Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:51:14 (2972652): wrapper (7.7.26015): starting
15:51:14 (2972652): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 15:51:14] Arguments: --nthreads 3
[2025-11-26 15:51:14] Threads: 3
[2025-11-26 15:51:14] Checking for CVMFS
[2025-11-26 15:51:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 15:51:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 15:51:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 15:51:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 15:51:14] 2.9.2.0 1365516 11313 89868 153324 1 81 33794999 36864000 0 130560 0 4186899 99.935 569840 6110 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 15:51:14] CVMFS is ok
[2025-11-26 15:51:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 15:51:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 15:51:14] Further information can be found at the LHC@home message board.
[2025-11-26 15:51:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 15:51:14] Checking for apptainer binary...
[2025-11-26 15:51:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 15:51:14] Running /usr/bin/apptainer --version
[2025-11-26 15:51:14] apptainer version 1.4.1-1.1
[2025-11-26 15:51:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 15:51:14] cosA125
[2025-11-26 15:51:14] apptainer works
[2025-11-26 15:51:14] Set ATHENA_PROC_NUMBER=3
[2025-11-26 15:51:14] Set ATHENA_CORE_NUMBER=3
[2025-11-26 15:51:14] Starting ATLAS job with PandaID=6895351255
[2025-11-26 15:51:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:03:01]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:03:01] 2025-11-26 23:02:04,301 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:03:01] 2025-11-26 23:02:05,084 | INFO     | time since job start (29445s) is within the limit (172800.0s)
[2025-11-27 00:03:01] 2025-11-26 23:02:05,084 | INFO     | 29445s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 00:03:01] 2025-11-26 23:02:06,170 | INFO     | PID=2976373 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 00:03:01] 2025-11-26 23:02:06,382 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 00:03:01] 2025-11-26 23:02:06,383 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3558.994583333333
[2025-11-27 00:03:01] 2025-11-26 23:02:06,384 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6895351255/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:03:01] 2025-11-26 23:02:06,385 | INFO     | extracted standard info from prmon json
[2025-11-27 00:03:01] 2025-11-26 23:02:06,385 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:03:01] 2025-11-26 23:02:06,385 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:03:01] 2025-11-26 23:02:06,387 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:03:01] 2025-11-26 23:02:06,388 | INFO     | sum of square deviations: 34939602082.0
[2025-11-27 00:03:01] 2025-11-26 23:02:06,389 | INFO     | sum of deviations: 220586822803.0
[2025-11-27 00:03:01] 2025-11-26 23:02:06,389 | INFO     | mean x: 1764183401.0
[2025-11-27 00:03:01] 2025-11-26 23:02:06,389 | INFO     | mean y: 2196032.3995859213
[2025-11-27 00:03:01] 2025-11-26 23:02:06,390 | INFO     | intersect: -11135755978.475319
[2025-11-27 00:03:01] 2025-11-26 23:02:06,390 | INFO     | chi2: 4.1323079858683025
[2025-11-27 00:03:01] 2025-11-26 23:02:06,390 | INFO     | sum of square deviations: 33865712179.5
[2025-11-27 00:03:01] 2025-11-26 23:02:06,392 | INFO     | sum of deviations: 290427505192.49994
