Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:52:28 (1486453): wrapper (7.7.26015): starting
17:52:28 (1486453): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 17:52:28] Arguments: --nthreads 3
[2025-11-26 17:52:28] Threads: 3
[2025-11-26 17:52:28] Checking for CVMFS
[2025-11-26 17:52:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 17:52:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 17:52:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 17:52:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 17:52:29] 2.9.2.0 4159227 11332 94820 153328 0 81 36501814 36864001 0 130560 1 4201926 99.933 572863 733 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 17:52:29] CVMFS is ok
[2025-11-26 17:52:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 17:52:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 17:52:29] Further information can be found at the LHC@home message board.
[2025-11-26 17:52:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 17:52:29] Checking for apptainer binary...
[2025-11-26 17:52:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 17:52:29] Running /usr/bin/apptainer --version
[2025-11-26 17:52:29] apptainer version 1.4.1-1.1
[2025-11-26 17:52:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 17:52:29] thA349
[2025-11-26 17:52:29] apptainer works
[2025-11-26 17:52:29] Set ATHENA_PROC_NUMBER=3
[2025-11-26 17:52:29] Set ATHENA_CORE_NUMBER=3
[2025-11-26 17:52:29] Starting ATLAS job with PandaID=6895357000
[2025-11-26 17:52:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:00:17]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:00:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:00:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:00:17] 
[2025-11-27 02:00:17] 2025-11-27 00:59:31,767 | INFO     | ***************************************
[2025-11-27 02:00:17] 2025-11-27 00:59:32,270 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 02:00:17] 2025-11-27 00:59:32,283 | INFO     | sufficient remaining disk space (264557821952 B)
[2025-11-27 02:00:17] 2025-11-27 00:59:32,284 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:00:17] 2025-11-27 00:59:32,284 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:00:17] 2025-11-27 00:59:32,284 | INFO     | update_server=False
[2025-11-27 02:00:17] 2025-11-27 00:59:32,284 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:00:17] 2025-11-27 00:59:32,284 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:00:17] 2025-11-27 00:59:32,284 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:00:17] 2025-11-27 00:59:32,825 | INFO     | all data control threads have been joined
[2025-11-27 02:00:17] 2025-11-27 00:59:33,048 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:00:17] 2025-11-27 00:59:33,049 | INFO     | aborting loop
[2025-11-27 02:00:17] 2025-11-27 00:59:33,060 | INFO     | all job control threads have been joined
[2025-11-27 02:00:17] 2025-11-27 00:59:33,192 | INFO     | all payload control threads have been joined
[2025-11-27 02:00:17] 2025-11-27 00:59:33,289 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:00:17] 2025-11-27 00:59:33,290 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:00:17] 2025-11-27 00:59:33,517 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:00:17] 2025-11-27 00:59:33,831 | INFO     | [data] control thread has finished
[2025-11-27 02:00:17] 2025-11-27 00:59:33,997 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:00:17] 2025-11-27 00:59:34,054 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:00:17] 2025-11-27 00:59:34,066 | INFO     | [job] control thread has finished
[2025-11-27 02:00:17] 2025-11-27 00:59:34,198 | INFO     | [payload] control thread has finished
[2025-11-27 02:00:17] 2025-11-27 00:59:34,225 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:00:17] 2025-11-27 00:59:34,290 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:00:17] 2025-11-27 00:59:34,572 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:00:17] 2025-11-27 00:59:34,595 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:00:17] 2025-11-27 00:59:34,598 | INFO     | [job] validate thread has finished
[2025-11-27 02:00:17] 2025-11-27 00:59:34,602 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:00:17] 2025-11-27 00:59:34,662 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:00:17] 2025-11-27 00:59:38,005 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:00:17] 2025-11-27 00:59:42,432 | INFO     | job.realtimelogging is not enabled
[2025-11-27 02:00:17] 2025-11-27 00:59:43,438 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:00:17] 2025-11-27 01:00:02,017 | INFO     | PID=1490171 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 02:00:17] 2025-11-27 01:00:02,018 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:00:17] 2025-11-27 01:00:02,018 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:00:17] 2025-11-27 01:00:02,018 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:00:17] 2025-11-27 01:00:11,653 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:00:17] 2025-11-27 01:00:12,220 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140561989195584)>', '<ExcThread(monitor, started 140560966862592)>']
[2025-11-27 02:00:17] 2025-11-27 01:00:13,076 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:00:17] 2025-11-27 01:00:13,076 | INFO     | [monitor] control thread has ended
[2025-11-27 02:00:17] 2025-11-27 01:00:17,246 | INFO     | all workflow threads have been joined
[2025-11-27 02:00:17] 2025-11-27 01:00:17,246 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:00:17] 2025-11-27 01:00:17,246 | INFO     | traces error code: 0
[2025-11-27 02:00:17] 2025-11-27 01:00:17,247 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:00:17] 2025-11-27 01:00:17,297 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:00:17] 2025-11-27 01:00:17,300 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:00:17] 2025-11-27 01:00:17,303 [wrapper] pilotpid: 1490171
[2025-11-27 02:00:17] 2025-11-27 01:00:17,305 [wrapper] Pilot exit status: 0
[2025-11-27 02:00:17] 2025-11-27 01:00:17,313 [wrapper] pandaids: 6895357000
[2025-11-27 02:00:17] 2025-11-27 01:00:17,330 [wrapper] cleanup supervisor_pilot 1546639 1490172
[2025-11-27 02:00:17] 2025-11-27 01:00:17,332 [wrapper] Test setup, not cleaning
[2025-11-27 02:00:17] 2025-11-27 01:00:17,335 [wrapper] apfmon messages muted
[2025-11-27 02:00:17] 2025-11-27 01:00:17,338 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:00:17] 2025-11-27 01:00:17,340 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:00:17]  *** Error codes and diagnostics ***
[2025-11-27 02:00:17]     "exeErrorCode": 0,
[2025-11-27 02:00:17]     "exeErrorDiag": "",
[2025-11-27 02:00:17]     "pilotErrorCode": 0,
[2025-11-27 02:00:17]     "pilotErrorDiag": "",
[2025-11-27 02:00:17]  *** Listing of results directory ***
[2025-11-27 02:00:17] total 1309160
[2025-11-27 02:00:17] -rw-r--r-- 1 boinc boinc    576529 Nov 23 12:44 pilot3.tar.gz
[2025-11-27 02:00:17] -rwx------ 1 boinc boinc     36292 Nov 23 12:48 runpilot2-wrapper.sh
[2025-11-27 02:00:17] -rw-r--r-- 1 boinc boinc      5112 Nov 23 12:48 queuedata.json
[2025-11-27 02:00:17] -rw-r--r-- 1 boinc boinc       100 Nov 26 17:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:00:17] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 17:52 run_atlas
[2025-11-27 02:00:17] -rw-r--r-- 1 boinc boinc       105 Nov 26 17:52 job.xml
[2025-11-27 02:00:17] -rw-r--r-- 2 boinc boinc 409462541 Nov 26 17:52 EVNT.47483658._000715.pool.root.1
[2025-11-27 02:00:17] -rw-r--r-- 2 boinc boinc    590100 Nov 26 17:52 input.tar.gz
[2025-11-27 02:00:17] -rw-r--r-- 2 boinc boinc     15847 Nov 26 17:52 start_atlas.sh
[2025-11-27 02:00:17] drwxrwx--x 2 boinc boinc      4096 Nov 26 17:52 shared
[2025-11-27 02:00:17] -rw-r--r-- 1 boinc boinc         0 Nov 26 17:52 boinc_setup_complete
[2025-11-27 02:00:17] -rw-r--r-- 1 boinc boinc      6447 Nov 26 17:52 init_data.xml
[2025-11-27 02:00:17] -rw-r--r-- 1 boinc boinc         0 Nov 26 17:52 boinc_lockfile
[2025-11-27 02:00:17] -rw-r--r-- 1 boinc boinc      2786 Nov 26 17:52 pandaJob.out
[2025-11-27 02:00:17] -rw------- 1 boinc boinc    991545 Nov 26 17:52 agis_schedconf.cvmfs.json
[2025-11-27 02:00:17] drwx------ 5 boinc boinc      4096 Nov 26 17:52 pilot3
[2025-11-27 02:00:17] -rw-r--r-- 1 boinc boinc       531 Nov 27 01:55 boinc_task_state.xml
[2025-11-27 02:00:17] -rw------- 1 boinc boinc 916646804 Nov 27 01:59 HITS.47556137._007105.pool.root.1
[2025-11-27 02:00:17] -rw------- 1 boinc boinc      1022 Nov 27 01:59 memory_monitor_summary.json
[2025-11-27 02:00:17] -rw------- 1 boinc boinc   1516240 Nov 27 01:59 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:00:17] -rw------- 1 boinc boinc   1174190 Nov 27 01:59 log.47556137._007105.job.log.tgz.1
[2025-11-27 02:00:17] -rw------- 1 boinc boinc      8555 Nov 27 01:59 heartbeat.json
[2025-11-27 02:00:17] -rw-r--r-- 1 boinc boinc      8192 Nov 27 01:59 boinc_mmap_file
[2025-11-27 02:00:17] -rw-r--r-- 1 boinc boinc        28 Nov 27 01:59 wrapper_checkpoint.txt
[2025-11-27 02:00:17] -rw------- 1 boinc boinc        95 Nov 27 02:00 pilot_heartbeat.json
[2025-11-27 02:00:17] -rw------- 1 boinc boinc      4824 Nov 27 02:00 pilotlog.txt
[2025-11-27 02:00:17] -rw------- 1 boinc boinc   4115388 Nov 27 02:00 log.47556137._007105.job.log.1
[2025-11-27 02:00:17] -rw------- 1 boinc boinc       353 Nov 27 02:00 output.list
[2025-11-27 02:00:17] -rw-r--r-- 1 boinc boinc       620 Nov 27 02:00 runtime_log
[2025-11-27 02:00:17] -rw------- 1 boinc boinc   5304320 Nov 27 02:00 result.tar.gz
[2025-11-27 02:00:17] -rw-r--r-- 1 boinc boinc      8898 Nov 27 02:00 runtime_log.err
[2025-11-27 02:00:17] -rw------- 1 boinc boinc       665 Nov 27 02:00 6OuMDmkkNh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbWIKDm9Q0BRm.diag
[2025-11-27 02:00:17] -rw-r--r-- 1 boinc boinc      8190 Nov 27 02:00 stderr.txt
[2025-11-27 02:00:17] HITS file was successfully produced:
[2025-11-27 02:00:17] -rw------- 1 boinc boinc 916646804 Nov 27 01:59 shared/HITS.pool.root.1
[2025-11-27 02:00:17]  *** Contents of shared directory: ***
[2025-11-27 02:00:17] total 1300812
[2025-11-27 02:00:17] -rw-r--r-- 2 boinc boinc 409462541 Nov 26 17:52 ATLAS.root_0
[2025-11-27 02:00:17] -rw-r--r-- 2 boinc boinc    590100 Nov 26 17:52 input.tar.gz
[2025-11-27 02:00:17] -rw-r--r-- 2 boinc boinc     15847 Nov 26 17:52 start_atlas.sh
[2025-11-27 02:00:17] -rw------- 1 boinc boinc 916646804 Nov 27 01:59 HITS.pool.root.1
[2025-11-27 02:00:17] -rw------- 1 boinc boinc   5304320 Nov 27 02:00 result.tar.gz
02:00:18 (1486453): run_atlas exited; CPU time 86195.283534
02:00:18 (1486453): called boinc_finish(0)

</stderr_txt>
]]>

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