Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:54:50 (7764): wrapper (7.7.26015): starting
00:54:50 (7764): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 00:54:50] Arguments: --nthreads 12
[2025-11-24 00:54:50] Threads: 12
[2025-11-24 00:54:50] Checking for CVMFS
[2025-11-24 00:54:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:54:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:54:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:54:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:54:51] 2.11.2.0 2987 284362 93824 153235 2 82 13710501 20275201 1 130560 1 127695673 99.967 16937535 14015 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:54:51] CVMFS is ok
[2025-11-24 00:54:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:54:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:54:51] Further information can be found at the LHC@home message board.
[2025-11-24 00:54:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:54:51] Checking for apptainer binary...
[2025-11-24 00:54:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:54:51] Running /usr/bin/apptainer --version
[2025-11-24 00:54:51] apptainer version 1.3.2-1.el7
[2025-11-24 00:54:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:54:52] c-205-19.aglt2.org
[2025-11-24 00:54:52] apptainer works
[2025-11-24 00:54:52] Set ATHENA_PROC_NUMBER=12
[2025-11-24 00:54:52] Set ATHENA_CORE_NUMBER=12
[2025-11-24 00:54:52] Starting ATLAS job with PandaID=6895331065
[2025-11-24 00:54:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 08:09:20]  *** The last 200 lines of the pilot log: ***
[2025-11-24 08:09:20] 2025-11-24 13:08:46,975 | INFO     | time since job start (26019s) is within the limit (172800.0s)
[2025-11-24 08:09:20] 2025-11-24 13:08:47,136 | INFO     | monitor loop #1946: job 0:6895331065 is in state 'finished'
[2025-11-24 08:09:20] 2025-11-24 13:08:47,137 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 08:09:20] 2025-11-24 13:08:47,853 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 08:09:20] 2025-11-24 13:08:47,857 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-11-24 08:09:20] 2025-11-24 13:08:47,859 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895331065/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 08:09:20] 2025-11-24 13:08:47,860 | INFO     | extracted standard info from prmon json
[2025-11-24 08:09:20] 2025-11-24 13:08:47,860 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 08:09:20] 2025-11-24 13:08:47,860 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 08:09:20] 2025-11-24 13:08:47,868 | INFO     | fitting pss+swap vs Time
[2025-11-24 08:09:20] 2025-11-24 13:08:47,868 | INFO     | sum of square deviations: 23971668784.61977
[2025-11-24 08:09:20] 2025-11-24 13:08:47,872 | INFO     | sum of deviations: 401347076155.53546
[2025-11-24 08:09:20] 2025-11-24 13:08:47,872 | INFO     | mean x: 1763976699.7464788
[2025-11-24 08:09:20] 2025-11-24 13:08:47,873 | INFO     | mean y: 3431988.0234741783
[2025-11-24 08:09:20] 2025-11-24 13:08:47,873 | INFO     | intersect: -29530051776.109455
[2025-11-24 08:09:20] 2025-11-24 13:08:47,873 | INFO     | chi2: 5.02968168103331
[2025-11-24 08:09:20] 2025-11-24 13:08:47,874 | INFO     | sum of square deviations: 23137480516.8123
[2025-11-24 08:09:20] 2025-11-24 13:08:47,878 | INFO     | sum of deviations: 550294002898.3701
[2025-11-24 08:09:20] 2025-11-24 13:08:47,878 | INFO     | mean x: 1763976547.249406
[2025-11-24 08:09:20] 2025-11-24 13:08:47,878 | INFO     | mean y: 3459184.482185273
[2025-11-24 08:09:20] 2025-11-24 13:08:47,878 | INFO     | intersect: -41950361781.43419
[2025-11-24 08:09:20] 2025-11-24 13:08:47,879 | INFO     | chi2: 2.4495752619855073
[2025-11-24 08:09:20] 2025-11-24 13:08:47,879 | INFO     | current chi2=2.4495752619855073 (change=51.297608530123505 %)
[2025-11-24 08:09:20] 2025-11-24 13:08:47,879 | INFO     | sum of square deviations: 22322874011.497505
[2025-11-24 08:09:20] 2025-11-24 13:08:47,883 | INFO     | sum of deviations: 569781404458.8196
[2025-11-24 08:09:20] 2025-11-24 13:08:47,883 | INFO     | mean x: 1763976394.7524037
[2025-11-24 08:09:20] 2025-11-24 13:08:47,883 | INFO     | mean y: 3462796.9302884615
[2025-11-24 08:09:20] 2025-11-24 13:08:47,883 | INFO     | intersect: -45021248049.73569
[2025-11-24 08:09:20] 2025-11-24 13:08:47,884 | INFO     | chi2: 2.248397242706272
[2025-11-24 08:09:20] 2025-11-24 13:08:47,884 | INFO     | current chi2=2.248397242706272 (change=8.212771511913864 %)
[2025-11-24 08:09:20] 2025-11-24 13:08:47,884 | INFO     | right removable region: 415
[2025-11-24 08:09:20] 2025-11-24 13:08:47,884 | INFO     | sum of square deviations: 23137416466.812286
[2025-11-24 08:09:20] 2025-11-24 13:08:47,888 | INFO     | sum of deviations: 271805543263.60532
[2025-11-24 08:09:20] 2025-11-24 13:08:47,888 | INFO     | mean x: 1763976852.249406
[2025-11-24 08:09:20] 2025-11-24 13:08:47,889 | INFO     | mean y: 3455584.42280285
[2025-11-24 08:09:20] 2025-11-24 13:08:47,889 | INFO     | intersect: -20718766679.147438
[2025-11-24 08:09:20] 2025-11-24 13:08:47,889 | INFO     | chi2: 2.9270363079365027
[2025-11-24 08:09:20] 2025-11-24 13:08:47,889 | INFO     | current chi2=2.9270363079365027 (change=41.804740467488884 %)
[2025-11-24 08:09:20] 2025-11-24 13:08:47,890 | INFO     | sum of square deviations: 22322822830.99035
[2025-11-24 08:09:20] 2025-11-24 13:08:47,893 | INFO     | sum of deviations: 237492042296.32672
[2025-11-24 08:09:20] 2025-11-24 13:08:47,894 | INFO     | mean x: 1763977004.7451923
[2025-11-24 08:09:20] 2025-11-24 13:08:47,894 | INFO     | mean y: 3462001.1634615385
[2025-11-24 08:09:20] 2025-11-24 13:08:47,894 | INFO     | intersect: -18763452227.9411
[2025-11-24 08:09:20] 2025-11-24 13:08:47,894 | INFO     | chi2: 2.868010381381084
[2025-11-24 08:09:20] 2025-11-24 13:08:47,894 | INFO     | current chi2=2.868010381381084 (change=2.016576507622166 %)
[2025-11-24 08:09:20] 2025-11-24 13:08:47,895 | INFO     | left removable region: 20
[2025-11-24 08:09:20] 2025-11-24 13:08:47,895 | INFO     | sum of square deviations: 19110054453.179672
[2025-11-24 08:09:20] 2025-11-24 13:08:47,898 | INFO     | sum of deviations: 365825358173.27057
[2025-11-24 08:09:20] 2025-11-24 13:08:47,898 | INFO     | mean x: 1763976974.2455697
[2025-11-24 08:09:20] 2025-11-24 13:08:47,899 | INFO     | mean y: 3501545.4405063293
[2025-11-24 08:09:20] 2025-11-24 13:08:47,899 | INFO     | intersect: -33764456049.542515
[2025-11-24 08:09:20] 2025-11-24 13:08:47,899 | INFO     | chi2: 0.052962242902534894
[2025-11-24 08:09:20] 2025-11-24 13:08:47,899 | INFO     | current memory leak: 19.14 B/s (using 395 data points, chi2=0.05)
[2025-11-24 08:09:20] 2025-11-24 13:08:47,900 | INFO     | could have reported an average CPU frequency of 2407 MHz (18 samples)
[2025-11-24 08:09:20] 2025-11-24 13:08:47,900 | INFO     | ..............................
[2025-11-24 08:09:20] 2025-11-24 13:08:47,900 | INFO     | . Timing measurements:
[2025-11-24 08:09:20] 2025-11-24 13:08:47,900 | INFO     | . get job = 0 s
[2025-11-24 08:09:20] 2025-11-24 13:08:47,901 | INFO     | . initial setup = 2 s
[2025-11-24 08:09:20] 2025-11-24 13:08:47,901 | INFO     | . payload setup = 7 s
[2025-11-24 08:09:20] 2025-11-24 13:08:47,901 | INFO     | . stage-in = 0 s
[2025-11-24 08:09:20] 2025-11-24 13:08:47,901 | INFO     | . payload execution = 25980 s
[2025-11-24 08:09:20] 2025-11-24 13:08:47,901 | INFO     | . stage-out = 3 s
[2025-11-24 08:09:20] 2025-11-24 13:08:47,901 | INFO     | . log creation = 0 s
[2025-11-24 08:09:20] 2025-11-24 13:08:47,901 | INFO     | ..............................
[2025-11-24 08:09:20] 2025-11-24 13:08:47,984 | INFO     | 
[2025-11-24 08:09:20] 2025-11-24 13:08:47,984 | INFO     | job summary report
[2025-11-24 08:09:20] 2025-11-24 13:08:47,984 | INFO     | --------------------------------------------------
[2025-11-24 08:09:20] 2025-11-24 13:08:47,984 | INFO     | PanDA job id: 6895331065
[2025-11-24 08:09:20] 2025-11-24 13:08:47,984 | INFO     | task id: 47556137
[2025-11-24 08:09:20] 2025-11-24 13:08:47,984 | INFO     | errors: (none)
[2025-11-24 08:09:20] 2025-11-24 13:08:47,985 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 08:09:20] 2025-11-24 13:08:47,985 | INFO     | pilot state: finished 
[2025-11-24 08:09:20] 2025-11-24 13:08:47,985 | INFO     | transexitcode: 0
[2025-11-24 08:09:20] 2025-11-24 13:08:47,985 | INFO     | exeerrorcode: 0
[2025-11-24 08:09:20] 2025-11-24 13:08:47,985 | INFO     | exeerrordiag: 
[2025-11-24 08:09:20] 2025-11-24 13:08:47,985 | INFO     | exitcode: 0
[2025-11-24 08:09:20] 2025-11-24 13:08:47,985 | INFO     | exitmsg: OK
[2025-11-24 08:09:20] 2025-11-24 13:08:47,985 | INFO     | cpuconsumptiontime: 299063 s
[2025-11-24 08:09:20] 2025-11-24 13:08:47,985 | INFO     | nevents: 1000
[2025-11-24 08:09:20] 2025-11-24 13:08:47,986 | INFO     | neventsw: 0
[2025-11-24 08:09:20] 2025-11-24 13:08:47,986 | INFO     | pid: 17942
[2025-11-24 08:09:20] 2025-11-24 13:08:47,986 | INFO     | pgrp: 17942
[2025-11-24 08:09:20] 2025-11-24 13:08:47,986 | INFO     | corecount: 12
[2025-11-24 08:09:20] 2025-11-24 13:08:47,986 | INFO     | event service: False
[2025-11-24 08:09:20] 2025-11-24 13:08:47,986 | INFO     | sizes: {0: 2298635, 1: 2298834, 6: 2299096, 11: 2299124, 25991: 2336445, 25996: 2346230, 25999: 2346414, 26004: 2346660}
[2025-11-24 08:09:20] 2025-11-24 13:08:47,986 | INFO     | --------------------------------------------------
[2025-11-24 08:09:20] 2025-11-24 13:08:47,986 | INFO     | 
[2025-11-24 08:09:20] 2025-11-24 13:08:47,987 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 08:09:20] 2025-11-24 13:08:48,008 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 08:09:20] 2025-11-24 13:08:48,009 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 08:09:20] 2025-11-24 13:08:48,009 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 08:09:20] 2025-11-24 13:08:48,009 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 08:09:20] 2025-11-24 13:08:48,009 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 08:09:20] 2025-11-24 13:08:48,010 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 08:09:20] 2025-11-24 13:08:48,010 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 08:09:20] 2025-11-24 13:08:48,010 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 08:09:20] 2025-11-24 13:08:48,010 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 08:09:20] 2025-11-24 13:08:48,010 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 08:09:20] 2025-11-24 13:08:48,010 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 08:09:20] 2025-11-24 13:08:48,011 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 08:09:20] 2025-11-24 13:08:48,011 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 08:09:20] 2025-11-24 13:08:48,011 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 08:09:20] 2025-11-24 13:08:48,011 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 08:09:20] 2025-11-24 13:08:48,011 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 08:09:20] 2025-11-24 13:08:48,011 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 08:09:20] 2025-11-24 13:08:48,012 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 08:09:20] 2025-11-24 13:08:48,012 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 08:09:20] 2025-11-24 13:08:48,012 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 08:09:20] 2025-11-24 13:08:48,012 | INFO     | job 6895331065 has completed (purged errors)
[2025-11-24 08:09:20] 2025-11-24 13:08:48,012 | INFO     | overall cleanup function is called
[2025-11-24 08:09:20] 2025-11-24 13:08:49,029 | INFO     | --- collectZombieJob: --- 10, [17942]
[2025-11-24 08:09:20] 2025-11-24 13:08:49,029 | INFO     | zombie collector waiting for pid 17942
[2025-11-24 08:09:20] 2025-11-24 13:08:49,029 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 08:09:20] 2025-11-24 13:08:49,029 | INFO     | collected zombie processes
[2025-11-24 08:09:20] 2025-11-24 13:08:49,029 | INFO     | will attempt to kill all subprocesses of pid=17942
[2025-11-24 08:09:20] 2025-11-24 13:08:49,122 | INFO     | process IDs to be killed: [17942] (in reverse order)
[2025-11-24 08:09:20] 2025-11-24 13:08:49,177 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 08:09:20] 2025-11-24 13:08:49,177 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 08:09:20] 2025-11-24 13:08:49,181 | INFO     | did not find any defunct processes belonging to 17942
[2025-11-24 08:09:20] 2025-11-24 13:08:49,184 | INFO     | did not find any defunct processes belonging to 17942
[2025-11-24 08:09:20] 2025-11-24 13:08:49,187 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 08:09:20] 2025-11-24 13:08:49,187 | INFO     | ready for new job
[2025-11-24 08:09:20] 2025-11-24 13:08:49,187 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 08:09:20] 2025-11-24 13:08:49,189 | INFO     | ***************************************
[2025-11-24 08:09:20] 2025-11-24 13:08:49,189 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 08:09:20] 2025-11-24 13:08:49,189 | INFO     | ***************************************
[2025-11-24 08:09:20] 2025-11-24 13:08:49,189 | INFO     | 
[2025-11-24 08:09:20] 2025-11-24 13:08:49,190 | INFO     | architecture information:
[2025-11-24 08:09:20] 2025-11-24 13:08:49,191 | INFO     | executing command: cat /etc/os-release
[2025-11-24 08:09:20] 2025-11-24 13:08:49,207 | INFO     | cat /etc/os-release:
[2025-11-24 08:09:20] NAME="CentOS Linux"
[2025-11-24 08:09:20] VERSION="7 (Core)"
[2025-11-24 08:09:20] ID="centos"
[2025-11-24 08:09:20] ID_LIKE="rhel fedora"
[2025-11-24 08:09:20] VERSION_ID="7"
[2025-11-24 08:09:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 08:09:20] ANSI_COLOR="0;31"
[2025-11-24 08:09:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 08:09:20] HOME_URL="https://www.centos.org/"
[2025-11-24 08:09:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 08:09:20] 
[2025-11-24 08:09:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 08:09:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 08:09:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 08:09:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 08:09:20] 
[2025-11-24 08:09:20] 2025-11-24 13:08:49,207 | INFO     | ***************************************
[2025-11-24 08:09:20] 2025-11-24 13:08:49,710 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 08:09:20] 2025-11-24 13:08:49,728 | INFO     | sufficient remaining disk space (28244443136 B)
[2025-11-24 08:09:20] 2025-11-24 13:08:49,728 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 08:09:20] 2025-11-24 13:08:49,728 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 08:09:20] 2025-11-24 13:08:49,729 | INFO     | update_server=False
[2025-11-24 08:09:20] 2025-11-24 13:08:49,729 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 08:09:20] 2025-11-24 13:08:49,729 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 08:09:20] 2025-11-24 13:08:49,754 | INFO     | all job control threads have been joined
[2025-11-24 08:09:20] 2025-11-24 13:08:49,912 | INFO     | [monitor] cgroup control has ended
[2025-11-24 08:09:20] 2025-11-24 13:08:49,961 | INFO     | all data control threads have been joined
[2025-11-24 08:09:20] 2025-11-24 13:08:50,363 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 08:09:20] 2025-11-24 13:08:50,655 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 08:09:20] 2025-11-24 13:08:50,655 | INFO     | aborting loop
[2025-11-24 08:09:20] 2025-11-24 13:08:50,734 | INFO     | [job] retrieve thread has finished
[2025-11-24 08:09:20] 2025-11-24 13:08:50,735 | INFO     | [job] queue monitor thread has finished
[2025-11-24 08:09:20] 2025-11-24 13:08:50,759 | INFO     | [job] control thread has finished
[2025-11-24 08:09:20] 2025-11-24 13:08:50,966 | INFO     | [data] control thread has finished
[2025-11-24 08:09:20] 2025-11-24 13:08:51,177 | INFO     | all payload control threads have been joined
[2025-11-24 08:09:20] 2025-11-24 13:08:51,220 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 08:09:20] 2025-11-24 13:08:51,406 | INFO     | [data] copytool_in thread has finished
[2025-11-24 08:09:20] 2025-11-24 13:08:51,425 | INFO     | [job] validate thread has finished
[2025-11-24 08:09:20] 2025-11-24 13:08:51,449 | INFO     | [payload] failed_post thread has finished
[2025-11-24 08:09:20] 2025-11-24 13:08:51,658 | INFO     | [job] job monitor thread has finished
[2025-11-24 08:09:20] 2025-11-24 13:08:51,860 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 08:09:20] 2025-11-24 13:08:52,129 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 08:09:20] 2025-11-24 13:08:52,182 | INFO     | [payload] control thread has finished
[2025-11-24 08:09:20] 2025-11-24 13:08:52,293 | INFO     | [payload] validate_post thread has finished
[2025-11-24 08:09:20] 2025-11-24 13:08:52,369 | INFO     | [data] copytool_out thread has finished
[2025-11-24 08:09:20] 2025-11-24 13:08:52,932 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 08:09:20] 2025-11-24 13:08:56,934 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 08:09:20] 2025-11-24 13:08:59,980 | INFO     | job.realtimelogging is not enabled
[2025-11-24 08:09:20] 2025-11-24 13:09:00,985 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 08:09:20] 2025-11-24 13:09:01,995 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139706305148736)>', '<ExcThread(monitor, started 139705253345024)>']
[2025-11-24 08:09:20] 2025-11-24 13:09:07,019 | INFO     | all workflow threads have been joined
[2025-11-24 08:09:20] 2025-11-24 13:09:07,019 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 08:09:20] 2025-11-24 13:09:07,020 | INFO     | traces error code: 0
[2025-11-24 08:09:20] 2025-11-24 13:09:07,020 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 08:09:20] 2025-11-24 13:09:20,184 | INFO     | PID=11576 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 08:09:20] 2025-11-24 13:09:20,184 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 08:09:20] 2025-11-24 13:09:20,184 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 08:09:20] 2025-11-24 13:09:20,184 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 08:09:20] 2025-11-24 13:09:20,184 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 08:09:20] 2025-11-24 13:09:20,184 | INFO     | [monitor] control thread has ended
[2025-11-24 08:09:20] 2025-11-24 13:09:20,289 [wrapper] ==== pilot stdout END ====
[2025-11-24 08:09:20] 2025-11-24 13:09:20,292 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 08:09:20] 2025-11-24 13:09:20,295 [wrapper] pilotpid: 11576
[2025-11-24 08:09:20] 2025-11-24 13:09:20,299 [wrapper] Pilot exit status: 0
[2025-11-24 08:09:20] 2025-11-24 13:09:20,311 [wrapper] pandaids: 6895331065
[2025-11-24 08:09:20] 2025-11-24 13:09:20,345 [wrapper] cleanup supervisor_pilot 32540 11577
[2025-11-24 08:09:20] 2025-11-24 13:09:20,349 [wrapper] Test setup, not cleaning
[2025-11-24 08:09:20] 2025-11-24 13:09:20,353 [wrapper] apfmon messages muted
[2025-11-24 08:09:20] 2025-11-24 13:09:20,357 [wrapper] ==== wrapper stdout END ====
[2025-11-24 08:09:20] 2025-11-24 13:09:20,361 [wrapper] ==== wrapper stderr END ====
[2025-11-24 08:09:20]  *** Error codes and diagnostics ***
[2025-11-24 08:09:20]     "exeErrorCode": 0,
[2025-11-24 08:09:20]     "exeErrorDiag": "",
[2025-11-24 08:09:20]     "pilotErrorCode": 0,
[2025-11-24 08:09:20]     "pilotErrorDiag": "",
[2025-11-24 08:09:20]  *** Listing of results directory ***
[2025-11-24 08:09:20] total 1318512
[2025-11-24 08:09:20] -rw-r--r-- 1 boincer umatlas    576529 Nov 21 17:05 pilot3.tar.gz
[2025-11-24 08:09:20] -rwx------ 1 boincer umatlas     36292 Nov 21 17:25 runpilot2-wrapper.sh
[2025-11-24 08:09:20] -rw-r--r-- 1 boincer umatlas      5112 Nov 21 17:25 queuedata.json
[2025-11-24 08:09:20] -rw-r--r-- 1 boincer umatlas       100 Nov 24 00:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 08:09:20] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 00:54 run_atlas
[2025-11-24 08:09:20] -rw-r--r-- 1 boincer umatlas       105 Nov 24 00:54 job.xml
[2025-11-24 08:09:20] -rw-r--r-- 2 boincer umatlas 407270552 Nov 24 00:54 EVNT.47483658._000157.pool.root.1
