Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:32:53 (3366295): wrapper (7.7.26015): starting
11:32:53 (3366295): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 11:32:53] Arguments: --nthreads 9
[2025-11-24 11:32:53] Threads: 9
[2025-11-24 11:32:53] Checking for CVMFS
[2025-11-24 11:32:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 11:32:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 11:32:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 11:32:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 11:32:56] 2.13.3.0 11250 27414 344212 153252 3 350 18450429 32935936 14642 16776704 0 90695271 99.485 119362150 39421 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 11:32:56] CVMFS is ok
[2025-11-24 11:32:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 11:32:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 11:32:56] Further information can be found at the LHC@home message board.
[2025-11-24 11:32:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 11:32:56] Checking for apptainer binary...
[2025-11-24 11:32:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 11:32:56] Running /usr/bin/apptainer --version
[2025-11-24 11:32:56] apptainer version 1.4.4-1.el9
[2025-11-24 11:32:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 11:32:56] c6-2-29-1.aglt2.org
[2025-11-24 11:32:56] apptainer works
[2025-11-24 11:32:57] Set ATHENA_PROC_NUMBER=9
[2025-11-24 11:32:57] Set ATHENA_CORE_NUMBER=9
[2025-11-24 11:32:57] Starting ATLAS job with PandaID=6895356904
[2025-11-24 11:32:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:00:09 (3366295): BOINC client no longer exists - exiting
13:00:09 (3366295): timer handler: client dead, exiting
13:12:33 (3615104): wrapper (7.7.26015): starting
13:12:33 (3615104): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 13:12:33] Arguments: --nthreads 8
[2025-11-24 13:12:33] Threads: 8
[2025-11-24 13:12:33] This job has been restarted, cleaning up previous attempt
[2025-11-24 13:12:33] Checking for CVMFS
[2025-11-24 13:12:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 13:12:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 13:12:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 13:12:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 13:12:34] 2.13.3.0 11250 27514 336996 153254 0 369 22908012 32935937 12568 16776704 0 90881875 99.485 119647270 39412 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 13:12:34] CVMFS is ok
[2025-11-24 13:12:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 13:12:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 13:12:34] Further information can be found at the LHC@home message board.
[2025-11-24 13:12:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 13:12:34] Checking for apptainer binary...
[2025-11-24 13:12:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 13:12:34] Running /usr/bin/apptainer --version
[2025-11-24 13:12:34] apptainer version 1.4.4-1.el9
[2025-11-24 13:12:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 13:12:34] c6-2-29-1.aglt2.org
[2025-11-24 13:12:34] apptainer works
[2025-11-24 13:12:34] Set ATHENA_PROC_NUMBER=8
[2025-11-24 13:12:34] Set ATHENA_CORE_NUMBER=8
[2025-11-24 13:12:34] Starting ATLAS job with PandaID=6895356904
[2025-11-24 13:12:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 13:58:39]  *** The last 200 lines of the pilot log: ***
[2025-11-25 13:58:39] 2025-11-25 18:57:46,259 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 13:58:39] 2025-11-25 18:57:46,738 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 13:58:39] 2025-11-25 18:57:46,742 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2835.379196428571
[2025-11-25 13:58:39] 2025-11-25 18:57:46,753 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895356904/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 13:58:39] 2025-11-25 18:57:46,753 | INFO     | extracted standard info from prmon json
[2025-11-25 13:58:39] 2025-11-25 18:57:46,754 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 13:58:39] 2025-11-25 18:57:46,754 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 13:58:39] 2025-11-25 18:57:46,778 | INFO     | fitting pss+swap vs Time
