Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:12:44 (140952): wrapper (7.7.26015): starting
22:12:44 (140952): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 22:12:44] Arguments: --nthreads 12
[2025-11-23 22:12:44] Threads: 12
[2025-11-23 22:12:44] Checking for CVMFS
[2025-11-23 22:12:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 22:12:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 22:12:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 22:12:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 22:12:46] 2.11.5.0 2097640 24836 212360 153235 1 352 36282424 45568001 18002 130560 0 249069295 99.804 136632992 22432 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-23 22:12:46] CVMFS is ok
[2025-11-23 22:12:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 22:12:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 22:12:46] Further information can be found at the LHC@home message board.
[2025-11-23 22:12:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 22:12:46] Checking for apptainer binary...
[2025-11-23 22:12:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 22:12:46] Running /usr/bin/apptainer --version
[2025-11-23 22:12:46] apptainer version 1.4.1-1.el9
[2025-11-23 22:12:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 22:12:46] wns0049.triumf.lcg
[2025-11-23 22:12:46] apptainer works
[2025-11-23 22:12:46] Set ATHENA_PROC_NUMBER=12
[2025-11-23 22:12:46] Set ATHENA_CORE_NUMBER=12
[2025-11-23 22:12:46] Starting ATLAS job with PandaID=6895369439
[2025-11-23 22:12:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 22:18:05]  *** The last 200 lines of the pilot log: ***
[2025-11-23 22:18:05] 2025-11-24 06:17:11,218 | INFO     | could have reported an average CPU frequency of 2569 MHz (4 samples)
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | ..............................
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . Timing measurements:
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . get job = 0 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . initial setup = 3 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . payload setup = 9 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . stage-in = 0 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . payload execution = 94 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . stage-out = 0 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . log creation = 0 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | ..............................
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895369439/pilotlog.txt
[2025-11-23 22:18:05] 2025-11-24 06:17:11,231 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-23 22:18:05] - Log from pilotlog.txt -
[2025-11-23 22:18:05] 2025-11-24 06:17:11,214 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895369439/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 22:18:05] 2025-11-24 06:17:11,217 | INFO     | extracted standard info from prmon json
[2025-11-23 22:18:05] 2025-11-24 06:17:11,217 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 22:18:05] 2025-11-24 06:17:11,217 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 22:18:05] 2025-11-24 06:17:11,217 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-23 22:18:05] 2025-11-24 06:17:11,217 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 22:18:05] 2025-11-24 06:17:11,218 | WARNING  | wrong length of table data, x=[1763964818.0, 1763964879.0], y=[1943.0, 385771.0] (must be same and length>=4)
[2025-11-23 22:18:05] 2025-11-24 06:17:11,218 | INFO     | could have reported an average CPU frequency of 2569 MHz (4 samples)
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | ..............................
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . Timing measurements:
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . get job = 0 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . initial setup = 3 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . payload setup = 9 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . stage-in = 0 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . payload execution = 94 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . stage-out = 0 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . log creation = 0 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | ..............................
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895369439/pilotlog.txt
[2025-11-23 22:18:05] 2025-11-24 06:17:11,233 | WARNING  | 
[2025-11-23 22:18:05] [begin log extracts]
[2025-11-23 22:18:05] - Log from pilotlog.txt -
[2025-11-23 22:18:05] 2025-11-24 06:17:11,214 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895369439/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 22:18:05] 2025-11-24 06:17:11,217 | INFO     | extracted standard info from prmon json
[2025-11-23 22:18:05] 2025-11-24 06:17:11,217 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 22:18:05] 2025-11-24 06:17:11,217 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 22:18:05] 2025-11-24 06:17:11,217 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-23 22:18:05] 2025-11-24 06:17:11,217 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 22:18:05] 2025-11-24 06:17:11,218 | WARNING  | wrong length of table data, x=[1763964818.0, 1763964879.0], y=[1943.0, 385771.0] (must be same and length>=4)
[2025-11-23 22:18:05] 2025-11-24 06:17:11,218 | INFO     | could have reported an average CPU frequency of 2569 MHz (4 samples)
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | ..............................
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . Timing measurements:
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . get job = 0 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . initial setup = 3 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . payload setup = 9 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . stage-in = 0 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . payload execution = 94 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . stage-out = 0 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | . log creation = 0 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | ..............................
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 22:18:05] 2025-11-24 06:17:11,219 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895369439/pilotlog.txt
[2025-11-23 22:18:05] [end log extracts]
[2025-11-23 22:18:05] 2025-11-24 06:17:11,233 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-23 22:18:05] 2025-11-24 06:17:11,233 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-23 22:18:05] 2025-11-24 06:17:11,290 | INFO     | 
[2025-11-23 22:18:05] 2025-11-24 06:17:11,290 | INFO     | job summary report
[2025-11-23 22:18:05] 2025-11-24 06:17:11,291 | INFO     | --------------------------------------------------
[2025-11-23 22:18:05] 2025-11-24 06:17:11,291 | INFO     | PanDA job id: 6895369439
[2025-11-23 22:18:05] 2025-11-24 06:17:11,291 | INFO     | task id: 47556137
[2025-11-23 22:18:05] 2025-11-24 06:17:11,291 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-23 22:14:59,742 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-23 22:18:05] 2025-11-24 06:17:11,291 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-23 22:18:05] 2025-11-24 06:17:11,291 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 22:18:05] 2025-11-24 06:17:11,291 | INFO     | pilot state: failed 
[2025-11-23 22:18:05] 2025-11-24 06:17:11,291 | INFO     | transexitcode: 65
[2025-11-23 22:18:05] 2025-11-24 06:17:11,291 | INFO     | exeerrorcode: 65
[2025-11-23 22:18:05] 2025-11-24 06:17:11,291 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-23 22:18:05] 2025-11-24 06:17:11,291 | INFO     | exitcode: 65
[2025-11-23 22:18:05] 2025-11-24 06:17:11,291 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-23 22:18:05] 2025-11-24 06:17:11,291 | INFO     | cpuconsumptiontime: 45 s
[2025-11-23 22:18:05] 2025-11-24 06:17:11,291 | INFO     | nevents: 0
[2025-11-23 22:18:05] 2025-11-24 06:17:11,291 | INFO     | neventsw: 0
[2025-11-23 22:18:05] 2025-11-24 06:17:11,291 | INFO     | pid: 151859
[2025-11-23 22:18:05] 2025-11-24 06:17:11,291 | INFO     | pgrp: 151859
[2025-11-23 22:18:05] 2025-11-24 06:17:11,291 | INFO     | corecount: 12
[2025-11-23 22:18:05] 2025-11-24 06:17:11,291 | INFO     | event service: False
[2025-11-23 22:18:05] 2025-11-24 06:17:11,291 | INFO     | sizes: {0: 2297979, 1: 2298661, 2: 2298860, 9: 2299122, 12: 2299150, 108: 2324674, 109: 2328964, 110: 2329020, 232: 2329186}
[2025-11-23 22:18:05] 2025-11-24 06:17:11,291 | INFO     | --------------------------------------------------
[2025-11-23 22:18:05] 2025-11-24 06:17:11,292 | INFO     | 
[2025-11-23 22:18:05] 2025-11-24 06:17:11,292 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-23 22:18:05] 2025-11-24 06:17:11,309 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 22:18:05] 2025-11-24 06:17:11,310 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 22:18:05] 2025-11-24 06:17:11,310 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 22:18:05] 2025-11-24 06:17:11,310 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 22:18:05] 2025-11-24 06:17:11,310 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 22:18:05] 2025-11-24 06:17:11,310 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 22:18:05] 2025-11-24 06:17:11,310 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 22:18:05] 2025-11-24 06:17:11,310 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 22:18:05] 2025-11-24 06:17:11,310 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 22:18:05] 2025-11-24 06:17:11,310 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 22:18:05] 2025-11-24 06:17:11,310 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 22:18:05] 2025-11-24 06:17:11,310 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 22:18:05] 2025-11-24 06:17:11,310 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 22:18:05] 2025-11-24 06:17:11,310 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 22:18:05] 2025-11-24 06:17:11,310 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 22:18:05] 2025-11-24 06:17:11,310 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 22:18:05] 2025-11-24 06:17:11,311 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 22:18:05] 2025-11-24 06:17:11,311 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 22:18:05] 2025-11-24 06:17:11,311 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 22:18:05] 2025-11-24 06:17:11,311 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 22:18:05] 2025-11-24 06:17:11,311 | INFO     | job 6895369439 has completed (purged errors)
[2025-11-23 22:18:05] 2025-11-24 06:17:11,311 | INFO     | overall cleanup function is called
[2025-11-23 22:18:05] 2025-11-24 06:17:12,327 | INFO     | --- collectZombieJob: --- 10, [151859]
[2025-11-23 22:18:05] 2025-11-24 06:17:12,327 | INFO     | zombie collector waiting for pid 151859
[2025-11-23 22:18:05] 2025-11-24 06:17:12,327 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 22:18:05] 2025-11-24 06:17:12,327 | INFO     | collected zombie processes
[2025-11-23 22:18:05] 2025-11-24 06:17:12,328 | INFO     | will attempt to kill all subprocesses of pid=151859
[2025-11-23 22:18:05] 2025-11-24 06:17:12,491 | INFO     | process IDs to be killed: [151859] (in reverse order)
[2025-11-23 22:18:05] 2025-11-24 06:17:12,554 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 22:18:05] 2025-11-24 06:17:12,554 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 22:18:05] 2025-11-24 06:17:12,561 | INFO     | did not find any defunct processes belonging to 151859
[2025-11-23 22:18:05] 2025-11-24 06:17:12,568 | INFO     | did not find any defunct processes belonging to 151859
[2025-11-23 22:18:05] 2025-11-24 06:17:12,568 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 22:18:05] 2025-11-24 06:17:12,569 | INFO     | ready for new job
[2025-11-23 22:18:05] 2025-11-24 06:17:12,569 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 22:18:05] 2025-11-24 06:17:12,570 | INFO     | ***************************************
[2025-11-23 22:18:05] 2025-11-24 06:17:12,570 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 22:18:05] 2025-11-24 06:17:12,570 | INFO     | ***************************************
[2025-11-23 22:18:05] 2025-11-24 06:17:12,570 | INFO     | 
[2025-11-23 22:18:05] 2025-11-24 06:17:12,572 | INFO     | architecture information:
[2025-11-23 22:18:05] 2025-11-24 06:17:12,572 | INFO     | executing command: cat /etc/os-release
[2025-11-23 22:18:05] 2025-11-24 06:17:12,583 | INFO     | cat /etc/os-release:
[2025-11-23 22:18:05] NAME="CentOS Linux"
[2025-11-23 22:18:05] VERSION="7 (Core)"
[2025-11-23 22:18:05] ID="centos"
[2025-11-23 22:18:05] ID_LIKE="rhel fedora"
[2025-11-23 22:18:05] VERSION_ID="7"
[2025-11-23 22:18:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 22:18:05] ANSI_COLOR="0;31"
[2025-11-23 22:18:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 22:18:05] HOME_URL="https://www.centos.org/"
[2025-11-23 22:18:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 22:18:05] 
[2025-11-23 22:18:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 22:18:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 22:18:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 22:18:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 22:18:05] 
[2025-11-23 22:18:05] 2025-11-24 06:17:12,583 | INFO     | ***************************************
[2025-11-23 22:18:05] 2025-11-24 06:17:13,086 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-23 22:18:05] 2025-11-24 06:17:13,102 | INFO     | sufficient remaining disk space (1868737544192 B)
[2025-11-23 22:18:05] 2025-11-24 06:17:13,103 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 22:18:05] 2025-11-24 06:17:13,103 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 22:18:05] 2025-11-24 06:17:13,107 | INFO     | update_server=False
[2025-11-23 22:18:05] 2025-11-24 06:17:13,107 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 22:18:05] 2025-11-24 06:17:13,108 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 22:18:05] 2025-11-24 06:17:13,239 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 22:18:05] 2025-11-24 06:17:13,239 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 22:18:05] 2025-11-24 06:17:13,239 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 22:18:05] 2025-11-24 06:17:13,240 | INFO     | will abort loop
[2025-11-23 22:18:05] 2025-11-24 06:17:13,269 | INFO     | all job control threads have been joined
[2025-11-23 22:18:05] 2025-11-24 06:17:13,472 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 22:18:05] 2025-11-24 06:17:13,585 | INFO     | all payload control threads have been joined
[2025-11-23 22:18:05] 2025-11-24 06:17:13,866 | INFO     | all data control threads have been joined
[2025-11-23 22:18:05] 2025-11-24 06:17:14,115 | INFO     | [job] queue monitor thread has finished
[2025-11-23 22:18:05] 2025-11-24 06:17:14,116 | INFO     | [job] retrieve thread has finished
[2025-11-23 22:18:05] 2025-11-24 06:17:14,230 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 22:18:05] 2025-11-24 06:17:14,245 | INFO     | [job] job monitor thread has finished
[2025-11-23 22:18:05] 2025-11-24 06:17:14,275 | INFO     | [job] control thread has finished
[2025-11-23 22:18:05] 2025-11-24 06:17:14,312 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 22:18:05] 2025-11-24 06:17:14,590 | INFO     | [payload] control thread has finished
[2025-11-23 22:18:05] 2025-11-24 06:17:14,682 | INFO     | [job] validate thread has finished
[2025-11-23 22:18:05] 2025-11-24 06:17:14,741 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 22:18:05] 2025-11-24 06:17:14,747 | INFO     | [payload] validate_post thread has finished
[2025-11-23 22:18:05] 2025-11-24 06:17:14,871 | INFO     | [data] control thread has finished
[2025-11-23 22:18:05] 2025-11-24 06:17:15,049 | INFO     | [data] copytool_in thread has finished
[2025-11-23 22:18:05] 2025-11-24 06:17:15,125 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 22:18:05] 2025-11-24 06:17:15,230 | INFO     | [payload] failed_post thread has finished
[2025-11-23 22:18:05] 2025-11-24 06:17:15,479 | INFO     | [data] copytool_out thread has finished
[2025-11-23 22:18:05] 2025-11-24 06:17:16,467 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 22:18:05] 2025-11-24 06:17:20,489 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 22:18:05] 2025-11-24 06:17:44,219 | INFO     | PID=144787 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-23 22:18:05] 2025-11-24 06:17:44,219 | INFO     | .. there are 21 such processes running
[2025-11-23 22:18:05] 2025-11-24 06:17:44,220 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 22:18:05] 2025-11-24 06:17:44,220 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 22:18:05] 2025-11-24 06:17:44,220 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 22:18:05] 2025-11-24 06:18:00,135 | INFO     | [monitor] cgroup control has ended
[2025-11-23 22:18:05] 2025-11-24 06:18:00,195 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139671440762688)>', '<ExcThread(monitor, started 139670381913856)>']
[2025-11-23 22:18:05] 2025-11-24 06:18:00,326 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 22:18:05] 2025-11-24 06:18:00,326 | INFO     | [monitor] control thread has ended
[2025-11-23 22:18:05] 2025-11-24 06:18:05,220 | INFO     | all workflow threads have been joined
[2025-11-23 22:18:05] 2025-11-24 06:18:05,220 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 22:18:05] 2025-11-24 06:18:05,221 | INFO     | traces error code: 0
[2025-11-23 22:18:05] 2025-11-24 06:18:05,221 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 22:18:05] 2025-11-24 06:18:05,339 [wrapper] ==== pilot stdout END ====
[2025-11-23 22:18:05] 2025-11-24 06:18:05,342 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 22:18:05] 2025-11-24 06:18:05,345 [wrapper] pilotpid: 144787
[2025-11-23 22:18:05] 2025-11-24 06:18:05,347 [wrapper] Pilot exit status: 0
[2025-11-23 22:18:05] 2025-11-24 06:18:05,357 [wrapper] pandaids: 6895369439
[2025-11-23 22:18:05] 2025-11-24 06:18:05,400 [wrapper] cleanup supervisor_pilot  144793 144788
[2025-11-23 22:18:05] 2025-11-24 06:18:05,403 [wrapper] Test setup, not cleaning
[2025-11-23 22:18:05] 2025-11-24 06:18:05,405 [wrapper] apfmon messages muted
[2025-11-23 22:18:05] 2025-11-24 06:18:05,407 [wrapper] ==== wrapper stdout END ====
[2025-11-23 22:18:05] 2025-11-24 06:18:05,410 [wrapper] ==== wrapper stderr END ====
[2025-11-23 22:18:05]  *** Error codes and diagnostics ***
[2025-11-23 22:18:05]     "exeErrorCode": 65,
[2025-11-23 22:18:05]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-23 22:18:05]     "pilotErrorCode": 1305,
[2025-11-23 22:18:05]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-23 22:18:05]  *** Listing of results directory ***
[2025-11-23 22:18:05] total 404224
[2025-11-23 22:18:05] -rw-r--r--. 1 boinc boinc    576529 Nov 23 12:16 pilot3.tar.gz
[2025-11-23 22:18:05] -rwx------. 1 boinc boinc     36292 Nov 23 12:21 runpilot2-wrapper.sh
[2025-11-23 22:18:05] -rw-r--r--. 1 boinc boinc      5112 Nov 23 12:21 queuedata.json
[2025-11-23 22:18:05] -rw-r--r--. 1 boinc boinc       100 Nov 23 22:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 22:18:05] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 22:12 run_atlas
[2025-11-23 22:18:05] -rw-r--r--. 1 boinc boinc       105 Nov 23 22:12 job.xml
[2025-11-23 22:18:05] -rw-r--r--. 1 boinc boinc      6594 Nov 23 22:12 init_data.xml
[2025-11-23 22:18:05] -rw-r--r--. 2 boinc boinc 409701416 Nov 23 22:12 EVNT.47483658._000885.pool.root.1
[2025-11-23 22:18:05] -rw-r--r--. 2 boinc boinc     15847 Nov 23 22:12 start_atlas.sh
[2025-11-23 22:18:05] drwxrwx--x. 2 boinc boinc      4096 Nov 23 22:12 shared
[2025-11-23 22:18:05] -rw-r--r--. 2 boinc boinc    590103 Nov 23 22:12 input.tar.gz
[2025-11-23 22:18:05] -rw-r--r--. 1 boinc boinc         0 Nov 23 22:12 boinc_lockfile
[2025-11-23 22:18:05] -rw-r--r--. 1 boinc boinc      2786 Nov 23 22:12 pandaJob.out
[2025-11-23 22:18:05] -rw-------. 1 boinc boinc    989786 Nov 23 22:12 agis_schedconf.cvmfs.json
[2025-11-23 22:18:05] -rw-------. 1 boinc boinc   1526164 Nov 23 22:12 agis_ddmendpoints.agis.ALL.json
[2025-11-23 22:18:05] drwx------. 5 boinc boinc      4096 Nov 23 22:13 pilot3
[2025-11-23 22:18:05] -rw-r--r--. 1 boinc boinc       524 Nov 23 22:14 boinc_task_state.xml
[2025-11-23 22:18:05] -rw-------. 1 boinc boinc       993 Nov 23 22:15 memory_monitor_summary.json
[2025-11-23 22:18:05] -rw-------. 1 boinc boinc     49174 Nov 23 22:15 log.47556137._008717.job.log.tgz.1
[2025-11-23 22:18:05] -rw-------. 1 boinc boinc        95 Nov 23 22:17 pilot_heartbeat.json
[2025-11-23 22:18:05] -rw-------. 1 boinc boinc     10335 Nov 23 22:17 heartbeat.json
[2025-11-23 22:18:05] -rw-r--r--. 1 boinc boinc      8192 Nov 23 22:18 boinc_mmap_file
[2025-11-23 22:18:05] -rw-r--r--. 1 boinc boinc        23 Nov 23 22:18 wrapper_checkpoint.txt
[2025-11-23 22:18:05] -rw-------. 1 boinc boinc      5008 Nov 23 22:18 pilotlog.txt
[2025-11-23 22:18:05] -rw-------. 1 boinc boinc     99136 Nov 23 22:18 log.47556137._008717.job.log.1
[2025-11-23 22:18:05] -rw-------. 1 boinc boinc       186 Nov 23 22:18 output.list
[2025-11-23 22:18:05] -rw-r--r--. 1 boinc boinc       620 Nov 23 22:18 runtime_log
[2025-11-23 22:18:05] -rw-------. 1 boinc boinc    174080 Nov 23 22:18 result.tar.gz
[2025-11-23 22:18:05] -rw-------. 1 boinc boinc       645 Nov 23 22:18 zaJODmplVh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGBLKDmWNWerm.diag
[2025-11-23 22:18:05] -rw-r--r--. 1 boinc boinc      8636 Nov 23 22:18 runtime_log.err
[2025-11-23 22:18:05] -rw-r--r--. 1 boinc boinc     22441 Nov 23 22:18 stderr.txt
[2025-11-23 22:18:05] No HITS result produced
[2025-11-23 22:18:05]  *** Contents of shared directory: ***
[2025-11-23 22:18:05] total 400872
[2025-11-23 22:18:05] -rw-r--r--. 2 boinc boinc 409701416 Nov 23 22:12 ATLAS.root_0
[2025-11-23 22:18:05] -rw-r--r--. 2 boinc boinc     15847 Nov 23 22:12 start_atlas.sh
[2025-11-23 22:18:05] -rw-r--r--. 2 boinc boinc    590103 Nov 23 22:12 input.tar.gz
[2025-11-23 22:18:05] -rw-------. 1 boinc boinc    174080 Nov 23 22:18 result.tar.gz
22:18:06 (140952): run_atlas exited; CPU time 44.461406
22:18:06 (140952): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN