Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:58 (2346553): wrapper (7.7.26015): starting
00:04:58 (2346553): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:04:58] Arguments: --nthreads 9
[2025-11-25 00:04:58] Threads: 9
[2025-11-25 00:04:58] Checking for CVMFS
[2025-11-25 00:04:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:04:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:04:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:05:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:05:00] 2.13.3.0 14259 26729 351256 153270 2 330 20411791 32935937 27795 16776704 0 158386794 99.789 84869371 34078 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:05:00] CVMFS is ok
[2025-11-25 00:05:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:05:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:05:00] Further information can be found at the LHC@home message board.
[2025-11-25 00:05:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:05:00] Checking for apptainer binary...
[2025-11-25 00:05:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:05:00] Running /usr/bin/apptainer --version
[2025-11-25 00:05:00] apptainer version 1.4.4-1.el9
[2025-11-25 00:05:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:05:01] c-4-36.aglt2.org
[2025-11-25 00:05:01] apptainer works
[2025-11-25 00:05:01] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:05:01] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:05:01] Starting ATLAS job with PandaID=6895350753
[2025-11-25 00:05:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 17:12:53]  *** The last 200 lines of the pilot log: ***
[2025-11-25 17:12:53] 2025-11-25 22:12:19,419 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895350753/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 17:12:53] 2025-11-25 22:12:19,420 | INFO     | extracted standard info from prmon json
[2025-11-25 17:12:53] 2025-11-25 22:12:19,420 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 17:12:53] 2025-11-25 22:12:19,421 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 17:12:53] 2025-11-25 22:12:19,437 | INFO     | fitting pss+swap vs Time
[2025-11-25 17:12:53] 2025-11-25 22:12:19,438 | INFO     | sum of square deviations: 317572486551.26984
[2025-11-25 17:12:53] 2025-11-25 22:12:19,459 | INFO     | sum of deviations: 2565730156453.461
[2025-11-25 17:12:53] 2025-11-25 22:12:19,460 | INFO     | mean x: 1764077976.6031747
[2025-11-25 17:12:53] 2025-11-25 22:12:19,460 | INFO     | mean y: 3115447.106150794
[2025-11-25 17:12:53] 2025-11-25 22:12:19,460 | INFO     | intersect: -14249215137.506546
[2025-11-25 17:12:53] 2025-11-25 22:12:19,461 | INFO     | chi2: 8.54244684080671
[2025-11-25 17:12:53] 2025-11-25 22:12:19,462 | INFO     | sum of square deviations: 312870263115.1539
[2025-11-25 17:12:53] 2025-11-25 22:12:19,481 | INFO     | sum of deviations: 2951209488321.853
[2025-11-25 17:12:53] 2025-11-25 22:12:19,481 | INFO     | mean x: 1764077824.108674
[2025-11-25 17:12:53] 2025-11-25 22:12:19,481 | INFO     | mean y: 3127948.1665004985
[2025-11-25 17:12:53] 2025-11-25 22:12:19,481 | INFO     | intersect: -16636878554.246058
[2025-11-25 17:12:53] 2025-11-25 22:12:19,482 | INFO     | chi2: 5.123146757164671
[2025-11-25 17:12:53] 2025-11-25 22:12:19,482 | INFO     | current chi2=5.123146757164671 (change=40.027174267076106 %)
[2025-11-25 17:12:53] 2025-11-25 22:12:19,483 | INFO     | sum of square deviations: 308214630778.7055
[2025-11-25 17:12:53] 2025-11-25 22:12:19,494 | INFO     | time since job start (61589s) is within the limit (172800.0s)
[2025-11-25 17:12:53] 2025-11-25 22:12:19,501 | INFO     | sum of deviations: 3032887895891.356