[2025-11-25 13:58:39] 2025-11-25 18:57:46,780 | INFO     | sum of square deviations: 965091898626.451
[2025-11-25 13:58:39] 2025-11-25 18:57:46,816 | INFO     | sum of deviations: 4260229948438.8237
[2025-11-25 13:58:39] 2025-11-25 18:57:46,817 | INFO     | mean x: 1764052504.158219
[2025-11-25 13:58:39] 2025-11-25 18:57:46,817 | INFO     | mean y: 2948539.0657534245
[2025-11-25 13:58:39] 2025-11-25 18:57:46,817 | INFO     | intersect: -7784153725.008077
[2025-11-25 13:58:39] 2025-11-25 18:57:46,819 | INFO     | chi2: 5.075904046863632
[2025-11-25 13:58:39] 2025-11-25 18:57:46,821 | INFO     | sum of square deviations: 955214532028.5696
[2025-11-25 13:58:39] 2025-11-25 18:57:46,857 | INFO     | sum of deviations: 4688460330926.979
[2025-11-25 13:58:39] 2025-11-25 18:57:46,857 | INFO     | mean x: 1764052351.6838489
[2025-11-25 13:58:39] 2025-11-25 18:57:46,857 | INFO     | mean y: 2955148.080412371
[2025-11-25 13:58:39] 2025-11-25 18:57:46,857 | INFO     | intersect: -8655507631.98626
[2025-11-25 13:58:39] 2025-11-25 18:57:46,859 | INFO     | chi2: 2.7042525447490133
[2025-11-25 13:58:39] 2025-11-25 18:57:46,859 | INFO     | current chi2=2.7042525447490133 (change=46.72372606373531 %)
[2025-11-25 13:58:39] 2025-11-25 18:57:46,861 | INFO     | sum of square deviations: 945403510543.4019
[2025-11-25 13:58:39] 2025-11-25 18:57:46,896 | INFO     | sum of deviations: 4745655428887.531
[2025-11-25 13:58:39] 2025-11-25 18:57:46,896 | INFO     | mean x: 1764052199.1993103
[2025-11-25 13:58:39] 2025-11-25 18:57:46,896 | INFO     | mean y: 2956034.1296551726
[2025-11-25 13:58:39] 2025-11-25 18:57:46,896 | INFO     | intersect: -8852081843.992197
[2025-11-25 13:58:39] 2025-11-25 18:57:46,898 | INFO     | chi2: 2.4847764065167706
[2025-11-25 13:58:39] 2025-11-25 18:57:46,898 | INFO     | current chi2=2.4847764065167706 (change=8.115963084084395 %)
[2025-11-25 13:58:39] 2025-11-25 18:57:46,898 | INFO     | right removable region: 1449
[2025-11-25 13:58:39] 2025-11-25 18:57:46,899 | INFO     | sum of square deviations: 955208511525.1105
[2025-11-25 13:58:39] 2025-11-25 18:57:46,934 | INFO     | sum of deviations: 3890420257708.5684
[2025-11-25 13:58:39] 2025-11-25 18:57:46,934 | INFO     | mean x: 1764052656.6790378
[2025-11-25 13:58:39] 2025-11-25 18:57:46,934 | INFO     | mean y: 2954239.8941580756
[2025-11-25 13:58:39] 2025-11-25 18:57:46,934 | INFO     | intersect: -7181766277.567787
[2025-11-25 13:58:39] 2025-11-25 18:57:46,936 | INFO     | chi2: 3.0846781854117817
[2025-11-25 13:58:39] 2025-11-25 18:57:46,936 | INFO     | current chi2=3.0846781854117817 (change=39.228989418785716 %)
[2025-11-25 13:58:39] 2025-11-25 18:57:46,938 | INFO     | sum of square deviations: 945392713070.5989
[2025-11-25 13:58:39] 2025-11-25 18:57:46,972 | INFO     | sum of deviations: 3744322219464.334
[2025-11-25 13:58:39] 2025-11-25 18:57:46,972 | INFO     | mean x: 1764052809.2006896
[2025-11-25 13:58:39] 2025-11-25 18:57:46,972 | INFO     | mean y: 2956509.8648275863
[2025-11-25 13:58:39] 2025-11-25 18:57:46,972 | INFO     | intersect: -6983750747.847413
[2025-11-25 13:58:39] 2025-11-25 18:57:46,974 | INFO     | chi2: 2.9410871676310295
[2025-11-25 13:58:39] 2025-11-25 18:57:46,974 | INFO     | current chi2=2.9410871676310295 (change=4.654975629543148 %)
[2025-11-25 13:58:39] 2025-11-25 18:57:46,974 | INFO     | left removable region: 20
[2025-11-25 13:58:39] 2025-11-25 18:57:46,975 | INFO     | sum of square deviations: 904913402467.7915
[2025-11-25 13:58:39] 2025-11-25 18:57:47,009 | INFO     | sum of deviations: 4010343653928.9624
[2025-11-25 13:58:39] 2025-11-25 18:57:47,009 | INFO     | mean x: 1764052778.7690692
[2025-11-25 13:58:39] 2025-11-25 18:57:47,009 | INFO     | mean y: 2967398.1483554933
[2025-11-25 13:58:39] 2025-11-25 18:57:47,010 | INFO     | intersect: -7814861188.80761
[2025-11-25 13:58:39] 2025-11-25 18:57:47,011 | INFO     | chi2: 0.23284870075479644
[2025-11-25 13:58:39] 2025-11-25 18:57:47,011 | INFO     | current memory leak: 4.43 B/s (using 1429 data points, chi2=0.23)
[2025-11-25 13:58:39] 2025-11-25 18:57:47,013 | INFO     | could have reported an average CPU frequency of 2769 MHz (52 samples)
[2025-11-25 13:58:39] 2025-11-25 18:57:47,013 | INFO     | ..............................
[2025-11-25 13:58:39] 2025-11-25 18:57:47,013 | INFO     | . Timing measurements:
[2025-11-25 13:58:39] 2025-11-25 18:57:47,013 | INFO     | . get job = 0 s
[2025-11-25 13:58:39] 2025-11-25 18:57:47,013 | INFO     | . initial setup = 1 s
[2025-11-25 13:58:39] 2025-11-25 18:57:47,014 | INFO     | . payload setup = 7 s
[2025-11-25 13:58:39] 2025-11-25 18:57:47,014 | INFO     | . stage-in = 0 s
[2025-11-25 13:58:39] 2025-11-25 18:57:47,014 | INFO     | . payload execution = 89063 s
[2025-11-25 13:58:39] 2025-11-25 18:57:47,014 | INFO     | . stage-out = 3 s
[2025-11-25 13:58:39] 2025-11-25 18:57:47,014 | INFO     | . log creation = 0 s
[2025-11-25 13:58:39] 2025-11-25 18:57:47,014 | INFO     | ..............................
[2025-11-25 13:58:39] 2025-11-25 18:57:47,105 | INFO     | 
[2025-11-25 13:58:39] 2025-11-25 18:57:47,105 | INFO     | job summary report
[2025-11-25 13:58:39] 2025-11-25 18:57:47,105 | INFO     | --------------------------------------------------
[2025-11-25 13:58:39] 2025-11-25 18:57:47,105 | INFO     | PanDA job id: 6895356904
[2025-11-25 13:58:39] 2025-11-25 18:57:47,105 | INFO     | task id: 47556137
[2025-11-25 13:58:39] 2025-11-25 18:57:47,105 | INFO     | errors: (none)
[2025-11-25 13:58:39] 2025-11-25 18:57:47,106 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 13:58:39] 2025-11-25 18:57:47,106 | INFO     | pilot state: finished 
[2025-11-25 13:58:39] 2025-11-25 18:57:47,106 | INFO     | transexitcode: 0
[2025-11-25 13:58:39] 2025-11-25 18:57:47,106 | INFO     | exeerrorcode: 0
[2025-11-25 13:58:39] 2025-11-25 18:57:47,106 | INFO     | exeerrordiag: 
[2025-11-25 13:58:39] 2025-11-25 18:57:47,106 | INFO     | exitcode: 0
[2025-11-25 13:58:39] 2025-11-25 18:57:47,106 | INFO     | exitmsg: OK
[2025-11-25 13:58:39] 2025-11-25 18:57:47,106 | INFO     | cpuconsumptiontime: 245345 s
[2025-11-25 13:58:39] 2025-11-25 18:57:47,106 | INFO     | nevents: 1000
[2025-11-25 13:58:39] 2025-11-25 18:57:47,106 | INFO     | neventsw: 0
[2025-11-25 13:58:39] 2025-11-25 18:57:47,106 | INFO     | pid: 3644903
[2025-11-25 13:58:39] 2025-11-25 18:57:47,106 | INFO     | pgrp: 3644903
[2025-11-25 13:58:39] 2025-11-25 18:57:47,106 | INFO     | corecount: 8
[2025-11-25 13:58:39] 2025-11-25 18:57:47,106 | INFO     | event service: False
[2025-11-25 13:58:39] 2025-11-25 18:57:47,106 | INFO     | sizes: {0: 2284139, 1: 2284338, 6: 2284600, 11: 2284628, 89074: 2350522, 89078: 2359705, 89084: 2359895}
[2025-11-25 13:58:39] 2025-11-25 18:57:47,107 | INFO     | --------------------------------------------------
[2025-11-25 13:58:39] 2025-11-25 18:57:47,107 | INFO     | 
[2025-11-25 13:58:39] 2025-11-25 18:57:47,107 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 13:58:39] 2025-11-25 18:57:47,125 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 13:58:39] 2025-11-25 18:57:47,125 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 13:58:39] 2025-11-25 18:57:47,126 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 13:58:39] 2025-11-25 18:57:47,126 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 13:58:39] 2025-11-25 18:57:47,126 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 13:58:39] 2025-11-25 18:57:47,126 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 13:58:39] 2025-11-25 18:57:47,126 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 13:58:39] 2025-11-25 18:57:47,126 