[2025-11-27 00:03:01] 2025-11-26 23:02:06,392 | INFO     | mean x: 1764183248.5
[2025-11-27 00:03:01] 2025-11-26 23:02:06,392 | INFO     | mean y: 2205902.4874476986
[2025-11-27 00:03:01] 2025-11-26 23:02:06,392 | INFO     | intersect: -15127177376.048992
[2025-11-27 00:03:01] 2025-11-26 23:02:06,392 | INFO     | chi2: 2.3905924873269777
[2025-11-27 00:03:01] 2025-11-26 23:02:06,392 | INFO     | current chi2=2.3905924873269777 (change=42.148733939910976 %)
[2025-11-27 00:03:01] 2025-11-26 23:02:06,392 | INFO     | sum of square deviations: 32814055252.0
[2025-11-27 00:03:01] 2025-11-26 23:02:06,394 | INFO     | sum of deviations: 286107167718.00006
[2025-11-27 00:03:01] 2025-11-26 23:02:06,394 | INFO     | mean x: 1764183096.0
[2025-11-27 00:03:01] 2025-11-26 23:02:06,394 | INFO     | mean y: 2205275.9894291754
[2025-11-27 00:03:01] 2025-11-26 23:02:06,394 | INFO     | intersect: -15379783480.23931
[2025-11-27 00:03:01] 2025-11-26 23:02:06,394 | INFO     | chi2: 2.3886191863055775
[2025-11-27 00:03:01] 2025-11-26 23:02:06,394 | INFO     | current chi2=2.3886191863055775 (change=0.08254443330936274 %)
[2025-11-27 00:03:01] 2025-11-26 23:02:06,394 | INFO     | right removable region: 472
[2025-11-27 00:03:01] 2025-11-26 23:02:06,395 | INFO     | sum of square deviations: 33865712179.5
[2025-11-27 00:03:01] 2025-11-26 23:02:06,396 | INFO     | sum of deviations: 120876271786.00003
[2025-11-27 00:03:01] 2025-11-26 23:02:06,396 | INFO     | mean x: 1764183553.5
[2025-11-27 00:03:01] 2025-11-26 23:02:06,396 | INFO     | mean y: 2210170.9874476986
[2025-11-27 00:03:01] 2025-11-26 23:02:06,396 | INFO     | intersect: -6294658164.837573
[2025-11-27 00:03:01] 2025-11-26 23:02:06,397 | INFO     | chi2: 2.0951591813808927
[2025-11-27 00:03:01] 2025-11-26 23:02:06,397 | INFO     | current chi2=2.0951591813808927 (change=49.29808744783947 %)
[2025-11-27 00:03:01] 2025-11-26 23:02:06,397 | INFO     | sum of square deviations: 32814055252.0
[2025-11-27 00:03:01] 2025-11-26 23:02:06,399 | INFO     | sum of deviations: 91679581621.00003
[2025-11-27 00:03:01] 2025-11-26 23:02:06,399 | INFO     | mean x: 1764183706.0
[2025-11-27 00:03:01] 2025-11-26 23:02:06,399 | INFO     | mean y: 2214385.6553911204
[2025-11-27 00:03:01] 2025-11-26 23:02:06,399 | INFO     | intersect: -4926759580.730778
[2025-11-27 00:03:01] 2025-11-26 23:02:06,399 | INFO     | chi2: 1.8423234990942774
[2025-11-27 00:03:01] 2025-11-26 23:02:06,399 | INFO     | current chi2=1.8423234990942774 (change=12.06761207136417 %)
[2025-11-27 00:03:01] 2025-11-26 23:02:06,399 | INFO     | left removable region: 20
[2025-11-27 00:03:01] 2025-11-26 23:02:06,399 | INFO     | sum of square deviations: 28634631773.0
[2025-11-27 00:03:01] 2025-11-26 23:02:06,401 | INFO     | sum of deviations: 142844774210.0
[2025-11-27 00:03:01] 2025-11-26 23:02:06,401 | INFO     | mean x: 1764183675.5
[2025-11-27 00:03:01] 2025-11-26 23:02:06,401 | INFO     | mean y: 2226502.353982301
[2025-11-27 00:03:01] 2025-11-26 23:02:06,401 | INFO     | intersect: -8798460050.541868
[2025-11-27 00:03:01] 2025-11-26 23:02:06,401 | INFO     | chi2: 0.07718093102384724
[2025-11-27 00:03:01] 2025-11-26 23:02:06,401 | INFO     | current memory leak: 4.99 B/s (using 452 data points, chi2=0.08)
[2025-11-27 00:03:01] 2025-11-26 23:02:06,401 | INFO     | could have reported an average CPU frequency of 4019 MHz (20 samples)
[2025-11-27 00:03:01] 2025-11-26 23:02:06,401 | INFO     | ..............................
