"
[2025-11-28 00:21:30] VERSION_ID="7"
[2025-11-28 00:21:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 00:21:30] ANSI_COLOR="0;31"
[2025-11-28 00:21:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 00:21:30] HOME_URL="https://www.centos.org/"
[2025-11-28 00:21:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 00:21:30] 
[2025-11-28 00:21:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 00:21:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 00:21:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 00:21:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 00:21:30] 
[2025-11-28 00:21:30] 2025-11-27 23:20:20,554 | INFO     | ***************************************
[2025-11-28 00:21:30] 2025-11-27 23:20:21,058 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-28 00:21:30] 2025-11-27 23:20:21,354 | INFO     | sufficient remaining disk space (494794702848 B)
[2025-11-28 00:21:30] 2025-11-27 23:20:21,354 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 00:21:30] 2025-11-27 23:20:21,355 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 00:21:30] 2025-11-27 23:20:21,355 | INFO     | update_server=False
[2025-11-28 00:21:30] 2025-11-27 23:20:21,355 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 00:21:30] 2025-11-27 23:20:21,355 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:21:30] 2025-11-27 23:20:21,355 | INFO     | aborting loop
[2025-11-28 00:21:30] 2025-11-27 23:20:21,355 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 00:21:30] 2025-11-27 23:20:21,368 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 00:21:30] 2025-11-27 23:20:21,488 | INFO     | all data control threads have been joined
[2025-11-28 00:21:30] 2025-11-27 23:20:21,998 | INFO     | all payload control threads have been joined
[2025-11-28 00:21:30] 2025-11-27 23:20:22,067 | INFO     | all job control threads have been joined
[2025-11-28 00:21:30] 2025-11-27 23:20:22,361 | INFO     | [job] retrieve thread has finished
[2025-11-28 00:21:30] 2025-11-27 23:20:22,361 | INFO     | [job] job monitor thread has finished
[2025-11-28 00:21:30] 2025-11-27 23:20:22,495 | INFO     | [data] control thread has finished
[2025-11-28 00:21:30] 2025-11-27 23:20:22,964 | INFO     | [payload] failed_post thread has finished
[2025-11-28 00:21:30] 2025-11-27 23:20:23,005 | INFO     | [payload] control thread has finished
[2025-11-28 00:21:30] 2025-11-27 23:20:23,074 | INFO     | [job] control thread has finished
[2025-11-28 00:21:30] 2025-11-27 23:20:23,075 | INFO     | [payload] validate_post thread has finished
[2025-11-28 00:21:30] 2025-11-27 23:20:23,294 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 00:21:30] 2025-11-27 23:20:23,306 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 00:21:30] 2025-11-27 23:20:23,357 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:21:30] 2025-11-27 23:20:23,376 | INFO     | [data] copytool_out thread has finished
[2025-11-28 00:21:30] 2025-11-27 23:20:23,402 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 00:21:30] 2025-11-27 23:20:23,417 | INFO     | [job] validate thread has finished
[2025-11-28 00:21:30] 2025-11-27 23:20:23,541 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 00:21:30] 2025-11-27 23:20:23,706 | INFO     | [data] copytool_in thread has finished
[2025-11-28 00:21:30] 2025-11-27 23:20:24,363 | INFO     | [job] queue monitor thread has finished
[2025-11-28 00:21:30] 2025-11-27 23:20:25,365 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 00:21:30] 2025-11-27 23:20:50,630 | INFO     | PID=28527 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 00:21:30] 2025-11-27 23:20:50,631 | INFO     | .. there are 9 such processes running
[2025-11-28 00:21:30] 2025-11-27 23:20:50,632 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 00:21:30] 2025-11-27 23:20:50,632 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 00:21:30] 2025-11-27 23:20:50,632 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 00:21:30] 2025-11-27 23:21:21,320 | INFO     | [monitor] cgroup control has ended
[2025-11-28 00:21:30] 2025-11-27 23:21:22,328 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139790826977088)>', '<ExcThread(monitor, started 139790154450688)>']
[2025-11-28 00:21:30] 2025-11-27 23:21:22,819 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 00:21:30] 2025-11-27 23:21:22,820 | INFO     | [monitor] control thread has ended
[2025-11-28 00:21:30] 2025-11-27 23:21:27,353 | INFO     | all workflow threads have been joined
[2025-11-28 00:21:30] 2025-11-27 23:21:27,354 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 00:21:30] 2025-11-27 23:21:27,354 | INFO     | traces error code: 0
[2025-11-28 00:21:30] 2025-11-27 23:21:27,354 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 00:21:30] 2025-11-27 23:21:27,658 [wrapper] ==== pilot stdout END ====