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 13:58:39] 2025-11-25 18:57:47,126 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 13:58:39] 2025-11-25 18:57:47,126 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 13:58:39] 2025-11-25 18:57:47,126 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 13:58:39] 2025-11-25 18:57:47,126 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 13:58:39] 2025-11-25 18:57:47,126 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 13:58:39] 2025-11-25 18:57:47,126 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 13:58:39] 2025-11-25 18:57:47,126 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 13:58:39] 2025-11-25 18:57:47,126 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 13:58:39] 2025-11-25 18:57:47,126 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 13:58:39] 2025-11-25 18:57:47,126 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 13:58:39] 2025-11-25 18:57:47,127 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 13:58:39] 2025-11-25 18:57:47,127 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 13:58:39] 2025-11-25 18:57:47,127 | INFO     | job 6895356904 has completed (purged errors)
[2025-11-25 13:58:39] 2025-11-25 18:57:47,127 | INFO     | overall cleanup function is called
[2025-11-25 13:58:39] 2025-11-25 18:57:48,144 | INFO     | --- collectZombieJob: --- 10, [3644903]
[2025-11-25 13:58:39] 2025-11-25 18:57:48,144 | INFO     | zombie collector waiting for pid 3644903
[2025-11-25 13:58:39] 2025-11-25 18:57:48,144 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 13:58:39] 2025-11-25 18:57:48,144 | INFO     | collected zombie processes
[2025-11-25 13:58:39] 2025-11-25 18:57:48,144 | INFO     | will attempt to kill all subprocesses of pid=3644903
[2025-11-25 13:58:39] 2025-11-25 18:57:48,660 | INFO     | process IDs to be killed: [3644903] (in reverse order)
[2025-11-25 13:58:39] 2025-11-25 18:57:48,775 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 13:58:39] 2025-11-25 18:57:48,776 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 13:58:39] 2025-11-25 18:57:48,789 | INFO     | did not find any defunct processes belonging to 3644903
[2025-11-25 13:58:39] 2025-11-25 18:57:48,802 | INFO     | did not find any defunct processes belonging to 3644903
[2025-11-25 13:58:39] 2025-11-25 18:57:48,804 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 13:58:39] 2025-11-25 18:57:48,804 | INFO     | ready for new job
[2025-11-25 13:58:39] 2025-11-25 18:57:48,804 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 13:58:39] 2025-11-25 18:57:48,811 | INFO     | ***************************************
[2025-11-25 13:58:39] 2025-11-25 18:57:48,811 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 13:58:39] 2025-11-25 18:57:48,811 | INFO     | ***************************************
[2025-11-25 13:58:39] 2025-11-25 18:57:48,811 | INFO     | 
[2025-11-25 13:58:39] 2025-11-25 18:57:48,814 | INFO     | architecture information:
[2025-11-25 13:58:39] 2025-11-25 18:57:48,815 | INFO     | executing command: cat /etc/os-release
[2025-11-25 13:58:39] 2025-11-25 18:57:48,834 | INFO     | cat /etc/os-release:
[2025-11-25 13:58:39] NAME="CentOS Linux"
[2025-11-25 13:58:39] VERSION="7 (Core)"
[2025-11-25 13:58:39] ID="centos"
[2025-11-25 13:58:39] ID_LIKE="rhel fedora"
[2025-11-25 13:58:39] VERSION_ID="7"
[2025-11-25 13:58:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 13:58:39] ANSI_COLOR="0;31"
[2025-11-25 13:58:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 13:58:39] HOME_URL="https://www.centos.org/"
[2025-11-25 13:58:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 13:58:39] 
[2025-11-25 13:58:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 13:58:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 13:58:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 13:58:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 13:58:39] 
[2025-11-25 13:58:39] 2025-11-25 18:57:48,834 | INFO     | ***************************************
[2025-11-25 13:58:39] 2025-11-25 18:57:49,338 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 13:58:39] 2025-11-25 18:57:49,354 | INFO     | sufficient remaining disk space (71274856448 B)
[2025-11-25 13:58:39] 2025-11-25 18:57:49,355 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 13:58:39] 2025-11-25 18:57:49,355 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 13:58:39] 2025-11-25 18:57:49,355 | INFO     | update_server=False
[2025-11-25 13:58:39] 2025-11-25 18:57:49,355 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 13:58:39] 2025-11-25 18:57:49,355 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 13:58:39] 2025-11-25 18:57:49,526 | INFO     | all data control threads have been joined
[2025-11-25 13:58:39] 2025-11-25 18:57:49,732 | INFO     | all payload control threads have been joined
[2025-11-25 13:58:39] 2025-11-25 18:57:49,774 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:58:39] 2025-11-25 18:57:49,774 | INFO     | aborting loop
[2025-11-25 13:58:39] 2025-11-25 18:57:50,361 | INFO     | [job] retrieve thread has finished
[2025-11-25 13:58:39] 2025-11-25 18:57:50,532 | INFO     | [data] control thread has finished
[2025-11-25 13:58:39] 2025-11-25 18:57:50,588 | INFO     | [job] validate thread has finished
[2025-11-25 13:58:39] 2025-11-25 18:57:50,653 | INFO     | all job control threads have been joined
[2025-11-25 13:58:39] 2025-11-25 18:57:50,738 | INFO     | [payload] control thread has finished
[2025-11-25 13:58:39] 2025-11-25 18:57:50,780 | INFO     | [job] job monitor thread has finished
[2025-11-25 13:58:39] 2025-11-25 18:57:50,876 | INFO     | [payload] validate_post thread has finished
[2025-11-25 13:58:39] 2025-11-25 18:57:50,913 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 13:58:39] 2025-11-25 18:57:51,286 | INFO     | [payload] failed_post thread has finished
[2025-11-25 13:58:39] 2025-11-25 18:57:51,362 | INFO     | [data] copytool_out thread has finished
[2025-11-25 13:58:39] 2025-11-25 18:57:51,491 | INFO     | [data] copytool_in thread has finished
[2025-11-25 13:58:39] 2025-11-25 18:57:51,584 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 13:58:39] 2025-11-25 18:57:51,646 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 13:58:39] 2025-11-25 18:57:51,659 | INFO     | [job] control thread has finished
[2025-11-25 13:58:39] 2025-11-25 18:57:52,056 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 13:58:39] 2025-11-25 18:57:52,120 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 13:58:39] 2025-11-25 18:57:53,126 | INFO     | [job] queue monitor thread has finished
[2025-11-25 13:58:39] 2025-11-25 18:57:56,065 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 13:58:39] 2025-11-25 18:57:59,569 | INFO     | job.realtimelogging is not enabled