[2025-11-25 17:12:53] 2025-11-25 22:12:19,501 | INFO     | mean x: 1764077671.6132264
[2025-11-25 17:12:53] 2025-11-25 22:12:19,501 | INFO     | mean y: 3130618.4879759517
[2025-11-25 17:12:53] 2025-11-25 22:12:19,502 | INFO     | intersect: -17355713782.021282
[2025-11-25 17:12:53] 2025-11-25 22:12:19,502 | INFO     | chi2: 4.7808056614636305
[2025-11-25 17:12:53] 2025-11-25 22:12:19,502 | INFO     | current chi2=4.7808056614636305 (change=6.682242612360841 %)
[2025-11-25 17:12:53] 2025-11-25 22:12:19,502 | INFO     | right removable region: 997
[2025-11-25 17:12:53] 2025-11-25 22:12:19,503 | INFO     | sum of square deviations: 312869584795.1539
[2025-11-25 17:12:53] 2025-11-25 22:12:19,525 | INFO     | sum of deviations: 2152666492273.4644
[2025-11-25 17:12:53] 2025-11-25 22:12:19,525 | INFO     | mean x: 1764078129.108674
[2025-11-25 17:12:53] 2025-11-25 22:12:19,526 | INFO     | mean y: 3128838.4636091725
[2025-11-25 17:12:53] 2025-11-25 22:12:19,526 | INFO     | intersect: -12134426433.235415
[2025-11-25 17:12:53] 2025-11-25 22:12:19,527 | INFO     | chi2: 4.861397174732233
[2025-11-25 17:12:53] 2025-11-25 22:12:19,527 | INFO     | current chi2=4.861397174732233 (change=43.09127975476936 %)
[2025-11-25 17:12:53] 2025-11-25 22:12:19,529 | INFO     | sum of square deviations: 308213518263.1546
[2025-11-25 17:12:53] 2025-11-25 22:12:19,553 | INFO     | sum of deviations: 1966666585607.082
[2025-11-25 17:12:53] 2025-11-25 22:12:19,553 | INFO     | mean x: 1764078281.6112225
[2025-11-25 17:12:53] 2025-11-25 22:12:19,553 | INFO     | mean y: 3134923.24248497
[2025-11-25 17:12:53] 2025-11-25 22:12:19,553 | INFO     | intersect: -11253197473.825823
[2025-11-25 17:12:53] 2025-11-25 22:12:19,555 | INFO     | chi2: 4.059751920173009
[2025-11-25 17:12:53] 2025-11-25 22:12:19,555 | INFO     | current chi2=4.059751920173009 (change=16.490017699559363 %)
[2025-11-25 17:12:53] 2025-11-25 22:12:19,555 | INFO     | left removable region: 20
[2025-11-25 17:12:53] 2025-11-25 22:12:19,556 | INFO     | sum of square deviations: 289164038289.1604
[2025-11-25 17:12:53] 2025-11-25 22:12:19,579 | INFO     | sum of deviations: 2279907944475.8926
[2025-11-25 17:12:53] 2025-11-25 22:12:19,579 | INFO     | mean x: 1764078251.1146367
[2025-11-25 17:12:53] 2025-11-25 22:12:19,580 | INFO     | mean y: 3155744.2241555783
[2025-11-25 17:12:53] 2025-11-25 22:12:19,580 | INFO     | intersect: -13905683139.02423
[2025-11-25 17:12:53] 2025-11-25 22:12:19,581 | INFO     | chi2: 0.14403460171741175
[2025-11-25 17:12:53] 2025-11-25 22:12:19,581 | INFO     | current memory leak: 7.88 B/s (using 977 data points, chi2=0.14)
[2025-11-25 17:12:53] 2025-11-25 22:12:19,582 | INFO     | could have reported an average CPU frequency of 2600 MHz (37 samples)
[2025-11-25 17:12:53] 2025-11-25 22:12:19,583 | INFO     | ..............................
[2025-11-25 17:12:53] 2025-11-25 22:12:19,583 | INFO     | . Timing measurements:
[2025-11-25 17:12:53] 2025-11-25 22:12:19,583 | INFO     | . get job = 0 s
[2025-11-25 17:12:53] 2025-11-25 22:12:19,583 | INFO     | . initial setup = 7 s
[2025-11-25 17:12:53] 2025-11-25 22:12:19,583 | INFO     | . payload setup = 34 s
[2025-11-25 17:12:53] 2025-11-25 22:12:19,583 | INFO     | . stage-in = 0 s
[2025-11-25 17:12:53] 2025-11-25 22:12:19,583 | INFO     | . payload execution = 61481 s
[2025-11-25 17:12:53] 2025-11-25 22:12:19,584 | INFO     | . stage-out = 5 s
[2025-11-25 17:12:53] 2025-11-25 22:12:19,584 | INFO     | . log creation = 0 s
[2025-11-25 17:12:53] 2025-11-25 22:12:19,584 | INFO     | ..............................
