Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:33:51 (72784): wrapper (7.7.26015): starting
04:33:51 (72784): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 04:33:51] Arguments: --nthreads 9
[2025-11-24 04:33:51] Threads: 9
[2025-11-24 04:33:51] Checking for CVMFS
[2025-11-24 04:33:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 04:33:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 04:33:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 04:33:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 04:33:51] 2.13.3.0 3025293 5898 93896 153240 2 81 13896267 37030912 1932 16776704 0 6496660 99.912 666154 16375 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 04:33:51] CVMFS is ok
[2025-11-24 04:33:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 04:33:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 04:33:51] Further information can be found at the LHC@home message board.
[2025-11-24 04:33:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 04:33:51] Checking for apptainer binary...
[2025-11-24 04:33:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 04:33:51] Running /usr/bin/apptainer --version
[2025-11-24 04:33:51] apptainer version 1.4.4-1.el9
[2025-11-24 04:33:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 04:33:51] c-205-37.aglt2.org
[2025-11-24 04:33:51] apptainer works
[2025-11-24 04:33:51] Set ATHENA_PROC_NUMBER=9
[2025-11-24 04:33:51] Set ATHENA_CORE_NUMBER=9
[2025-11-24 04:33:51] Starting ATLAS job with PandaID=6895356908
[2025-11-24 04:33:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 13:18:57]  *** The last 200 lines of the pilot log: ***
[2025-11-24 13:18:57] 2025-11-24 18:17:52,475 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:18:57] 2025-11-24 18:17:53,339 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 13:18:57] 2025-11-24 18:17:53,345 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2637.5271562500006
[2025-11-24 13:18:57] 2025-11-24 18:17:53,351 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895356908/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 13:18:57] 2025-11-24 18:17:53,352 | INFO     | extracted standard info from prmon json
[2025-11-24 13:18:57] 2025-11-24 18:17:53,352 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 13:18:57] 2025-11-24 18:17:53,352 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 13:18:57] 2025-11-24 18:17:53,362 | INFO     | fitting pss+swap vs Time
[2025-11-24 13:18:57] 2025-11-24 18:17:53,363 | INFO     | sum of square deviations: 42354406340.76499
[2025-11-24 13:18:57] 2025-11-24 18:17:53,370 | INFO     | sum of deviations: 558899156039.8387
[2025-11-24 13:18:57] 2025-11-24 18:17:53,371 | INFO     | mean x: 1763992542.0213592
[2025-11-24 13:18:57] 2025-11-24 18:17:53,371 | INFO     | mean y: 3130802.287378641
[2025-11-24 13:18:57] 2025-11-24 18:17:53,371 | INFO     | intersect: -23274115372.862305
[2025-11-24 13:18:57] 2025-11-24 18:17:53,372 | INFO     | chi2: 4.533512426714126
[2025-11-24 13:18:57] 2025-11-24 18:17:53,373 | INFO     | sum of square deviations: 41132721673.26284
[2025-11-24 13:18:57] 2025-11-24 18:17:53,380 | INFO     | sum of deviations: 705142302222.6246
[2025-11-24 13:18:57] 2025-11-24 18:17:53,380 | INFO     | mean x: 1763992389.5215685
[2025-11-24 13:18:57] 2025-11-24 18:17:53,380 | INFO     | mean y: 3149022.1705882354
[2025-11-24 13:18:57] 2025-11-24 18:17:53,380 | INFO     | intersect: -30237146393.509796
[2025-11-24 13:18:57] 2025-11-24 18:17:53,381 | INFO     | chi2: 2.2543044636022342
[2025-11-24 13:18:57] 2025-11-24 18:17:53,381 | INFO     | current chi2=2.2543044636022342 (change=50.2746600997817 %)
[2025-11-24 13:18:57] 2025-11-24 18:17:53,382 | INFO     | sum of square deviations: 39934758380.76049
[2025-11-24 13:18:57] 2025-11-24 18:17:53,389 | INFO     | sum of deviations: 703429836718.3495
[2025-11-24 13:18:57] 2025-11-24 18:17:53,389 | INFO     | mean x: 1763992237.0217822
[2025-11-24 13:18:57] 2025-11-24 18:17:53,389 | INFO     | mean y: 3148791.9683168316
[2025-11-24 13:18:57] 2025-11-24 18:17:53,389 | INFO     | intersect: -31068649850.952095
[2025-11-24 13:18:57] 2025-11-24 18:17:53,390 | INFO     | chi2: 2.1897510406470184
[2025-11-24 13:18:57] 2025-11-24 18:17:53,390 | INFO     | current chi2=2.1897510406470184 (change=2.86356275283524 %)
[2025-11-24 13:18:57] 2025-11-24 18:17:53,390 | INFO     | right removable region: 504
[2025-11-24 13:18:57] 2025-11-24 18:17:53,391 | INFO     | sum of square deviations: 41132714963.26283
[2025-11-24 13:18:57] 2025-11-24 18:17:53,398 | INFO     | sum of deviations: 410785443841.8232
[2025-11-24 13:18:57] 2025-11-24 18:17:53,398 | INFO     | mean x: 1763992694.5215685
[2025-11-24 13:18:57] 2025-11-24 18:17:53,399 | INFO     | mean y: 3149246.970588235
[2025-11-24 13:18:57] 2025-11-24 18:17:53,399 | INFO     | intersect: -17613546431.88172
[2025-11-24 13:18:57] 2025-11-24 18:17:53,399 | INFO     | chi2: 2.4729164668759336
[2025-11-24 13:18:57] 2025-11-24 18:17:53,400 | INFO     | current chi2=2.4729164668759336 (change=45.45252700082936 %)
[2025-11-24 13:18:57] 2025-11-24 18:17:53,400 | INFO     | sum of square deviations: 39934744960.76049
[2025-11-24 13:18:57] 2025-11-24 18:17:53,407 | INFO     | sum of deviations: 377177616315.826
[2025-11-24 13:18:57] 2025-11-24 18:17:53,408 | INFO     | mean x: 1763992847.0217822
[2025-11-24 13:18:57] 2025-11-24 18:17:53,409 | INFO     | mean y: 3153521.015841584
[2025-11-24 13:18:57] 2025-11-24 18:17:53,409 | INFO     | intersect: -16657491686.349293
[2025-11-24 13:18:57] 2025-11-24 18:17:53,410 | INFO     | chi2: 2.4337197185281365
[2025-11-24 13:18:57] 2025-11-24 18:17:53,410 | INFO     | current chi2=2.4337197185281365 (change=1.5850413417851845 %)
[2025-11-24 13:18:57] 2025-11-24 18:17:53,410 | INFO     | left removable region: 20
[2025-11-24 13:18:57] 2025-11-24 18:17:53,411 | INFO     | sum of square deviations: 35157105216.79334
[2025-11-24 13:18:57] 2025-11-24 18:17:53,417 | INFO     | sum of deviations: 480789710538.54596
[2025-11-24 13:18:57] 2025-11-24 18:17:53,418 | INFO     | mean x: 1763992816.520661
[2025-11-24 13:18:57] 2025-11-24 18:17:53,418 | INFO     | mean y: 3177362.7954545454
[2025-11-24 13:18:57] 2025-11-24 18:17:53,418 | INFO     | intersect: -24120242083.067516
[2025-11-24 13:18:57] 2025-11-24 18:17:53,419 | INFO     | chi2: 0.06469745570533059
[2025-11-24 13:18:57] 2025-11-24 18:17:53,419 | INFO     | current memory leak: 13.68 B/s (using 484 data points, chi2=0.06)
[2025-11-24 13:18:57] 2025-11-24 18:17:53,420 | INFO     | could have reported an average CPU frequency of 2611 MHz (21 samples)
[2025-11-24 13:18:57] 2025-11-24 18:17:53,420 | INFO     | ..............................
[2025-11-24 13:18:57] 2025-11-24 18:17:53,420 | INFO     | . Timing measurements:
[2025-11-24 13:18:57] 2025-11-24 18:17:53,421 | INFO     | . get job = 0 s
[2025-11-24 13:18:57] 2025-11-24 18:17:53,421 | INFO     | . initial setup = 2 s
[2025-11-24 13:18:57] 2025-11-24 18:17:53,421 | INFO     | . payload setup = 5 s
[2025-11-24 13:18:57] 2025-11-24 18:17:53,421 | INFO     | . stage-in = 0 s
[2025-11-24 13:18:57] 2025-11-24 18:17:53,421 | INFO     | . payload execution = 31398 s
[2025-11-24 13:18:57] 2025-11-24 18:17:53,421 | INFO     | . stage-out = 3 s
[2025-11-24 13:18:57] 2025-11-24 18:17:53,422 | INFO     | . log creation = 0 s
[2025-11-24 13:18:57] 2025-11-24 18:17:53,422 | INFO     | ..............................
[2025-11-24 13:18:57] 2025-11-24 18:17:53,526 | INFO     | 
[2025-11-24 13:18:57] 2025-11-24 18:17:53,527 | INFO     | job summary report
[2025-11-24 13:18:57] 2025-11-24 18:17:53,527 | INFO     | --------------------------------------------------
[2025-11-24 13:18:57] 2025-11-24 18:17:53,527 | INFO     | PanDA job id: 6895356908
[2025-11-24 13:18:57] 2025-11-24 18:17:53,528 | INFO     | task id: 47556137
[2025-11-24 13:18:57] 2025-11-24 18:17:53,528 | INFO     | errors: (none)
[2025-11-24 13:18:57] 2025-11-24 18:17:53,528 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 13:18:57] 2025-11-24 18:17:53,528 | INFO     | pilot state: finished 
[2025-11-24 13:18:57] 2025-11-24 18:17:53,528 | INFO     | transexitcode: 0
[2025-11-24 13:18:57] 2025-11-24 18:17:53,528 | INFO     | exeerrorcode: 0
[2025-11-24 13:18:57] 2025-11-24 18:17:53,529 | INFO     | exeerrordiag: 
[2025-11-24 13:18:57] 2025-11-24 18:17:53,529 | INFO     | exitcode: 0
[2025-11-24 13:18:57] 2025-11-24 18:17:53,529 | INFO     | exitmsg: OK
[2025-11-24 13:18:57] 2025-11-24 18:17:53,529 | INFO     | cpuconsumptiontime: 278010 s
[2025-11-24 13:18:57] 2025-11-24 18:17:53,529 | INFO     | nevents: 1000
[2025-11-24 13:18:57] 2025-11-24 18:17:53,530 | INFO     | neventsw: 0
[2025-11-24 13:18:57] 2025-11-24 18:17:53,530 | INFO     | pid: 82865
[2025-11-24 13:18:57] 2025-11-24 18:17:53,530 | INFO     | pgrp: 82865
[2025-11-24 13:18:57] 2025-11-24 18:17:53,530 | INFO     | corecount: 9
[2025-11-24 13:18:57] 2025-11-24 18:17:53,530 | INFO     | event service: False
[2025-11-24 13:18:57] 2025-11-24 18:17:53,530 | INFO     | sizes: {0: 2298807, 3: 2299069, 11: 2299097, 31405: 2338485, 31409: 2348270, 31411: 2348326, 31417: 2348700}
[2025-11-24 13:18:57] 2025-11-24 18:17:53,531 | INFO     | --------------------------------------------------
[2025-11-24 13:18:57] 2025-11-24 18:17:53,531 | INFO     | 
[2025-11-24 13:18:57] 2025-11-24 18:17:53,531 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-24 13:18:57] 2025-11-24 18:17:53,546 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 13:18:57] 2025-11-24 18:17:53,546 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 13:18:57] 2025-11-24 18:17:53,547 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 13:18:57] 2025-11-24 18:17:53,547 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 13:18:57] 2025-11-24 18:17:53,547 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 13:18:57] 2025-11-24 18:17:53,547 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 13:18:57] 2025-11-24 18:17:53,548 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 13:18:57] 2025-11-24 18:17:53,548 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 13:18:57] 2025-11-24 18:17:53,548 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 13:18:57] 2025-11-24 18:17:53,548 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 13:18:57] 2025-11-24 18:17:53,548 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 13:18:57] 2025-11-24 18:17:53,548 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 13:18:57] 2025-11-24 18:17:53,549 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 13:18:57] 2025-11-24 18:17:53,549 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 13:18:57] 2025-11-24 18:17:53,549 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 13:18:57] 2025-11-24 18:17:53,549 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 13:18:57] 2025-11-24 18:17:53,549 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 13:18:57] 2025-11-24 18:17:53,550 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 13:18:57] 2025-11-24 18:17:53,550 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 13:18:57] 2025-11-24 18:17:53,550 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 13:18:57] 2025-11-24 18:17:53,550 | INFO     | job 6895356908 has completed (purged errors)
[2025-11-24 13:18:57] 2025-11-24 18:17:53,551 | INFO     | overall cleanup function is called
[2025-11-24 13:18:57] 2025-11-24 18:17:53,776 | INFO     | PID=76481 has CPU usage=14.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 13:18:57] 2025-11-24 18:17:53,777 | INFO     | .. there are 3 such processes running
[2025-11-24 13:18:57] 2025-11-24 18:17:54,572 | INFO     | --- collectZombieJob: --- 10, [82865]
[2025-11-24 13:18:57] 2025-11-24 18:17:54,572 | INFO     | zombie collector waiting for pid 82865
[2025-11-24 13:18:57] 2025-11-24 18:17:54,572 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 13:18:57] 2025-11-24 18:17:54,573 | INFO     | collected zombie processes
[2025-11-24 13:18:57] 2025-11-24 18:17:54,573 | INFO     | will attempt to kill all subprocesses of pid=82865
[2025-11-24 13:18:57] 2025-11-24 18:17:54,761 | INFO     | process IDs to be killed: [82865] (in reverse order)
[2025-11-24 13:18:57] 2025-11-24 18:17:54,815 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 13:18:57] 2025-11-24 18:17:54,815 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 13:18:57] 2025-11-24 18:17:54,820 | INFO     | did not find any defunct processes belonging to 82865
[2025-11-24 13:18:57] 2025-11-24 18:17:54,825 | INFO     | did not find any defunct processes belonging to 82865
[2025-11-24 13:18:57] 2025-11-24 18:17:54,826 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 13:18:57] 2025-11-24 18:17:54,826 | INFO     | ready for new job
[2025-11-24 13:18:57] 2025-11-24 18:17:54,826 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 13:18:57] 2025-11-24 18:17:54,829 | INFO     | ***************************************
[2025-11-24 13:18:57] 2025-11-24 18:17:54,830 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 13:18:57] 2025-11-24 18:17:54,830 | INFO     | ***************************************
[2025-11-24 13:18:57] 2025-11-24 18:17:54,830 | INFO     | 
[2025-11-24 13:18:57] 2025-11-24 18:17:54,832 | INFO     | architecture information:
[2025-11-24 13:18:57] 2025-11-24 18:17:54,832 | INFO     | executing command: cat /etc/os-release
[2025-11-24 13:18:57] 2025-11-24 18:17:54,844 | INFO     | cat /etc/os-release:
[2025-11-24 13:18:57] NAME="CentOS Linux"
[2025-11-24 13:18:57] VERSION="7 (Core)"
[2025-11-24 13:18:57] ID="centos"
[2025-11-24 13:18:57] ID_LIKE="rhel fedora"
[2025-11-24 13:18:57] VERSION_ID="7"
[2025-11-24 13:18:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 13:18:57] ANSI_COLOR="0;31"
[2025-11-24 13:18:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 13:18:57] HOME_URL="https://www.centos.org/"
[2025-11-24 13:18:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 13:18:57] 
[2025-11-24 13:18:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 13:18:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 13:18:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 13:18:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 13:18:57] 
[2025-11-24 13:18:57] 2025-11-24 18:17:54,845 | INFO     | ***************************************
[2025-11-24 13:18:57] 2025-11-24 18:17:55,348 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-24 13:18:57] 2025-11-24 18:17:55,361 | INFO     | sufficient remaining disk space (38780534784 B)
[2025-11-24 13:18:57] 2025-11-24 18:17:55,362 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 13:18:57] 2025-11-24 18:17:55,362 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 13:18:57] 2025-11-24 18:17:55,362 | INFO     | update_server=False
[2025-11-24 13:18:57] 2025-11-24 18:17:55,363 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 13:18:57] 2025-11-24 18:17:55,363 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:18:57] 2025-11-24 18:17:56,002 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:18:57] 2025-11-24 18:17:56,003 | INFO     | aborting loop
[2025-11-24 13:18:57] 2025-11-24 18:17:56,097 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 13:18:57] 2025-11-24 18:17:56,129 | INFO     | all data control threads have been joined
[2025-11-24 13:18:57] 2025-11-24 18:17:56,368 | INFO     | [job] retrieve thread has finished
[2025-11-24 13:18:57] 2025-11-24 18:17:56,368 | INFO     | [job] queue monitor thread has finished
[2025-11-24 13:18:57] 2025-11-24 18:17:56,393 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 13:18:57] 2025-11-24 18:17:56,536 | INFO     | [payload] failed_post thread has finished
[2025-11-24 13:18:57] 2025-11-24 18:17:56,586 | INFO     | [data] copytool_in thread has finished
[2025-11-24 13:18:57] 2025-11-24 18:17:56,771 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 13:18:57] 2025-11-24 18:17:56,771 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 13:18:57] 2025-11-24 18:17:56,824 | INFO     | all payload control threads have been joined
[2025-11-24 13:18:57] 2025-11-24 18:17:56,988 | INFO     | all job control threads have been joined
[2025-11-24 13:18:57] 2025-11-24 18:17:57,008 | INFO     | [job] job monitor thread has finished
[2025-11-24 13:18:57] 2025-11-24 18:17:57,134 | INFO     | [data] control thread has finished
[2025-11-24 13:18:57] 2025-11-24 18:17:57,185 | INFO     | [job] validate thread has finished
[2025-11-24 13:18:57] 2025-11-24 18:17:57,221 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 13:18:57] 2025-11-24 18:17:57,829 | INFO     | [payload] control thread has finished
[2025-11-24 13:18:57] 2025-11-24 18:17:57,890 | INFO     | [payload] validate_post thread has finished
[2025-11-24 13:18:57] 2025-11-24 18:17:57,994 | INFO     | [job] control thread has finished
[2025-11-24 13:18:57] 2025-11-24 18:17:58,102 | INFO     | [data] copytool_out thread has finished
[2025-11-24 13:18:57] 2025-11-24 18:17:58,195 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 13:18:57] 2025-11-24 18:18:02,198 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 13:18:57] 2025-11-24 18:18:26,095 | INFO     | PID=76481 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 13:18:57] 2025-11-24 18:18:26,095 | INFO     | .. there are 3 such processes running
[2025-11-24 13:18:57] 2025-11-24 18:18:26,096 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 13:18:57] 2025-11-24 18:18:26,097 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 13:18:57] 2025-11-24 18:18:26,097 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 13:18:57] 2025-11-24 18:18:50,789 | INFO     | [monitor] cgroup control has ended
[2025-11-24 13:18:57] 2025-11-24 18:18:52,135 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139834810349376)>', '<ExcThread(monitor, started 139834320475904)>']
[2025-11-24 13:18:57] 2025-11-24 18:18:52,211 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 13:18:57] 2025-11-24 18:18:52,211 | INFO     | [monitor] control thread has ended
[2025-11-24 13:18:57] 2025-11-24 18:18:57,141 | INFO     | all workflow threads have been joined
[2025-11-24 13:18:57] 2025-11-24 18:18:57,142 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 13:18:57] 2025-11-24 18:18:57,142 | INFO     | traces error code: 0
[2025-11-24 13:18:57] 2025-11-24 18:18:57,142 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 13:18:57] 2025-11-24 18:18:57,253 [wrapper] ==== pilot stdout END ====
[2025-11-24 13:18:57] 2025-11-24 18:18:57,255 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 13:18:57] 2025-11-24 18:18:57,258 [wrapper] pilotpid: 76481
[2025-11-24 13:18:57] 2025-11-24 18:18:57,260 [wrapper] Pilot exit status: 0
[2025-11-24 13:18:57] 2025-11-24 18:18:57,268 [wrapper] pandaids: 6895356908
[2025-11-24 13:18:57] 2025-11-24 18:18:57,305 [wrapper] cleanup supervisor_pilot  551619 76482
[2025-11-24 13:18:57] 2025-11-24 18:18:57,308 [wrapper] Test setup, not cleaning
[2025-11-24 13:18:57] 2025-11-24 18:18:57,310 [wrapper] apfmon messages muted
[2025-11-24 13:18:57] 2025-11-24 18:18:57,313 [wrapper] ==== wrapper stdout END ====
[2025-11-24 13:18:57] 2025-11-24 18:18:57,315 [wrapper] ==== wrapper stderr END ====
[2025-11-24 13:18:57]  *** Error codes and diagnostics ***
[2025-11-24 13:18:57]     "exeErrorCode": 0,
[2025-11-24 13:18:57]     "exeErrorDiag": "",
[2025-11-24 13:18:57]     "pilotErrorCode": 0,
[2025-11-24 13:18:57]     "pilotErrorDiag": "",
[2025-11-24 13:18:57]  *** Listing of results directory ***
[2025-11-24 13:18:57] total 1325172
[2025-11-24 13:18:57] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 06:12 pilot3.tar.gz
[2025-11-24 13:18:57] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 06:30 queuedata.json
[2025-11-24 13:18:57] -rwx------. 1 boincer umatlas     36292 Nov 23 06:31 runpilot2-wrapper.sh
[2025-11-24 13:18:57] -rw-r--r--. 1 boincer umatlas       100 Nov 24 04:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 13:18:57] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 04:33 run_atlas
[2025-11-24 13:18:57] -rw-r--r--. 1 boincer umatlas       105 Nov 24 04:33 job.xml
[2025-11-24 13:18:57] -rw-r--r--. 2 boincer umatlas 408115466 Nov 24 04:33 EVNT.47483658._000708.pool.root.1
[2025-11-24 13:18:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 04:33 start_atlas.sh
[2025-11-24 13:18:57] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 04:33 shared
[2025-11-24 13:18:57] -rw-r--r--. 2 boincer umatlas    590104 Nov 24 04:33 input.tar.gz
[2025-11-24 13:18:57] -rw-r--r--. 1 boincer umatlas         0 Nov 24 04:33 boinc_lockfile
[2025-11-24 13:18:57] -rw-r--r--. 1 boincer umatlas      2786 Nov 24 04:33 pandaJob.out
[2025-11-24 13:18:57] -rw-------. 1 boincer umatlas    989824 Nov 24 04:33 agis_schedconf.cvmfs.json
[2025-11-24 13:18:57] drwx------. 5 boincer umatlas      4096 Nov 24 04:34 pilot3
[2025-11-24 13:18:57] -rw-r--r--. 1 boincer umatlas       532 Nov 24 13:11 boinc_task_state.xml
[2025-11-24 13:18:57] -rw-------. 1 boincer umatlas 932169369 Nov 24 13:17 HITS.47556137._007039.pool.root.1
[2025-11-24 13:18:57] -rw-------. 1 boincer umatlas      1045 Nov 24 13:17 memory_monitor_summary.json
[2025-11-24 13:18:57] -rw-------. 1 boincer umatlas   1516227 Nov 24 13:17 agis_ddmendpoints.agis.ALL.json
[2025-11-24 13:18:57] -rw-------. 1 boincer umatlas   1915356 Nov 24 13:17 log.47556137._007039.job.log.tgz.1
[2025-11-24 13:18:57] -rw-------. 1 boincer umatlas      8621 Nov 24 13:17 heartbeat.json
[2025-11-24 13:18:57] -rw-------. 1 boincer umatlas        95 Nov 24 13:18 pilot_heartbeat.json
[2025-11-24 13:18:57] -rw-r--r--. 1 boincer umatlas      6531 Nov 24 13:18 init_data.xml
[2025-11-24 13:18:57] -rw-r--r--. 1 boincer umatlas        29 Nov 24 13:18 wrapper_checkpoint.txt
[2025-11-24 13:18:57] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 13:18 boinc_mmap_file
[2025-11-24 13:18:57] -rw-------. 1 boincer umatlas      4821 Nov 24 13:18 pilotlog.txt
[2025-11-24 13:18:57] -rw-------. 1 boincer umatlas   4470877 Nov 24 13:18 log.47556137._007039.job.log.1
[2025-11-24 13:18:57] -rw-------. 1 boincer umatlas       353 Nov 24 13:18 output.list
[2025-11-24 13:18:57] -rw-r--r--. 1 boincer umatlas       620 Nov 24 13:18 runtime_log
[2025-11-24 13:18:57] -rw-------. 1 boincer umatlas   6410240 Nov 24 13:18 result.tar.gz
[2025-11-24 13:18:57] -rw-r--r--. 1 boincer umatlas      8818 Nov 24 13:18 runtime_log.err
[2025-11-24 13:18:57] -rw-------. 1 boincer umatlas       659 Nov 24 13:18 llAODmwUNh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrqKKDm9oJAYn.diag
[2025-11-24 13:18:57] -rw-r--r--. 1 boincer umatlas     21379 Nov 24 13:18 stderr.txt
[2025-11-24 13:18:57] HITS file was successfully produced:
[2025-11-24 13:18:57] -rw-------. 1 boincer umatlas 932169369 Nov 24 13:17 shared/HITS.pool.root.1
[2025-11-24 13:18:57]  *** Contents of shared directory: ***
[2025-11-24 13:18:57] total 1315740
[2025-11-24 13:18:57] -rw-r--r--. 2 boincer umatlas 408115466 Nov 24 04:33 ATLAS.root_0
[2025-11-24 13:18:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 04:33 start_atlas.sh
[2025-11-24 13:18:57] -rw-r--r--. 2 boincer umatlas    590104 Nov 24 04:33 input.tar.gz
[2025-11-24 13:18:57] -rw-------. 1 boincer umatlas 932169369 Nov 24 13:17 HITS.pool.root.1
[2025-11-24 13:18:57] -rw-------. 1 boincer umatlas   6410240 Nov 24 13:18 result.tar.gz
13:18:58 (72784): run_atlas exited; CPU time 278319.894634
13:18:58 (72784): called boinc_finish(0)

</stderr_txt>
]]>

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