[2025-11-25 13:58:39] 2025-11-25 18:58:00,576 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 13:58:39] 2025-11-25 18:58:00,765 [wrapper] supervise_pilot (15 min periods counter: 100)
[2025-11-25 13:58:39] 2025-11-25 18:58:19,497 | INFO     | PID=3626154 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 13:58:39] 2025-11-25 18:58:19,498 | INFO     | .. there are 18 such processes running
[2025-11-25 13:58:39] 2025-11-25 18:58:19,499 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 13:58:39] 2025-11-25 18:58:19,499 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 13:58:39] 2025-11-25 18:58:19,499 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 13:58:39] 2025-11-25 18:58:31,831 | INFO     | [monitor] cgroup control has ended
[2025-11-25 13:58:39] 2025-11-25 18:58:33,898 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140705531414336)>', '<ExcThread(monitor, started 140705049593600)>']
[2025-11-25 13:58:39] 2025-11-25 18:58:34,612 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 13:58:39] 2025-11-25 18:58:34,616 | INFO     | [monitor] control thread has ended
[2025-11-25 13:58:39] 2025-11-25 18:58:38,928 | INFO     | all workflow threads have been joined
[2025-11-25 13:58:39] 2025-11-25 18:58:38,930 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 13:58:39] 2025-11-25 18:58:38,930 | INFO     | traces error code: 0
[2025-11-25 13:58:39] 2025-11-25 18:58:38,930 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 13:58:39] 2025-11-25 18:58:39,134 [wrapper] ==== pilot stdout END ====
[2025-11-25 13:58:39] 2025-11-25 18:58:39,153 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 13:58:39] 2025-11-25 18:58:39,157 [wrapper] pilotpid: 3626154
[2025-11-25 13:58:39] 2025-11-25 18:58:39,161 [wrapper] Pilot exit status: 0
[2025-11-25 13:58:39] 2025-11-25 18:58:39,201 [wrapper] pandaids: 6895356904 6895356904
[2025-11-25 13:58:39] 2025-11-25 18:58:39,271 [wrapper] cleanup supervisor_pilot 2859011 3626155
[2025-11-25 13:58:39] 2025-11-25 18:58:39,275 [wrapper] Test setup, not cleaning
[2025-11-25 13:58:39] 2025-11-25 18:58:39,288 [wrapper] apfmon messages muted
[2025-11-25 13:58:39] 2025-11-25 18:58:39,298 [wrapper] ==== wrapper stdout END ====
[2025-11-25 13:58:39] 2025-11-25 18:58:39,301 [wrapper] ==== wrapper stderr END ====
[2025-11-25 13:58:39]  *** Error codes and diagnostics ***
[2025-11-25 13:58:39]     "exeErrorCode": 0,
[2025-11-25 13:58:39]     "exeErrorDiag": "",
[2025-11-25 13:58:39]     "pilotErrorCode": 0,
[2025-11-25 13:58:39]     "pilotErrorDiag": "",
[2025-11-25 13:58:39]  *** Listing of results directory ***
[2025-11-25 13:58:39] total 1727756
[2025-11-25 13:58:39] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 13:58:39] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 06:12 pilot3.tar.gz
[2025-11-25 13:58:39] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 06:30 queuedata.json
[2025-11-25 13:58:39] -rwx------. 1 boincer umatlas     36292 Nov 23 06:31 runpilot2-wrapper.sh
[2025-11-25 13:58:39] -rw-r--r--. 1 boincer umatlas       100 Nov 24 11:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 13:58:39] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 11:32 run_atlas
[2025-11-25 13:58:39] -rw-r--r--. 1 boincer umatlas       105 Nov 24 11:32 job.xml
[2025-11-25 13:58:39] -rw-r--r--. 3 boincer umatlas 408115466 Nov 24 11:32 EVNT.47483658._000708.pool.root.1
[2025-11-25 13:58:39] -rw-r--r--. 3 boincer umatlas 408115466 Nov 24 11:32 ATLAS.root_0
[2025-11-25 13:58:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 11:32 start_atlas.sh
[2025-11-25 13:58:39] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 11:32 shared
[2025-11-25 13:58:39] -rw-r--r--. 2 boincer umatlas    590105 Nov 24 11:32 input.tar.gz
[2025-11-25 13:58:39] -rw-r--r--. 1 boincer umatlas         0 Nov 24 11:32 boinc_lockfile
[2025-11-25 13:58:39] -rw-r--r--. 1 boincer umatlas      2786 Nov 24 13:12 pandaJob.out
[2025-11-25 13:58:39] -rw-------. 1 boincer umatlas        57 Nov 24 13:12 setup.sh.local
[2025-11-25 13:58:39] -rw-------. 1 boincer umatlas    991801 Nov 24 13:12 agis_schedconf.cvmfs.json
[2025-11-25 13:58:39] -rw-r--r--. 1 boincer umatlas       533 Nov 25 13:49 boinc_task_state.xml
[2025-11-25 13:58:39] -rw-r--r--. 1 boincer umatlas      6844 Nov 25 13:55 init_data.xml
[2025-11-25 13:58:39] -rw-------. 1 boincer umatlas 921599334 Nov 25 13:56 HITS.47556137._007035.pool.root.1
[2025-11-25 13:58:39] -rw-------. 1 boincer umatlas      1067 Nov 25 13:57 memory_monitor_summary.json
[2025-11-25 13:58:39] -rw-------. 1 boincer umatlas   1516240 Nov 25 13:57 agis_ddmendpoints.agis.ALL.json
[2025-11-25 13:58:39] -rw-------. 1 boincer umatlas   2471319 Nov 25 13:57 log.47556137._007035.job.log.tgz.1
[2025-11-25 13:58:39] -rw-------. 1 boincer umatlas      8635 Nov 25 13:57 heartbeat.json
[2025-11-25 13:58:39] -rw-------. 1 boincer umatlas        96 Nov 25 13:58 pilot_heartbeat.json
[2025-11-25 13:58:39] -rw-------. 1 boincer umatlas      4896 Nov 25 13:58 pilotlog.txt
[2025-11-25 13:58:39] -rw-------. 1 boincer umatlas  11257740 Nov 25 13:58 log.47556137._007035.job.log.1
[2025-11-25 13:58:39] -rw-------. 1 boincer umatlas       353 Nov 25 13:58 output.list
[2025-11-25 13:58:39] -rw-r--r--. 1 boincer umatlas       620 Nov 25 13:58 runtime_log
[2025-11-25 13:58:39] -rw-------. 1 boincer umatlas  13752320 Nov 25 13:58 result.tar.gz
[2025-11-25 13:58:39] -rw-r--r--. 1 boincer umatlas      9433 Nov 25 13:58 runtime_log.err
[2025-11-25 13:58:39] -rw-------. 1 boincer umatlas       790 Nov 25 13:58 dK4NDmwUNh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnqKKDmTLlDhn.diag
[2025-11-25 13:58:39] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 13:58 boinc_mmap_file
[2025-11-25 13:58:39] -rw-r--r--. 1 boincer umatlas        29 Nov 25 13:58 wrapper_checkpoint.txt
[2025-11-25 13:58:39] -rw-r--r--. 1 boincer umatlas     23566 Nov 25 13:58 stderr.txt
[2025-11-25 13:58:39] HITS file was successfully produced:
[2025-11-25 13:58:39] -rw-------. 1 boincer umatlas 921599334 Nov 25 13:56 shared/HITS.pool.root.1
[2025-11-25 13:58:39]  *** Contents of shared directory: ***
[2025-11-25 13:58:39] total 1312588
[2025-11-25 13:58:39] -rw-r--r--. 3 boincer umatlas 408115466 Nov 24 11:32 ATLAS.root_0
[2025-11-25 13:58:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 11:32 start_atlas.sh
[2025-11-25 13:58:39] -rw-r--r--. 2 boincer umatlas    590105 Nov 24 11:32 input.tar.gz
[2025-11-25 13:58:39] -rw-------. 1 boincer umatlas 921599334 Nov 25 13:56 HITS.pool.root.1
[2025-11-25 13:58:39] -rw-------. 1 boincer umatlas  13752320 Nov 25 13:58 result.tar.gz
13:59:01 (3615104): run_atlas exited; CPU time 247059.179871
13:59:01 (3615104): called boinc_finish(0)

</stderr_txt>
]]>

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