[2025-11-28 00:21:30] 2025-11-27 23:21:27,698 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 00:21:30] 2025-11-27 23:21:27,749 [wrapper] pilotpid: 28527
[2025-11-28 00:21:30] 2025-11-27 23:21:27,795 [wrapper] Pilot exit status: 0
[2025-11-28 00:21:30] 2025-11-27 23:21:28,127 [wrapper] pandaids: 6895357708
[2025-11-28 00:21:30] 2025-11-27 23:21:28,974 [wrapper] cleanup supervisor_pilot  8491 28528
[2025-11-28 00:21:30] 2025-11-27 23:21:29,079 [wrapper] Test setup, not cleaning
[2025-11-28 00:21:30] 2025-11-27 23:21:29,117 [wrapper] apfmon messages muted
[2025-11-28 00:21:30] 2025-11-27 23:21:29,153 [wrapper] ==== wrapper stdout END ====
[2025-11-28 00:21:30] 2025-11-27 23:21:29,181 [wrapper] ==== wrapper stderr END ====
[2025-11-28 00:21:30]  *** Error codes and diagnostics ***
[2025-11-28 00:21:30]     "exeErrorCode": 0,
[2025-11-28 00:21:30]     "exeErrorDiag": "",
[2025-11-28 00:21:30]     "pilotErrorCode": 0,
[2025-11-28 00:21:30]     "pilotErrorDiag": "",
[2025-11-28 00:21:30]  *** Listing of results directory ***
[2025-11-28 00:21:30] total 1320096
[2025-11-28 00:21:30] -rw-r--r--. 1 boinc boinc    576529 Nov 23 12:59 pilot3.tar.gz
[2025-11-28 00:21:30] -rwx------. 1 boinc boinc     36292 Nov 23 13:05 runpilot2-wrapper.sh
[2025-11-28 00:21:30] -rw-r--r--. 1 boinc boinc      5112 Nov 23 13:05 queuedata.json
[2025-11-28 00:21:30] -rw-r--r--. 1 boinc boinc       100 Nov 27 00:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 00:21:30] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 00:43 run_atlas
[2025-11-28 00:21:30] -rw-r--r--. 1 boinc boinc       105 Nov 27 00:43 job.xml
[2025-11-28 00:21:30] -rw-r--r--. 1 boinc boinc      6391 Nov 27 00:43 init_data.xml
[2025-11-28 00:21:30] -rw-r--r--. 2 boinc boinc 409711379 Nov 27 00:43 EVNT.47483658._000723.pool.root.1
[2025-11-28 00:21:30] drwxrwx--x. 2 boinc boinc        68 Nov 27 00:43 shared
[2025-11-28 00:21:30] -rw-r--r--. 2 boinc boinc    590095 Nov 27 00:43 input.tar.gz
[2025-11-28 00:21:30] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:43 start_atlas.sh
[2025-11-28 00:21:30] -rw-r--r--. 1 boinc boinc         0 Nov 27 00:43 boinc_lockfile
[2025-11-28 00:21:30] -rw-r--r--. 1 boinc boinc      2786 Nov 27 00:43 pandaJob.out
[2025-11-28 00:21:30] -rw-------. 1 boinc boinc    991538 Nov 27 00:46 agis_schedconf.cvmfs.json
[2025-11-28 00:21:30] drwx------. 5 boinc boinc      4096 Nov 27 00:46 pilot3
[2025-11-28 00:21:30] -rw-r--r--. 1 boinc boinc       533 Nov 27 23:57 boinc_task_state.xml
[2025-11-28 00:21:30] -rw-------. 1 boinc boinc 910731600 Nov 28 00:17 HITS.47556137._007189.pool.root.1
[2025-11-28 00:21:30] -rw-------. 1 boinc boinc      1029 Nov 28 00:18 memory_monitor_summary.json
[2025-11-28 00:21:30] -rw-------. 1 boinc boinc   1516240 Nov 28 00:18 agis_ddmendpoints.agis.ALL.json
[2025-11-28 00:21:30] -rw-------. 1 boinc boinc   2450067 Nov 28 00:18 log.47556137._007189.job.log.tgz.1
[2025-11-28 00:21:30] -rw-------. 1 boinc boinc      8630 Nov 28 00:20 heartbeat.json
[2025-11-28 00:21:30] -rw-------. 1 boinc boinc        95 Nov 28 00:20 pilot_heartbeat.json
[2025-11-28 00:21:30] -rw-r--r--. 1 boinc boinc      8192 Nov 28 00:21 boinc_mmap_file
[2025-11-28 00:21:30] -rw-r--r--. 1 boinc boinc        29 Nov 28 00:21 wrapper_checkpoint.txt
[2025-11-28 00:21:30] -rw-------. 1 boinc boinc      4884 Nov 28 00:21 pilotlog.txt
[2025-11-28 00:21:30] -rw-------. 1 boinc boinc  11265318 Nov 28 00:21 log.47556137._007189.job.log.1
[2025-11-28 00:21:30] -rw-------. 1 boinc boinc       353 Nov 28 00:21 output.list
[2025-11-28 00:21:30] -rw-r--r--. 1 boinc boinc       620 Nov 28 00:21 runtime_log
[2025-11-28 00:21:30] -rw-------. 1 boinc boinc  13731840 Nov 28 00:21 result.tar.gz
[2025-11-28 00:21:30] -rw-r--r--. 1 boinc boinc      8817 Nov 28 00:21 runtime_log.err
[2025-11-28 00:21:30] -rw-------. 1 boinc boinc       662 Nov 28 00:21 5ItLDmz1Nh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxWIKDmXHWGBn.diag
[2025-11-28 00:21:30] -rw-r--r--. 1 boinc boinc     21441 Nov 28 00:21 stderr.txt
[2025-11-28 00:21:31] HITS file was successfully produced:
[2025-11-28 00:21:31] -rw-------. 1 boinc boinc 910731600 Nov 28 00:17 shared/HITS.pool.root.1
[2025-11-28 00:21:31]  *** Contents of shared directory: ***
[2025-11-28 00:21:31] total 1303508
[2025-11-28 00:21:31] -rw-r--r--. 2 boinc boinc 409711379 Nov 27 00:43 ATLAS.root_0
[2025-11-28 00:21:31] -rw-r--r--. 2 boinc boinc    590095 Nov 27 00:43 input.tar.gz
[2025-11-28 00:21:31] -rw-r--r--. 2 boinc boinc     15847 Nov 27 00:43 start_atlas.sh
[2025-11-28 00:21:31] -rw-------. 1 boinc boinc 910731600 Nov 28 00:17 HITS.pool.root.1
[2025-11-28 00:21:31] -rw-------. 1 boinc boinc  13731840 Nov 28 00:21 result.tar.gz
00:21:32 (24732): run_atlas exited; CPU time 319905.292821
00:21:32 (24732): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN