Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:21:52 (25339): wrapper (7.7.26015): starting
01:21:52 (25339): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 01:21:52] Arguments: --nthreads 8
[2025-11-24 01:21:52] Threads: 8
[2025-11-24 01:21:52] Checking for CVMFS
[2025-11-24 01:21:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 01:21:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 01:21:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 01:21:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 01:21:52] 2.11.2.0 2802 70053 80800 153236 3 1 14294018 20275200 1 130560 0 19874708 99.916 3391795 20941 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 01:21:52] CVMFS is ok
[2025-11-24 01:21:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 01:21:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 01:21:52] Further information can be found at the LHC@home message board.
[2025-11-24 01:21:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 01:21:52] Checking for apptainer binary...
[2025-11-24 01:21:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 01:21:52] Running /usr/bin/apptainer --version
[2025-11-24 01:21:52] apptainer version 1.3.2-1.el7
[2025-11-24 01:21:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 01:21:54] c-204-8.aglt2.org
[2025-11-24 01:21:54] apptainer works
[2025-11-24 01:21:54] Set ATHENA_PROC_NUMBER=8
[2025-11-24 01:21:54] Set ATHENA_CORE_NUMBER=8
[2025-11-24 01:21:54] Starting ATLAS job with PandaID=6895356979
[2025-11-24 01:21:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 14:21:36]  *** The last 200 lines of the pilot log: ***
[2025-11-24 14:21:36] 2025-11-24 19:20:41,101 | INFO     | PID=29147 has CPU usage=14.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 14:21:36] 2025-11-24 19:20:42,006 | INFO     | monitor loop #3439: job 0:6895356979 is in state 'finished'
[2025-11-24 14:21:36] 2025-11-24 19:20:42,013 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 14:21:36] 2025-11-24 19:20:42,101 | INFO     | time since job start (46710s) is within the limit (172800.0s)
[2025-11-24 14:21:36] 2025-11-24 19:20:43,380 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-24 14:21:36] 2025-11-24 19:20:43,384 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-11-24 14:21:36] 2025-11-24 19:20:43,385 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895356979/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 14:21:36] 2025-11-24 19:20:43,386 | INFO     | extracted standard info from prmon json
[2025-11-24 14:21:36] 2025-11-24 19:20:43,387 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 14:21:36] 2025-11-24 19:20:43,387 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 14:21:36] 2025-11-24 19:20:43,401 | INFO     | fitting pss+swap vs Time
[2025-11-24 14:21:36] 2025-11-24 19:20:43,402 | INFO     | sum of square deviations: 138823281935.10587
[2025-11-24 14:21:36] 2025-11-24 19:20:43,414 | INFO     | sum of deviations: 795451728762.4989
[2025-11-24 14:21:36] 2025-11-24 19:20:43,414 | INFO     | mean x: 1763988666.4862745
[2025-11-24 14:21:36] 2025-11-24 19:20:43,414 | INFO     | mean y: 2887278.2379084965
[2025-11-24 14:21:36] 2025-11-24 19:20:43,414 | INFO     | intersect: -10104695648.161173
[2025-11-24 14:21:36] 2025-11-24 19:20:43,415 | INFO     | chi2: 5.291037467579149
[2025-11-24 14:21:36] 2025-11-24 19:20:43,416 | INFO     | sum of square deviations: 136119121433.91582
[2025-11-24 14:21:36] 2025-11-24 19:20:43,428 | INFO     | sum of deviations: 1037775884806.5385
[2025-11-24 14:21:36] 2025-11-24 19:20:43,428 | INFO     | mean x: 1763988513.9894736
[2025-11-24 14:21:36] 2025-11-24 19:20:43,428 | INFO     | mean y: 2900939.817105263
[2025-11-24 14:21:36] 2025-11-24 19:20:43,428 | INFO     | intersect: -13445795478.50898
[2025-11-24 14:21:36] 2025-11-24 19:20:43,429 | INFO     | chi2: 2.413197531068446
[2025-11-24 14:21:36] 2025-11-24 19:20:43,429 | INFO     | current chi2=2.413197531068446 (change=54.39084402907138 %)
[2025-11-24 14:21:36] 2025-11-24 19:20:43,430 | INFO     | sum of square deviations: 133450264316.6943
[2025-11-24 14:21:36] 2025-11-24 19:20:43,442 | INFO     | sum of deviations: 1060757053458.5424
[2025-11-24 14:21:36] 2025-11-24 19:20:43,442 | INFO     | mean x: 1763988361.4913907
[2025-11-24 14:21:36] 2025-11-24 19:20:43,442 | INFO     | mean y: 2902244.160264901
[2025-11-24 14:21:36] 2025-11-24 19:20:43,442 | INFO     | intersect: -14018524436.796047
[2025-11-24 14:21:36] 2025-11-24 19:20:43,443 | INFO     | chi2: 2.256531899005553
[2025-11-24 14:21:36] 2025-11-24 19:20:43,443 | INFO     | current chi2=2.256531899005553 (change=6.492035154433838 %)
[2025-11-24 14:21:36] 2025-11-24 19:20:43,443 | INFO     | right removable region: 754
[2025-11-24 14:21:36] 2025-11-24 19:20:43,444 | INFO     | sum of square deviations: 136118894513.91583
[2025-11-24 14:21:36] 2025-11-24 19:20:43,456 | INFO     | sum of deviations: 591594674261.3154
[2025-11-24 14:21:36] 2025-11-24 19:20:43,456 | INFO     | mean x: 1763988818.9894736
[2025-11-24 14:21:36] 2025-11-24 19:20:43,457 | INFO     | mean y: 2898755.789473684
[2025-11-24 14:21:36] 2025-11-24 19:20:43,457 | INFO     | intersect: -7663681218.263968
[2025-11-24 14:21:36] 2025-11-24 19:20:43,457 | INFO     | chi2: 3.187040630784977
[2025-11-24 14:21:36] 2025-11-24 19:20:43,458 | INFO     | current chi2=3.187040630784977 (change=39.765298387819406 %)
[2025-11-24 14:21:36] 2025-11-24 19:20:43,459 | INFO     | sum of square deviations: 133449949312.67545
[2025-11-24 14:21:36] 2025-11-24 19:20:43,470 | INFO     | sum of deviations: 546154933455.5559
[2025-11-24 14:21:36] 2025-11-24 19:20:43,471 | INFO     | mean x: 1763988971.4900663
[2025-11-24 14:21:36] 2025-11-24 19:20:43,471 | INFO     | mean y: 2901350.8741721855
[2025-11-24 14:21:36] 2025-11-24 19:20:43,471 | INFO     | intersect: -7216369126.952709
[2025-11-24 14:21:36] 2025-11-24 19:20:43,472 | INFO     | chi2: 3.1377405800897877
[2025-11-24 14:21:36] 2025-11-24 19:20:43,472 | INFO     | current chi2=3.1377405800897877 (change=1.546891188614885 %)
[2025-11-24 14:21:36] 2025-11-24 19:20:43,472 | INFO     | left removable region: 20
[2025-11-24 14:21:36] 2025-11-24 19:20:43,473 | INFO     | sum of square deviations: 122621393915.99464
[2025-11-24 14:21:36] 2025-11-24 19:20:43,484 | INFO     | sum of deviations: 752530659845.5938
[2025-11-24 14:21:36] 2025-11-24 19:20:43,484 | INFO     | mean x: 1763988940.997275
[2025-11-24 14:21:36] 2025-11-24 19:20:43,484 | INFO     | mean y: 2919931.297002725
[2025-11-24 14:21:36] 2025-11-24 19:20:43,484 | INFO     | intersect: -10822725735.709702
[2025-11-24 14:21:36] 2025-11-24 19:20:43,485 | INFO     | chi2: 0.06400744125932302
[2025-11-24 14:21:36] 2025-11-24 19:20:43,485 | INFO     | current memory leak: 6.14 B/s (using 734 data points, chi2=0.06)
[2025-11-24 14:21:36] 2025-11-24 19:20:43,486 | INFO     | could have reported an average CPU frequency of 2172 MHz (29 samples)
[2025-11-24 14:21:36] 2025-11-24 19:20:43,486 | INFO     | ..............................
[2025-11-24 14:21:36] 2025-11-24 19:20:43,486 | INFO     | . Timing measurements:
[2025-11-24 14:21:36] 2025-11-24 19:20:43,486 | INFO     | . get job = 0 s
[2025-11-24 14:21:36] 2025-11-24 19:20:43,486 | INFO     | . initial setup = 2 s
[2025-11-24 14:21:36] 2025-11-24 19:20:43,486 | INFO     | . payload setup = 9 s
[2025-11-24 14:21:36] 2025-11-24 19:20:43,486 | INFO     | . stage-in = 0 s
[2025-11-24 14:21:36] 2025-11-24 19:20:43,486 | INFO     | . payload execution = 46666 s
[2025-11-24 14:21:36] 2025-11-24 19:20:43,487 | INFO     | . stage-out = 3 s
[2025-11-24 14:21:36] 2025-11-24 19:20:43,487 | INFO     | . log creation = 0 s
[2025-11-24 14:21:36] 2025-11-24 19:20:43,487 | INFO     | ..............................
[2025-11-24 14:21:36] 2025-11-24 19:20:43,576 | INFO     | 
[2025-11-24 14:21:36] 2025-11-24 19:20:43,576 | INFO     | job summary report
[2025-11-24 14:21:36] 2025-11-24 19:20:43,577 | INFO     | --------------------------------------------------
[2025-11-24 14:21:36] 2025-11-24 19:20:43,577 | INFO     | PanDA job id: 6895356979
[2025-11-24 14:21:36] 2025-11-24 19:20:43,577 | INFO     | task id: 47556137
[2025-11-24 14:21:36] 2025-11-24 19:20:43,577 | INFO     | errors: (none)
[2025-11-24 14:21:36] 2025-11-24 19:20:43,577 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 14:21:36] 2025-11-24 19:20:43,578 | INFO     | pilot state: finished 
[2025-11-24 14:21:36] 2025-11-24 19:20:43,578 | INFO     | transexitcode: 0
[2025-11-24 14:21:36] 2025-11-24 19:20:43,578 | INFO     | exeerrorcode: 0
[2025-11-24 14:21:36] 2025-11-24 19:20:43,578 | INFO     | exeerrordiag: 
[2025-11-24 14:21:36] 2025-11-24 19:20:43,578 | INFO     | exitcode: 0
[2025-11-24 14:21:36] 2025-11-24 19:20:43,578 | INFO     | exitmsg: OK
[2025-11-24 14:21:36] 2025-11-24 19:20:43,579 | INFO     | cpuconsumptiontime: 362008 s
[2025-11-24 14:21:36] 2025-11-24 19:20:43,579 | INFO     | nevents: 1000
[2025-11-24 14:21:36] 2025-11-24 19:20:43,579 | INFO     | neventsw: 0
[2025-11-24 14:21:36] 2025-11-24 19:20:43,579 | INFO     | pid: 3175
[2025-11-24 14:21:36] 2025-11-24 19:20:43,579 | INFO     | pgrp: 3175
[2025-11-24 14:21:36] 2025-11-24 19:20:43,579 | INFO     | corecount: 8
[2025-11-24 14:21:36] 2025-11-24 19:20:43,580 | INFO     | event service: False
[2025-11-24 14:21:36] 2025-11-24 19:20:43,580 | INFO     | sizes: {0: 2298580, 1: 2298835, 7: 2299097, 12: 2299125, 46679: 2345689, 46684: 2355474, 46687: 2355658, 46695: 2355904}
[2025-11-24 14:21:36] 2025-11-24 19:20:43,580 | INFO     | --------------------------------------------------
[2025-11-24 14:21:36] 2025-11-24 19:20:43,580 | INFO     | 
[2025-11-24 14:21:36] 2025-11-24 19:20:43,580 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 14:21:36] 2025-11-24 19:20:43,608 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 14:21:36] 2025-11-24 19:20:43,608 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 14:21:36] 2025-11-24 19:20:43,608 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 14:21:36] 2025-11-24 19:20:43,609 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 14:21:36] 2025-11-24 19:20:43,609 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 14:21:36] 2025-11-24 19:20:43,609 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 14:21:36] 2025-11-24 19:20:43,609 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 14:21:36] 2025-11-24 19:20:43,609 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 14:21:36] 2025-11-24 19:20:43,609 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 14:21:36] 2025-11-24 19:20:43,610 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 14:21:36] 2025-11-24 19:20:43,610 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 14:21:36] 2025-11-24 19:20:43,610 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 14:21:36] 2025-11-24 19:20:43,610 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 14:21:36] 2025-11-24 19:20:43,610 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 14:21:36] 2025-11-24 19:20:43,611 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 14:21:36] 2025-11-24 19:20:43,611 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 14:21:36] 2025-11-24 19:20:43,611 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 14:21:36] 2025-11-24 19:20:43,611 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 14:21:36] 2025-11-24 19:20:43,611 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 14:21:36] 2025-11-24 19:20:43,612 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 14:21:36] 2025-11-24 19:20:43,612 | INFO     | job 6895356979 has completed (purged errors)
[2025-11-24 14:21:36] 2025-11-24 19:20:43,612 | INFO     | overall cleanup function is called
[2025-11-24 14:21:36] 2025-11-24 19:20:44,627 | INFO     | --- collectZombieJob: --- 10, [3175]
[2025-11-24 14:21:36] 2025-11-24 19:20:44,627 | INFO     | zombie collector waiting for pid 3175
[2025-11-24 14:21:36] 2025-11-24 19:20:44,628 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 14:21:36] 2025-11-24 19:20:44,628 | INFO     | collected zombie processes
[2025-11-24 14:21:36] 2025-11-24 19:20:44,628 | INFO     | will attempt to kill all subprocesses of pid=3175
[2025-11-24 14:21:36] 2025-11-24 19:20:44,723 | INFO     | process IDs to be killed: [3175] (in reverse order)
[2025-11-24 14:21:36] 2025-11-24 19:20:44,785 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 14:21:36] 2025-11-24 19:20:44,785 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 14:21:36] 2025-11-24 19:20:44,790 | INFO     | did not find any defunct processes belonging to 3175
[2025-11-24 14:21:36] 2025-11-24 19:20:44,794 | INFO     | did not find any defunct processes belonging to 3175
[2025-11-24 14:21:36] 2025-11-24 19:20:44,796 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 14:21:36] 2025-11-24 19:20:44,796 | INFO     | ready for new job
[2025-11-24 14:21:36] 2025-11-24 19:20:44,796 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 14:21:36] 2025-11-24 19:20:44,800 | INFO     | ***************************************
[2025-11-24 14:21:36] 2025-11-24 19:20:44,800 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 14:21:36] 2025-11-24 19:20:44,800 | INFO     | ***************************************
[2025-11-24 14:21:36] 2025-11-24 19:20:44,800 | INFO     | 
[2025-11-24 14:21:36] 2025-11-24 19:20:44,801 | INFO     | architecture information:
[2025-11-24 14:21:36] 2025-11-24 19:20:44,802 | INFO     | executing command: cat /etc/os-release
[2025-11-24 14:21:36] 2025-11-24 19:20:44,822 | INFO     | cat /etc/os-release:
[2025-11-24 14:21:36] NAME="CentOS Linux"
[2025-11-24 14:21:36] VERSION="7 (Core)"
[2025-11-24 14:21:36] ID="centos"
[2025-11-24 14:21:36] ID_LIKE="rhel fedora"
[2025-11-24 14:21:36] VERSION_ID="7"
[2025-11-24 14:21:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 14:21:36] ANSI_COLOR="0;31"
[2025-11-24 14:21:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 14:21:36] HOME_URL="https://www.centos.org/"
[2025-11-24 14:21:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 14:21:36] 
[2025-11-24 14:21:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 14:21:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 14:21:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 14:21:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 14:21:36] 
[2025-11-24 14:21:36] 2025-11-24 19:20:44,822 | INFO     | ***************************************
[2025-11-24 14:21:36] 2025-11-24 19:20:45,326 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 14:21:36] 2025-11-24 19:20:45,346 | INFO     | sufficient remaining disk space (17449353216 B)
[2025-11-24 14:21:36] 2025-11-24 19:20:45,346 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 14:21:36] 2025-11-24 19:20:45,347 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 14:21:36] 2025-11-24 19:20:45,347 | INFO     | update_server=False
[2025-11-24 14:21:36] 2025-11-24 19:20:45,347 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 14:21:36] 2025-11-24 19:20:45,348 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:21:36] 2025-11-24 19:20:45,517 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:21:36] 2025-11-24 19:20:45,518 | INFO     | aborting loop
[2025-11-24 14:21:36] 2025-11-24 19:20:45,791 | INFO     | all data control threads have been joined
[2025-11-24 14:21:36] 2025-11-24 19:20:45,947 | INFO     | all payload control threads have been joined
[2025-11-24 14:21:36] 2025-11-24 19:20:45,966 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 14:21:36] 2025-11-24 19:20:45,986 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 14:21:36] 2025-11-24 19:20:46,353 | INFO     | [job] retrieve thread has finished
[2025-11-24 14:21:36] 2025-11-24 19:20:46,353 | INFO     | [job] queue monitor thread has finished
[2025-11-24 14:21:36] 2025-11-24 19:20:46,418 | INFO     | [job] validate thread has finished
[2025-11-24 14:21:36] 2025-11-24 19:20:46,460 | INFO     | [data] copytool_in thread has finished
[2025-11-24 14:21:36] 2025-11-24 19:20:46,461 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 14:21:36] 2025-11-24 19:20:46,523 | INFO     | [job] job monitor thread has finished
[2025-11-24 14:21:36] 2025-11-24 19:20:46,796 | INFO     | [data] control thread has finished
[2025-11-24 14:21:36] 2025-11-24 19:20:46,952 | INFO     | [payload] control thread has finished
[2025-11-24 14:21:36] 2025-11-24 19:20:46,999 | INFO     | all job control threads have been joined
[2025-11-24 14:21:36] 2025-11-24 19:20:47,041 | INFO     | [payload] validate_post thread has finished
[2025-11-24 14:21:36] 2025-11-24 19:20:47,355 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 14:21:36] 2025-11-24 19:20:47,418 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 14:21:36] 2025-11-24 19:20:47,452 | INFO     | [payload] failed_post thread has finished
[2025-11-24 14:21:36] 2025-11-24 19:20:47,568 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 14:21:36] 2025-11-24 19:20:47,971 | INFO     | [data] copytool_out thread has finished
[2025-11-24 14:21:36] 2025-11-24 19:20:48,002 | INFO     | [job] control thread has finished
[2025-11-24 14:21:36] 2025-11-24 19:20:49,990 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 14:21:36] 2025-11-24 19:21:15,324 | INFO     | PID=29147 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 14:21:36] 2025-11-24 19:21:15,324 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 14:21:36] 2025-11-24 19:21:15,325 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 14:21:36] 2025-11-24 19:21:15,325 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 14:21:36] 2025-11-24 19:21:29,149 | INFO     | [monitor] cgroup control has ended
[2025-11-24 14:21:36] 2025-11-24 19:21:31,057 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140554056709952)>', '<ExcThread(monitor, started 140553224165120)>']
[2025-11-24 14:21:36] 2025-11-24 19:21:31,406 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 14:21:36] 2025-11-24 19:21:31,406 | INFO     | [monitor] control thread has ended
[2025-11-24 14:21:36] 2025-11-24 19:21:36,065 | INFO     | all workflow threads have been joined
[2025-11-24 14:21:36] 2025-11-24 19:21:36,066 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 14:21:36] 2025-11-24 19:21:36,066 | INFO     | traces error code: 0
[2025-11-24 14:21:36] 2025-11-24 19:21:36,067 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 14:21:36] 2025-11-24 19:21:36,192 [wrapper] ==== pilot stdout END ====
[2025-11-24 14:21:36] 2025-11-24 19:21:36,197 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 14:21:36] 2025-11-24 19:21:36,202 [wrapper] pilotpid: 29147
[2025-11-24 14:21:36] 2025-11-24 19:21:36,207 [wrapper] Pilot exit status: 0
[2025-11-24 14:21:36] 2025-11-24 19:21:36,225 [wrapper] pandaids: 6895356979
[2025-11-24 14:21:36] 2025-11-24 19:21:36,274 [wrapper] cleanup supervisor_pilot  9826 29148
[2025-11-24 14:21:36] 2025-11-24 19:21:36,280 [wrapper] Test setup, not cleaning
[2025-11-24 14:21:36] 2025-11-24 19:21:36,284 [wrapper] apfmon messages muted
[2025-11-24 14:21:36] 2025-11-24 19:21:36,288 [wrapper] ==== wrapper stdout END ====
[2025-11-24 14:21:36] 2025-11-24 19:21:36,293 [wrapper] ==== wrapper stderr END ====
[2025-11-24 14:21:36]  *** Error codes and diagnostics ***
[2025-11-24 14:21:36]     "exeErrorCode": 0,
[2025-11-24 14:21:36]     "exeErrorDiag": "",
[2025-11-24 14:21:36]     "pilotErrorCode": 0,
[2025-11-24 14:21:36]     "pilotErrorDiag": "",
[2025-11-24 14:21:36]  *** Listing of results directory ***
[2025-11-24 14:21:36] total 1335528
[2025-11-24 14:21:36] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 06:44 pilot3.tar.gz
[2025-11-24 14:21:36] -rwx------ 1 boincer umatlas     36292 Nov 23 06:47 runpilot2-wrapper.sh
[2025-11-24 14:21:36] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 06:47 queuedata.json
[2025-11-24 14:21:36] -rw-r--r-- 1 boincer umatlas       100 Nov 24 01:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 14:21:36] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 01:21 run_atlas
[2025-11-24 14:21:36] -rw-r--r-- 1 boincer umatlas       105 Nov 24 01:21 job.xml
[2025-11-24 14:21:36] -rw-r--r-- 2 boincer umatlas 413414833 Nov 24 01:21 EVNT.47483658._000713.pool.root.1
[2025-11-24 14:21:36] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 01:21 start_atlas.sh
[2025-11-24 14:21:36] drwxrwx--x 2 boincer umatlas      4096 Nov 24 01:21 shared
[2025-11-24 14:21:36] -rw-r--r-- 2 boincer umatlas    590102 Nov 24 01:21 input.tar.gz
[2025-11-24 14:21:36] -rw-r--r-- 1 boincer umatlas         0 Nov 24 01:21 boinc_lockfile
[2025-11-24 14:21:36] -rw-r--r-- 1 boincer umatlas      2786 Nov 24 01:21 pandaJob.out
[2025-11-24 14:21:36] -rw------- 1 boincer umatlas        57 Nov 24 01:21 setup.sh.local
[2025-11-24 14:21:36] -rw------- 1 boincer umatlas    989786 Nov 24 01:22 agis_schedconf.cvmfs.json
[2025-11-24 14:21:36] drwx------ 5 boincer umatlas      4096 Nov 24 01:22 pilot3
[2025-11-24 14:21:36] -rw-r--r-- 1 boincer umatlas       533 Nov 24 14:12 boinc_task_state.xml
[2025-11-24 14:21:36] -rw-r--r-- 1 boincer umatlas      5911 Nov 24 14:19 init_data.xml
[2025-11-24 14:21:36] -rw------- 1 boincer umatlas 933369833 Nov 24 14:19 HITS.47556137._007084.pool.root.1
[2025-11-24 14:21:36] -rw------- 1 boincer umatlas      1062 Nov 24 14:20 memory_monitor_summary.json
[2025-11-24 14:21:36] -rw------- 1 boincer umatlas   1516227 Nov 24 14:20 agis_ddmendpoints.agis.ALL.json
[2025-11-24 14:21:36] -rw------- 1 boincer umatlas   2011621 Nov 24 14:20 log.47556137._007084.job.log.tgz.1
[2025-11-24 14:21:36] -rw------- 1 boincer umatlas        95 Nov 24 14:20 pilot_heartbeat.json
[2025-11-24 14:21:36] -rw------- 1 boincer umatlas      8658 Nov 24 14:20 heartbeat.json
[2025-11-24 14:21:36] -rw-r--r-- 1 boincer umatlas      8192 Nov 24 14:21 boinc_mmap_file
[2025-11-24 14:21:36] -rw-r--r-- 1 boincer umatlas        29 Nov 24 14:21 wrapper_checkpoint.txt
[2025-11-24 14:21:36] -rw------- 1 boincer umatlas      4746 Nov 24 14:21 pilotlog.txt
[2025-11-24 14:21:36] -rw------- 1 boincer umatlas   6424699 Nov 24 14:21 log.47556137._007084.job.log.1
[2025-11-24 14:21:36] -rw------- 1 boincer umatlas       353 Nov 24 14:21 output.list
[2025-11-24 14:21:36] -rw-r--r-- 1 boincer umatlas       620 Nov 24 14:21 runtime_log
[2025-11-24 14:21:36] -rw------- 1 boincer umatlas   8458240 Nov 24 14:21 result.tar.gz
[2025-11-24 14:21:36] -rw-r--r-- 1 boincer umatlas      9338 Nov 24 14:21 runtime_log.err
[2025-11-24 14:21:36] -rw------- 1 boincer umatlas       667 Nov 24 14:21 BirKDmwjNh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWrKKDmBILjNm.diag
[2025-11-24 14:21:36] -rw-r--r-- 1 boincer umatlas     21405 Nov 24 14:21 stderr.txt
[2025-11-24 14:21:36] HITS file was successfully produced:
[2025-11-24 14:21:36] -rw------- 1 boincer umatlas 933369833 Nov 24 14:19 shared/HITS.pool.root.1
[2025-11-24 14:21:36]  *** Contents of shared directory: ***
[2025-11-24 14:21:36] total 1324088
[2025-11-24 14:21:36] -rw-r--r-- 2 boincer umatlas 413414833 Nov 24 01:21 ATLAS.root_0
[2025-11-24 14:21:36] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 01:21 start_atlas.sh
[2025-11-24 14:21:36] -rw-r--r-- 2 boincer umatlas    590102 Nov 24 01:21 input.tar.gz
[2025-11-24 14:21:36] -rw------- 1 boincer umatlas 933369833 Nov 24 14:19 HITS.pool.root.1
[2025-11-24 14:21:36] -rw------- 1 boincer umatlas   8458240 Nov 24 14:21 result.tar.gz
14:21:37 (25339): run_atlas exited; CPU time 357141.785264
14:21:37 (25339): called boinc_finish(0)

</stderr_txt>
]]>

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