Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:19:40 (1580496): wrapper (7.7.26015): starting
17:19:40 (1580496): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 17:19:40] Arguments: --nthreads 3
[2025-11-26 17:19:40] Threads: 3
[2025-11-26 17:19:40] Checking for CVMFS
[2025-11-26 17:19:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:19:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:19:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:19:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:19:40] 2.9.2.0 28796 11504 94632 153326 3 81 30825142 36864000 0 130560 1 4310268 99.938 578922 748 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 17:19:40] CVMFS is ok
[2025-11-26 17:19:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:19:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:19:40] Further information can be found at the LHC@home message board.
[2025-11-26 17:19:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:19:40] Checking for apptainer binary...
[2025-11-26 17:19:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:19:40] Running /usr/bin/apptainer --version
[2025-11-26 17:19:40] apptainer version 1.4.1-1.1
[2025-11-26 17:19:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:19:40] thA331b
[2025-11-26 17:19:40] apptainer works
[2025-11-26 17:19:40] Set ATHENA_PROC_NUMBER=3
[2025-11-26 17:19:40] Set ATHENA_CORE_NUMBER=3
[2025-11-26 17:19:40] Starting ATLAS job with PandaID=6895351129
[2025-11-26 17:19:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 01:07:31]  *** The last 200 lines of the pilot log: ***
[2025-11-27 01:07:31] 2025-11-27 00:06:59,705 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 01:07:31] 2025-11-27 00:06:59,705 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 01:07:31] 2025-11-27 00:06:59,706 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 01:07:31] 2025-11-27 00:06:59,706 | INFO     | job 6895351129 has completed (purged errors)
[2025-11-27 01:07:31] 2025-11-27 00:06:59,706 | INFO     | overall cleanup function is called
[2025-11-27 01:07:31] 2025-11-27 00:07:00,714 | INFO     | --- collectZombieJob: --- 10, [1590663]
[2025-11-27 01:07:31] 2025-11-27 00:07:00,715 | INFO     | zombie collector waiting for pid 1590663
[2025-11-27 01:07:31] 2025-11-27 00:07:00,715 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 01:07:31] 2025-11-27 00:07:00,715 | INFO     | collected zombie processes
[2025-11-27 01:07:31] 2025-11-27 00:07:00,715 | INFO     | will attempt to kill all subprocesses of pid=1590663
[2025-11-27 01:07:31] 2025-11-27 00:07:00,758 | INFO     | process IDs to be killed: [1590663] (in reverse order)
[2025-11-27 01:07:31] 2025-11-27 00:07:00,782 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 01:07:31] 2025-11-27 00:07:00,782 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 01:07:31] 2025-11-27 00:07:00,783 | INFO     | did not find any defunct processes belonging to 1590663
[2025-11-27 01:07:31] 2025-11-27 00:07:00,784 | INFO     | did not find any defunct processes belonging to 1590663
[2025-11-27 01:07:31] 2025-11-27 00:07:00,785 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 01:07:31] 2025-11-27 00:07:00,785 | INFO     | ready for new job
[2025-11-27 01:07:31] 2025-11-27 00:07:00,785 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 01:07:31] 2025-11-27 00:07:00,786 | INFO     | ***************************************
[2025-11-27 01:07:31] 2025-11-27 00:07:00,786 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 01:07:31] 2025-11-27 00:07:00,786 | INFO     | ***************************************
[2025-11-27 01:07:31] 2025-11-27 00:07:00,786 | INFO     | 
[2025-11-27 01:07:31] 2025-11-27 00:07:00,787 | INFO     | architecture information:
[2025-11-27 01:07:31] 2025-11-27 00:07:00,787 | INFO     | executing command: cat /etc/os-release
[2025-11-27 01:07:31] 2025-11-27 00:07:00,795 | INFO     | cat /etc/os-release:
[2025-11-27 01:07:31] NAME="CentOS Linux"
[2025-11-27 01:07:31] VERSION="7 (Core)"
[2025-11-27 01:07:31] ID="centos"
[2025-11-27 01:07:31] ID_LIKE="rhel fedora"
[2025-11-27 01:07:31] VERSION_ID="7"
[2025-11-27 01:07:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 01:07:31] ANSI_COLOR="0;31"
[2025-11-27 01:07:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 01:07:31] HOME_URL="https://www.centos.org/"
[2025-11-27 01:07:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 01:07:31] 
[2025-11-27 01:07:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 01:07:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 01:07:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 01:07:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 01:07:31] 
[2025-11-27 01:07:31] 2025-11-27 00:07:00,796 | INFO     | ***************************************
[2025-11-27 01:07:31] 2025-11-27 00:07:01,299 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 01:07:31] 2025-11-27 00:07:01,312 | INFO     | sufficient remaining disk space (225929330688 B)
[2025-11-27 01:07:31] 2025-11-27 00:07:01,312 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 01:07:31] 2025-11-27 00:07:01,312 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 01:07:31] 2025-11-27 00:07:01,312 | INFO     | update_server=False
[2025-11-27 01:07:31] 2025-11-27 00:07:01,312 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 01:07:31] 2025-11-27 00:07:01,312 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:07:31] 2025-11-27 00:07:01,312 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 01:07:31] 2025-11-27 00:07:01,458 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 01:07:31] 2025-11-27 00:07:01,458 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 01:07:31] 2025-11-27 00:07:01,458 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 01:07:31] 2025-11-27 00:07:01,458 | INFO     | will abort loop
[2025-11-27 01:07:31] 2025-11-27 00:07:01,470 | INFO     | all data control threads have been joined
[2025-11-27 01:07:31] 2025-11-27 00:07:01,657 | INFO     | all job control threads have been joined
[2025-11-27 01:07:31] 2025-11-27 00:07:01,891 | INFO     | all payload control threads have been joined
[2025-11-27 01:07:31] 2025-11-27 00:07:02,318 | INFO     | [job] retrieve thread has finished
[2025-11-27 01:07:31] 2025-11-27 00:07:02,318 | INFO     | [job] queue monitor thread has finished
[2025-11-27 01:07:31] 2025-11-27 00:07:02,370 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 01:07:31] 2025-11-27 00:07:02,464 | INFO     | [job] job monitor thread has finished
[2025-11-27 01:07:31] 2025-11-27 00:07:02,475 | INFO     | [data] control thread has finished
[2025-11-27 01:07:31] 2025-11-27 00:07:02,662 | INFO     | [job] control thread has finished
[2025-11-27 01:07:31] 2025-11-27 00:07:02,796 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 01:07:31] 2025-11-27 00:07:02,897 | INFO     | [payload] control thread has finished
[2025-11-27 01:07:31] 2025-11-27 00:07:03,119 | INFO     | [payload] failed_post thread has finished