[2025-11-27 00:03:01] 2025-11-26 23:02:06,401 | INFO     | . Timing measurements:
[2025-11-27 00:03:01] 2025-11-26 23:02:06,401 | INFO     | . get job = 0 s
[2025-11-27 00:03:01] 2025-11-26 23:02:06,401 | INFO     | . initial setup = 1 s
[2025-11-27 00:03:01] 2025-11-26 23:02:06,401 | INFO     | . payload setup = 3 s
[2025-11-27 00:03:01] 2025-11-26 23:02:06,402 | INFO     | . stage-in = 0 s
[2025-11-27 00:03:01] 2025-11-26 23:02:06,402 | INFO     | . payload execution = 29418 s
[2025-11-27 00:03:01] 2025-11-26 23:02:06,402 | INFO     | . stage-out = 0 s
[2025-11-27 00:03:01] 2025-11-26 23:02:06,402 | INFO     | . log creation = 0 s
[2025-11-27 00:03:01] 2025-11-26 23:02:06,402 | INFO     | ..............................
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | 
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | job summary report
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | --------------------------------------------------
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | PanDA job id: 6895351255
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | task id: 47556137
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | errors: (none)
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | pilot state: finished 
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | transexitcode: 0
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | exeerrorcode: 0
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | exeerrordiag: 
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | exitcode: 0
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | exitmsg: OK
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | cpuconsumptiontime: 87002 s
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | nevents: 1000
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | neventsw: 0
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | pid: 2982819
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | pgrp: 2982819
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | corecount: 3
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | event service: False
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | sizes: {0: 2284216, 3: 2284478, 11: 2284506, 29424: 2323665, 29425: 2323664, 29427: 2332720, 29428: 2332904, 29433: 2333150}
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | --------------------------------------------------
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | 
[2025-11-27 00:03:01] 2025-11-26 23:02:06,432 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-27 00:03:01] 2025-11-26 23:02:06,445 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:03:01] 2025-11-26 23:02:06,445 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:03:01] 2025-11-26 23:02:06,445 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:03:01] 2025-11-26 23:02:06,445 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:03:01] 2025-11-26 23:02:06,445 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:03:01] 2025-11-26 23:02:06,445 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:03:01] 2025-11-26 23:02:06,445 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:03:01] 2025-11-26 23:02:06,445 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:03:01] 2025-11-26 23:02:06,445 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:03:01] 2025-11-26 23:02:06,445 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:03:01] 2025-11-26 23:02:06,446 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:03:01] 2025-11-26 23:02:06,446 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:03:01] 2025-11-26 23:02:06,446 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:03:01] 2025-11-26 23:02:06,446 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:03:01] 2025-11-26 23:02:06,446 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:03:01] 2025-11-26 23:02:06,446 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:03:01] 2025-11-26 23:02:06,446 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:03:01] 2025-11-26 23:02:06,446 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:03:01] 2025-11-26 23:02:06,446 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:03:01] 2025-11-26 23:02:06,446 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:03:01] 2025-11-26 23:02:06,446 | INFO     | job 6895351255 has completed (purged errors)
[2025-11-27 00:03:01] 2025-11-26 23:02:06,446 | INFO     | overall cleanup function is called
[2025-11-27 00:03:01] 2025-11-26 23:02:07,454 | INFO     | --- collectZombieJob: --- 10, [2982819]
[2025-11-27 00:03:01] 2025-11-26 23:02:07,455 | INFO     | zombie collector waiting for pid 2982819
[2025-11-27 00:03:01] 2025-11-26 23:02:07,455 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:03:01] 2025-11-26 23:02:07,455 | INFO     | collected zombie processes
[2025-11-27 00:03:01] 2025-11-26 23:02:07,455 | INFO     | will attempt to kill all subprocesses of pid=2982819
[2025-11-27 00:03:01] 2025-11-26 23:02:07,507 | INFO     | process IDs to be killed: [2982819] (in reverse order)
[2025-11-27 00:03:01] 2025-11-26 23:02:07,535 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:03:01] 2025-11-26 23:02:07,535 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:03:01] 2025-11-26 23:02:07,536 | INFO     | did not find any defunct processes belonging to 2982819
[2025-11-27 00:03:01] 2025-11-26 23:02:07,538 | INFO     | did not find any defunct processes belonging to 2982819
[2025-11-27 00:03:01] 2025-11-26 23:02:07,538 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:03:01] 2025-11-26 23:02:07,538 | INFO     | ready for new job
[2025-11-27 00:03:01] 2025-11-26 23:02:07,538 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:03:01] 2025-11-26 23:02:07,540 | INFO     | ***************************************
[2025-11-27 00:03:01] 2025-11-26 23:02:07,540 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:03:01] 2025-11-26 23:02:07,540 | INFO     | ***************************************
[2025-11-27 00:03:01] 2025-11-26 23:02:07,540 | INFO     | 
[2025-11-27 00:03:01] 2025-11-26 23:02:07,540 | INFO     | architecture information:
[2025-11-27 00:03:01] 2025-11-26 23:02:07,540 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:03:01] 2025-11-26 23:02:07,549 | INFO     | cat /etc/os-release:
[2025-11-27 00:03:01] NAME="CentOS Linux"
[2025-11-27 00:03:01] VERSION="7 (Core)"
[2025-11-27 00:03:01] ID="centos"
[2025-11-27 00:03:01] ID_LIKE="rhel fedora"
[2025-11-27 00:03:01] VERSION_ID="7"
[2025-11-27 00:03:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:03:01] ANSI_COLOR="0;31"
[2025-11-27 00:03:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:03:01] HOME_URL="https://www.centos.org/"
[2025-11-27 00:03:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:03:01] 
[2025-11-27 00:03:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:03:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:03:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:03:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:03:01] 
[2025-11-27 00:03:01] 2025-11-26 23:02:07,549 | INFO     | ***************************************
[2025-11-27 00:03:01] 2025-11-26 23:02:08,052 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 00:03:01] 2025-11-26 23:02:08,061 | INFO     | sufficient remaining disk space (322791538688 B)
[2025-11-27 00:03:01] 2025-11-26 23:02:08,062 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:03:01] 2025-11-26 23:02:08,062 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:03:01] 2025-11-26 23:02:08,062 | INFO     | update_server=False
[2025-11-27 00:03:01] 2025-11-26 23:02:08,062 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:03:01] 2025-11-26 23:02:08,062 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:03:01] 2025-11-26 23:02:08,062 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:03:01] 2025-11-26 23:02:08,062 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:03:01] 2025-11-26 23:02:08,062 | INFO     | aborting loop
[2025-11-27 00:03:01] 2025-11-26 23:02:08,350 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:03:01] 2025-11-26 23:02:08,639 | INFO     | all data control threads have been joined
[2025-11-27 00:03:01] 2025-11-26 23:02:09,067 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:03:01] 2025-11-26 23:02:09,068 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:03:01] 2025-11-26 23:02:09,068 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:03:01] 2025-11-26 23:02:09,084 | INFO     | all payload control threads have been joined
[2025-11-27 00:03:01] 2025-11-26 23:02:09,249 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:03:01] 2025-11-26 23:02:09,608 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:03:01] 2025-11-26 23:02:09,644 | INFO     | [data] control thread has finished
[2025-11-27 00:03:01] 2025-11-26 23:02:09,649 | INFO     | all job control threads have been joined
[2025-11-27 00:03:01] 2025-11-26 23:02:09,769 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:03:01] 2025-11-26 23:02:10,089 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:03:01] 2025-11-26 23:02:10,089 | INFO     | [payload] control thread has finished
[2025-11-27 00:03:01] 2025-11-26 23:02:10,139 | INFO     | [job] validate thread has finished
[2025-11-27 00:03:01] 2025-11-26 23:02:10,229 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:03:01] 2025-11-26 23:02:10,355 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:03:01] 2025-11-26 23:02:10,365 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:03:01] 2025-11-26 23:02:10,455 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:03:01] 2025-11-26 23:02:10,654 | INFO     | [job] control thread has finished
[2025-11-27 00:03:01] 2025-11-26 23:02:12,068 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:03:01] 2025-11-26 23:02:38,306 | INFO     | PID=2976373 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 00:03:01] 2025-11-26 23:02:38,307 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:03:01] 2025-11-26 23:02:38,307 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:03:01] 2025-11-26 23:02:38,307 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:03:01] 2025-11-26 23:02:54,667 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:03:01] 2025-11-26 23:02:55,955 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139791802652480)>', '<ExcThread(monitor, started 139791161083648)>']
[2025-11-27 00:03:01] 2025-11-26 23:02:56,397 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:03:01] 2025-11-26 23:02:56,397 | INFO     | [monitor] control thread has ended
[2025-11-27 00:03:01] 2025-11-26 23:03:00,974 | INFO     | all workflow threads have been joined
[2025-11-27 00:03:01] 2025-11-26 23:03:00,974 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:03:01] 2025-11-26 23:03:00,974 | INFO     | traces error code: 0
[2025-11-27 00:03:01] 2025-11-26 23:03:00,974 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:03:01] 2025-11-26 23:03:01,022 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:03:01] 2025-11-26 23:03:01,025 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:03:01] 2025-11-26 23:03:01,027 [wrapper] pilotpid: 2976373
[2025-11-27 00:03:01] 2025-11-26 23:03:01,029 [wrapper] Pilot exit status: 0
[2025-11-27 00:03:01] 2025-11-26 23:03:01,036 [wrapper] pandaids: 6895351255
[2025-11-27 00:03:01] 2025-11-26 23:03:01,056 [wrapper] cleanup supervisor_pilot 3036272 2976374
[2025-11-27 00:03:01] 2025-11-26 23:03:01,058 [wrapper] Test setup, not cleaning
[2025-11-27 00:03:01] 2025-11-26 23:03:01,060 [wrapper] apfmon messages muted
[2025-11-27 00:03:01] 2025-11-26 23:03:01,063 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:03:01] 2025-11-26 23:03:01,065 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:03:01]  *** Error codes and diagnostics ***
[2025-11-27 00:03:01]     "exeErrorCode": 0,
[2025-11-27 00:03:01]     "exeErrorDiag": "",
[2025-11-27 00:03:01]     "pilotErrorCode": 0,
[2025-11-27 00:03:01]     "pilotErrorDiag": "",
[2025-11-27 00:03:01]  *** Listing of results directory ***
[2025-11-27 00:03:01] total 1303260
[2025-11-27 00:03:01] -rw-r--r-- 1 boinc boinc    598293 Nov  6 09:41 pilot3.tar.gz
[2025-11-27 00:03:01] -rwx------ 1 boinc boinc     36292 Nov 23 01:10 runpilot2-wrapper.sh
[2025-11-27 00:03:01] -rw-r--r-- 1 boinc boinc      5112 Nov 23 01:10 queuedata.json
[2025-11-27 00:03:01] -rw-r--r-- 1 boinc boinc       100 Nov 26 15:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:03:01] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 15:51 run_atlas
[2025-11-27 00:03:01] -rw-r--r-- 1 boinc boinc       105 Nov 26 15:51 job.xml
[2025-11-27 00:03:01] -rw-r--r-- 2 boinc boinc 408086083 Nov 26 15:51 EVNT.47483658._000544.pool.root.1
[2025-11-27 00:03:01] -rw-r--r-- 2 boinc boinc    611273 Nov 26 15:51 input.tar.gz
[2025-11-27 00:03:01] -rw-r--r-- 2 boinc boinc     15847 Nov 26 15:51 start_atlas.sh
[2025-11-27 00:03:01] drwxrwx--x 2 boinc boinc      4096 Nov 26 15:51 shared
[2025-11-27 00:03:01] -rw-r--r-- 1 boinc boinc         0 Nov 26 15:51 boinc_setup_complete
[2025-11-27 00:03:01] -rw-r--r-- 1 boinc boinc      6439 Nov 26 15:51 init_data.xml
[2025-11-27 00:03:01] -rw-r--r-- 1 boinc boinc         0 Nov 26 15:51 boinc_lockfile
[2025-11-27 00:03:01] -rw-r--r-- 1 boinc boinc      2784 Nov 26 15:51 pandaJob.out
[2025-11-27 00:03:01] -rw------- 1 boinc boinc    992360 Nov 26 15:51 agis_schedconf.cvmfs.json
[2025-11-27 00:03:01] drwx------ 7 boinc boinc      4096 Nov 26 15:51 pilot3
[2025-11-27 00:03:01] -rw-r--r-- 1 boinc boinc       532 Nov 26 23:58 boinc_task_state.xml
[2025-11-27 00:03:01] -rw------- 1 boinc boinc 911856364 Nov 27 00:01 HITS.47556137._005393.pool.root.1
[2025-11-27 00:03:01] -rw------- 1 boinc boinc      1032 Nov 27 00:01 memory_monitor_summary.json
[2025-11-27 00:03:01] -rw------- 1 boinc boinc   1516240 Nov 27 00:01 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:03:01] -rw------- 1 boinc boinc   1170470 Nov 27 00:02 log.47556137._005393.job.log.tgz.1
[2025-11-27 00:03:01] -rw------- 1 boinc boinc        95 Nov 27 00:02 pilot_heartbeat.json
[2025-11-27 00:03:01] -rw------- 1 boinc boinc      8575 Nov 27 00:02 heartbeat.json
[2025-11-27 00:03:01] -rw-r--r-- 1 boinc boinc      8192 Nov 27 00:02 boinc_mmap_file
[2025-11-27 00:03:01] -rw-r--r-- 1 boinc boinc        28 Nov 27 00:02 wrapper_checkpoint.txt
[2025-11-27 00:03:01] -rw------- 1 boinc boinc      4752 Nov 27 00:03 pilotlog.txt
[2025-11-27 00:03:01] -rw------- 1 boinc boinc   4145578 Nov 27 00:03 log.47556137._005393.job.log.1
[2025-11-27 00:03:01] -rw------- 1 boinc boinc       353 Nov 27 00:03 output.list
[2025-11-27 00:03:01] -rw-r--r-- 1 boinc boinc       620 Nov 27 00:03 runtime_log
[2025-11-27 00:03:01] -rw------- 1 boinc boinc   5335040 Nov 27 00:03 result.tar.gz
[2025-11-27 00:03:01] -rw-r--r-- 1 boinc boinc      8903 Nov 27 00:03 runtime_log.err
[2025-11-27 00:03:01] -rw------- 1 boinc boinc       666 Nov 27 00:03 GZ7KDmMrCh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1SKKDmz7QM7m.diag
[2025-11-27 00:03:01] -rw-r--r-- 1 boinc boinc     21407 Nov 27 00:03 stderr.txt
[2025-11-27 00:03:01] HITS file was successfully produced:
[2025-11-27 00:03:01] -rw------- 1 boinc boinc 911856364 Nov 27 00:01 shared/HITS.pool.root.1
[2025-11-27 00:03:01]  *** Contents of shared directory: ***
[2025-11-27 00:03:01] total 1294844
[2025-11-27 00:03:01] -rw-r--r-- 2 boinc boinc 408086083 Nov 26 15:51 ATLAS.root_0
[2025-11-27 00:03:01] -rw-r--r-- 2 boinc boinc    611273 Nov 26 15:51 input.tar.gz
[2025-11-27 00:03:01] -rw-r--r-- 2 boinc boinc     15847 Nov 26 15:51 start_atlas.sh
[2025-11-27 00:03:01] -rw------- 1 boinc boinc 911856364 Nov 27 00:01 HITS.pool.root.1
[2025-11-27 00:03:01] -rw------- 1 boinc boinc   5335040 Nov 27 00:03 result.tar.gz
00:03:02 (2972652): run_atlas exited; CPU time 87065.968715
00:03:02 (2972652): called boinc_finish(0)

</stderr_txt>
]]>

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