[2025-11-24 08:09:20] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 00:54 start_atlas.sh
[2025-11-24 08:09:20] drwxrwx--x 2 boincer umatlas      4096 Nov 24 00:54 shared
[2025-11-24 08:09:20] -rw-r--r-- 2 boincer umatlas    590097 Nov 24 00:54 input.tar.gz
[2025-11-24 08:09:20] -rw-r--r-- 1 boincer umatlas         0 Nov 24 00:54 boinc_lockfile
[2025-11-24 08:09:20] -rw-r--r-- 1 boincer umatlas      2785 Nov 24 00:54 pandaJob.out
[2025-11-24 08:09:20] -rw------- 1 boincer umatlas        57 Nov 24 00:54 setup.sh.local
[2025-11-24 08:09:20] -rw------- 1 boincer umatlas    989786 Nov 24 00:55 agis_schedconf.cvmfs.json
[2025-11-24 08:09:20] drwx------ 5 boincer umatlas      4096 Nov 24 00:55 pilot3
[2025-11-24 08:09:20] -rw-r--r-- 1 boincer umatlas       532 Nov 24 07:59 boinc_task_state.xml
[2025-11-24 08:09:20] -rw-r--r-- 1 boincer umatlas      5955 Nov 24 08:00 init_data.xml
[2025-11-24 08:09:20] -rw------- 1 boincer umatlas 927333220 Nov 24 08:08 HITS.47556137._001569.pool.root.1
[2025-11-24 08:09:20] -rw------- 1 boincer umatlas        95 Nov 24 08:08 pilot_heartbeat.json
[2025-11-24 08:09:20] -rw------- 1 boincer umatlas      1063 Nov 24 08:08 memory_monitor_summary.json
[2025-11-24 08:09:20] -rw------- 1 boincer umatlas   1516227 Nov 24 08:08 agis_ddmendpoints.agis.ALL.json
[2025-11-24 08:09:20] -rw------- 1 boincer umatlas   2184345 Nov 24 08:08 log.47556137._001569.job.log.tgz.1
[2025-11-24 08:09:20] -rw------- 1 boincer umatlas      8666 Nov 24 08:08 heartbeat.json
[2025-11-24 08:09:20] -rw-r--r-- 1 boincer umatlas        29 Nov 24 08:09 wrapper_checkpoint.txt
[2025-11-24 08:09:20] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 08:09 boinc_mmap_file
[2025-11-24 08:09:20] -rw------- 1 boincer umatlas       745 Nov 24 08:09 pilotlog.txt
[2025-11-24 08:09:20] -rw------- 1 boincer umatlas   3637635 Nov 24 08:09 log.47556137._001569.job.log.1
[2025-11-24 08:09:20] -rw------- 1 boincer umatlas       353 Nov 24 08:09 output.list
[2025-11-24 08:09:20] -rw-r--r-- 1 boincer umatlas       620 Nov 24 08:09 runtime_log
[2025-11-24 08:09:20] -rw------- 1 boincer umatlas   5836800 Nov 24 08:09 result.tar.gz
[2025-11-24 08:09:20] -rw-r--r-- 1 boincer umatlas      9345 Nov 24 08:09 runtime_log.err
[2025-11-24 08:09:20] -rw------- 1 boincer umatlas       670 Nov 24 08:09 5dtLDmPkog8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjkJKDmAg3KMn.diag
[2025-11-24 08:09:20] -rw-r--r-- 1 boincer umatlas     21295 Nov 24 08:09 stderr.txt
[2025-11-24 08:09:20] HITS file was successfully produced:
[2025-11-24 08:09:20] -rw------- 1 boincer umatlas 927333220 Nov 24 08:08 shared/HITS.pool.root.1
[2025-11-24 08:09:20]  *** Contents of shared directory: ***
[2025-11-24 08:09:20] total 1309628
[2025-11-24 08:09:20] -rw-r--r-- 2 boincer umatlas 407270552 Nov 24 00:54 ATLAS.root_0
[2025-11-24 08:09:20] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 00:54 start_atlas.sh
[2025-11-24 08:09:20] -rw-r--r-- 2 boincer umatlas    590097 Nov 24 00:54 input.tar.gz
[2025-11-24 08:09:20] -rw------- 1 boincer umatlas 927333220 Nov 24 08:08 HITS.pool.root.1
[2025-11-24 08:09:20] -rw------- 1 boincer umatlas   5836800 Nov 24 08:09 result.tar.gz
08:09:21 (7764): run_atlas exited; CPU time 292280.919247
08:09:21 (7764): called boinc_finish(0)

</stderr_txt>
]]>

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