[2025-11-27 01:07:31] 2025-11-27 00:07:03,201 | INFO     | [data] copytool_in thread has finished
[2025-11-27 01:07:31] 2025-11-27 00:07:03,318 | INFO     | [data] copytool_out thread has finished
[2025-11-27 01:07:31] 2025-11-27 00:07:03,690 | INFO     | [payload] validate_post thread has finished
[2025-11-27 01:07:31] 2025-11-27 00:07:03,780 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 01:07:31] 2025-11-27 00:07:03,785 | INFO     | [job] validate thread has finished
[2025-11-27 01:07:31] 2025-11-27 00:07:04,645 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 01:07:31] 2025-11-27 00:07:08,652 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 01:07:31] 2025-11-27 00:07:12,275 | INFO     | job.realtimelogging is not enabled
[2025-11-27 01:07:31] 2025-11-27 00:07:13,281 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 01:07:31] 2025-11-27 00:07:18,810 | INFO     | [monitor] cgroup control has ended
[2025-11-27 01:07:31] 2025-11-27 00:07:19,362 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140274669942592)>', '<ExcThread(monitor, started 140274397320960)>']
[2025-11-27 01:07:31] 2025-11-27 00:07:24,378 | INFO     | all workflow threads have been joined
[2025-11-27 01:07:31] 2025-11-27 00:07:24,379 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 01:07:31] 2025-11-27 00:07:24,379 | INFO     | traces error code: 0
[2025-11-27 01:07:31] 2025-11-27 00:07:24,379 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 01:07:31] 2025-11-27 00:07:30,986 | INFO     | PID=1584217 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 01:07:31] 2025-11-27 00:07:30,987 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 01:07:31] 2025-11-27 00:07:30,987 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 01:07:31] 2025-11-27 00:07:30,987 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 01:07:31] 2025-11-27 00:07:30,987 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 01:07:31] 2025-11-27 00:07:30,987 | INFO     | [monitor] control thread has ended
[2025-11-27 01:07:31] 2025-11-27 00:07:31,033 [wrapper] ==== pilot stdout END ====
[2025-11-27 01:07:31] 2025-11-27 00:07:31,036 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 01:07:31] 2025-11-27 00:07:31,038 [wrapper] pilotpid: 1584217
[2025-11-27 01:07:31] 2025-11-27 00:07:31,040 [wrapper] Pilot exit status: 0
[2025-11-27 01:07:31] 2025-11-27 00:07:31,047 [wrapper] pandaids: 6895351129
[2025-11-27 01:07:31] 2025-11-27 00:07:31,063 [wrapper] cleanup supervisor_pilot 1640736 1584218
[2025-11-27 01:07:31] 2025-11-27 00:07:31,065 [wrapper] Test setup, not cleaning
[2025-11-27 01:07:31] 2025-11-27 00:07:31,068 [wrapper] apfmon messages muted
[2025-11-27 01:07:31] 2025-11-27 00:07:31,070 [wrapper] ==== wrapper stdout END ====
[2025-11-27 01:07:31] 2025-11-27 00:07:31,072 [wrapper] ==== wrapper stderr END ====
[2025-11-27 01:07:31]  *** Error codes and diagnostics ***
[2025-11-27 01:07:31]     "exeErrorCode": 0,
[2025-11-27 01:07:31]     "exeErrorDiag": "",
[2025-11-27 01:07:31]     "pilotErrorCode": 0,
[2025-11-27 01:07:31]     "pilotErrorDiag": "",
[2025-11-27 01:07:31]  *** Listing of results directory ***
[2025-11-27 01:07:31] total 1310460
[2025-11-27 01:07:31] -rw-r--r-- 1 boinc boinc    576529 Nov 23 00:08 pilot3.tar.gz
[2025-11-27 01:07:31] -rw-r--r-- 1 boinc boinc      5112 Nov 23 00:08 queuedata.json
[2025-11-27 01:07:31] -rwx------ 1 boinc boinc     36292 Nov 23 00:09 runpilot2-wrapper.sh
[2025-11-27 01:07:31] -rw-r--r-- 1 boinc boinc       100 Nov 26 17:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 01:07:31] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 17:19 run_atlas
[2025-11-27 01:07:31] -rw-r--r-- 1 boinc boinc       105 Nov 26 17:19 job.xml
[2025-11-27 01:07:31] -rw-r--r-- 2 boinc boinc 410526985 Nov 26 17:19 EVNT.47483658._000538.pool.root.1
[2025-11-27 01:07:31] drwxrwx--x 2 boinc boinc      4096 Nov 26 17:19 shared
[2025-11-27 01:07:31] -rw-r--r-- 2 boinc boinc    590098 Nov 26 17:19 input.tar.gz
[2025-11-27 01:07:31] -rw-r--r-- 2 boinc boinc     15847 Nov 26 17:19 start_atlas.sh
[2025-11-27 01:07:31] -rw-r--r-- 1 boinc boinc         0 Nov 26 17:19 boinc_setup_complete
[2025-11-27 01:07:31] -rw-r--r-- 1 boinc boinc      6442 Nov 26 17:19 init_data.xml
[2025-11-27 01:07:31] -rw-r--r-- 1 boinc boinc         0 Nov 26 17:19 boinc_lockfile
[2025-11-27 01:07:31] -rw-r--r-- 1 boinc boinc      2784 Nov 26 17:19 pandaJob.out
[2025-11-27 01:07:31] -rw------- 1 boinc boinc    991855 Nov 26 17:19 agis_schedconf.cvmfs.json
[2025-11-27 01:07:31] drwx------ 5 boinc boinc      4096 Nov 26 17:19 pilot3
[2025-11-27 01:07:31] -rw-r--r-- 1 boinc boinc       532 Nov 27 01:02 boinc_task_state.xml
[2025-11-27 01:07:31] -rw------- 1 boinc boinc 917258067 Nov 27 01:06 HITS.47556137._005340.pool.root.1
[2025-11-27 01:07:31] -rw------- 1 boinc boinc      1024 Nov 27 01:06 memory_monitor_summary.json
[2025-11-27 01:07:31] -rw------- 1 boinc boinc   1516240 Nov 27 01:06 agis_ddmendpoints.agis.ALL.json
[2025-11-27 01:07:31] -rw------- 1 boinc boinc   1158546 Nov 27 01:06 log.47556137._005340.job.log.tgz.1
[2025-11-27 01:07:31] -rw------- 1 boinc boinc      8567 Nov 27 01:06 heartbeat.json
[2025-11-27 01:07:31] -rw-r--r-- 1 boinc boinc      8192 Nov 27 01:07 boinc_mmap_file
[2025-11-27 01:07:31] -rw-r--r-- 1 boinc boinc        28 Nov 27 01:07 wrapper_checkpoint.txt
[2025-11-27 01:07:31] -rw------- 1 boinc boinc       747 Nov 27 01:07 pilotlog.txt
[2025-11-27 01:07:31] -rw------- 1 boinc boinc        95 Nov 27 01:07 pilot_heartbeat.json
[2025-11-27 01:07:31] -rw------- 1 boinc boinc   3956377 Nov 27 01:07 log.47556137._005340.job.log.1
[2025-11-27 01:07:31] -rw------- 1 boinc boinc       353 Nov 27 01:07 output.list
[2025-11-27 01:07:31] -rw-r--r-- 1 boinc boinc       620 Nov 27 01:07 runtime_log
[2025-11-27 01:07:31] -rw------- 1 boinc boinc   5130240 Nov 27 01:07 result.tar.gz
[2025-11-27 01:07:31] -rw------- 1 boinc boinc       666 Nov 27 01:07 tboLDm8tBh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3RKKDmLtO31n.diag
[2025-11-27 01:07:31] -rw-r--r-- 1 boinc boinc      8903 Nov 27 01:07 runtime_log.err
[2025-11-27 01:07:31] -rw-r--r-- 1 boinc boinc     11657 Nov 27 01:07 stderr.txt
[2025-11-27 01:07:31] HITS file was successfully produced:
[2025-11-27 01:07:31] -rw------- 1 boinc boinc 917258067 Nov 27 01:06 shared/HITS.pool.root.1
[2025-11-27 01:07:31]  *** Contents of shared directory: ***
[2025-11-27 01:07:31] total 1302284
[2025-11-27 01:07:31] -rw-r--r-- 2 boinc boinc 410526985 Nov 26 17:19 ATLAS.root_0
[2025-11-27 01:07:31] -rw-r--r-- 2 boinc boinc    590098 Nov 26 17:19 input.tar.gz
[2025-11-27 01:07:31] -rw-r--r-- 2 boinc boinc     15847 Nov 26 17:19 start_atlas.sh
[2025-11-27 01:07:31] -rw------- 1 boinc boinc 917258067 Nov 27 01:06 HITS.pool.root.1
[2025-11-27 01:07:31] -rw------- 1 boinc boinc   5130240 Nov 27 01:07 result.tar.gz
01:07:32 (1580496): run_atlas exited; CPU time 81815.721997
01:07:32 (1580496): called boinc_finish(0)

</stderr_txt>
]]>

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