[2025-11-25 17:12:53] 2025-11-25 22:12:19,685 | INFO     | 
[2025-11-25 17:12:53] 2025-11-25 22:12:19,685 | INFO     | job summary report
[2025-11-25 17:12:53] 2025-11-25 22:12:19,685 | INFO     | --------------------------------------------------
[2025-11-25 17:12:53] 2025-11-25 22:12:19,685 | INFO     | PanDA job id: 6895350753
[2025-11-25 17:12:53] 2025-11-25 22:12:19,685 | INFO     | task id: 47556149
[2025-11-25 17:12:53] 2025-11-25 22:12:19,686 | INFO     | errors: (none)
[2025-11-25 17:12:53] 2025-11-25 22:12:19,686 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 17:12:53] 2025-11-25 22:12:19,686 | INFO     | pilot state: finished 
[2025-11-25 17:12:53] 2025-11-25 22:12:19,686 | INFO     | transexitcode: 0
[2025-11-25 17:12:53] 2025-11-25 22:12:19,686 | INFO     | exeerrorcode: 0
[2025-11-25 17:12:53] 2025-11-25 22:12:19,686 | INFO     | exeerrordiag: 
[2025-11-25 17:12:53] 2025-11-25 22:12:19,686 | INFO     | exitcode: 0
[2025-11-25 17:12:53] 2025-11-25 22:12:19,686 | INFO     | exitmsg: OK
[2025-11-25 17:12:53] 2025-11-25 22:12:19,686 | INFO     | cpuconsumptiontime: 302445 s
[2025-11-25 17:12:53] 2025-11-25 22:12:19,687 | INFO     | nevents: 1000
[2025-11-25 17:12:53] 2025-11-25 22:12:19,687 | INFO     | neventsw: 0
[2025-11-25 17:12:53] 2025-11-25 22:12:19,687 | INFO     | pid: 2358271
[2025-11-25 17:12:53] 2025-11-25 22:12:19,687 | INFO     | pgrp: 2358271
[2025-11-25 17:12:53] 2025-11-25 22:12:19,687 | INFO     | corecount: 9
[2025-11-25 17:12:53] 2025-11-25 22:12:19,687 | INFO     | event service: False
[2025-11-25 17:12:53] 2025-11-25 22:12:19,687 | INFO     | sizes: {0: 2284037, 1: 2284065, 2: 2284236, 13: 2284264, 23: 2284320, 26: 2284610, 34: 2284766, 61520: 2339070, 61526: 2348125, 61532: 2348315}
[2025-11-25 17:12:53] 2025-11-25 22:12:19,687 | INFO     | --------------------------------------------------
[2025-11-25 17:12:53] 2025-11-25 22:12:19,687 | INFO     | 
[2025-11-25 17:12:53] 2025-11-25 22:12:19,687 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 17:12:53] 2025-11-25 22:12:19,703 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 17:12:53] 2025-11-25 22:12:19,703 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 17:12:53] 2025-11-25 22:12:19,703 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 17:12:53] 2025-11-25 22:12:19,703 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 17:12:53] 2025-11-25 22:12:19,703 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 17:12:53] 2025-11-25 22:12:19,703 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 17:12:53] 2025-11-25 22:12:19,704 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 17:12:53] 2025-11-25 22:12:19,704 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 17:12:53] 2025-11-25 22:12:19,704 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 17:12:53] 2025-11-25 22:12:19,704 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 17:12:53] 2025-11-25 22:12:19,704 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 17:12:53] 2025-11-25 22:12:19,704 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 17:12:53] 2025-11-25 22:12:19,704 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 17:12:53] 2025-11-25 22:12:19,704 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 17:12:53] 2025-11-25 22:12:19,704 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 17:12:53] 2025-11-25 22:12:19,704 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 17:12:53] 2025-11-25 22:12:19,704 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 17:12:53] 2025-11-25 22:12:19,704 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 17:12:53] 2025-11-25 22:12:19,705 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 17:12:53] 2025-11-25 22:12:19,705 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 17:12:53] 2025-11-25 22:12:19,705 | INFO     | job 6895350753 has completed (purged errors)
[2025-11-25 17:12:53] 2025-11-25 22:12:19,705 | INFO     | overall cleanup function is called
[2025-11-25 17:12:53] 2025-11-25 22:12:20,720 | INFO     | --- collectZombieJob: --- 10, [2358271]
[2025-11-25 17:12:53] 2025-11-25 22:12:20,721 | INFO     | zombie collector waiting for pid 2358271
[2025-11-25 17:12:53] 2025-11-25 22:12:20,721 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 17:12:53] 2025-11-25 22:12:20,722 | INFO     | collected zombie processes
[2025-11-25 17:12:53] 2025-11-25 22:12:20,722 | INFO     | will attempt to kill all subprocesses of pid=2358271
[2025-11-25 17:12:53] 2025-11-25 22:12:21,450 | INFO     | process IDs to be killed: [2358271] (in reverse order)
[2025-11-25 17:12:53] 2025-11-25 22:12:21,595 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 17:12:53] 2025-11-25 22:12:21,596 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 17:12:53] 2025-11-25 22:12:21,612 | INFO     | did not find any defunct processes belonging to 2358271
[2025-11-25 17:12:53] 2025-11-25 22:12:21,629 | INFO     | did not find any defunct processes belonging to 2358271
[2025-11-25 17:12:53] 2025-11-25 22:12:21,630 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 17:12:53] 2025-11-25 22:12:21,630 | INFO     | ready for new job
[2025-11-25 17:12:53] 2025-11-25 22:12:21,631 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 17:12:53] 2025-11-25 22:12:21,636 | INFO     | ***************************************
[2025-11-25 17:12:53] 2025-11-25 22:12:21,636 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 17:12:53] 2025-11-25 22:12:21,636 | INFO     | ***************************************
[2025-11-25 17:12:53] 2025-11-25 22:12:21,636 | INFO     | 
[2025-11-25 17:12:53] 2025-11-25 22:12:21,638 | INFO     | architecture information:
[2025-11-25 17:12:53] 2025-11-25 22:12:21,639 | INFO     | executing command: cat /etc/os-release
[2025-11-25 17:12:53] 2025-11-25 22:12:21,668 | INFO     | cat /etc/os-release:
[2025-11-25 17:12:53] NAME="CentOS Linux"
[2025-11-25 17:12:53] VERSION="7 (Core)"
[2025-11-25 17:12:53] ID="centos"
[2025-11-25 17:12:53] ID_LIKE="rhel fedora"
[2025-11-25 17:12:53] VERSION_ID="7"
[2025-11-25 17:12:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 17:12:53] ANSI_COLOR="0;31"
[2025-11-25 17:12:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 17:12:53] HOME_URL="https://www.centos.org/"
[2025-11-25 17:12:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 17:12:53] 
[2025-11-25 17:12:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 17:12:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 17:12:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 17:12:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 17:12:53] 
[2025-11-25 17:12:53] 2025-11-25 22:12:21,669 | INFO     | ***************************************
[2025-11-25 17:12:53] 2025-11-25 22:12:22,183 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 17:12:53] 2025-11-25 22:12:22,301 | INFO     | sufficient remaining disk space (72381104128 B)
[2025-11-25 17:12:53] 2025-11-25 22:12:22,301 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 17:12:53] 2025-11-25 22:12:22,301 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 17:12:53] 2025-11-25 22:12:22,302 | INFO     | update_server=False
[2025-11-25 17:12:53] 2025-11-25 22:12:22,302 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 17:12:53] 2025-11-25 22:12:22,382 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 17:12:53] 2025-11-25 22:12:22,404 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 17:12:53] 2025-11-25 22:12:22,404 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:12:53] 2025-11-25 22:12:22,404 | INFO     | will abort loop
[2025-11-25 17:12:53] 2025-11-25 22:12:22,633 | INFO     | all job control threads have been joined
[2025-11-25 17:12:53] 2025-11-25 22:12:22,736 | INFO     | all payload control threads have been joined
[2025-11-25 17:12:53] 2025-11-25 22:12:23,307 | INFO     | [job] retrieve thread has finished
[2025-11-25 17:12:53] 2025-11-25 22:12:23,408 | INFO     | all data control threads have been joined
[2025-11-25 17:12:53] 2025-11-25 22:12:23,409 | INFO     | [job] job monitor thread has finished
[2025-11-25 17:12:53] 2025-11-25 22:12:23,641 | INFO     | [job] control thread has finished
[2025-11-25 17:12:53] 2025-11-25 22:12:23,667 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 17:12:53] 2025-11-25 22:12:23,669 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 17:12:53] 2025-11-25 22:12:23,742 | INFO     | [payload] control thread has finished
[2025-11-25 17:12:53] 2025-11-25 22:12:23,743 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 17:12:53] 2025-11-25 22:12:23,851 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 17:12:53] 2025-11-25 22:12:24,068 | INFO     | [data] copytool_in thread has finished
[2025-11-25 17:12:53] 2025-11-25 22:12:24,231 | INFO     | [payload] failed_post thread has finished
[2025-11-25 17:12:53] 2025-11-25 22:12:24,300 | INFO     | [job] validate thread has finished
[2025-11-25 17:12:53] 2025-11-25 22:12:24,414 | INFO     | [data] control thread has finished
[2025-11-25 17:12:53] 2025-11-25 22:12:24,711 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:12:53] 2025-11-25 22:12:24,750 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 17:12:53] 2025-11-25 22:12:24,846 | INFO     | [payload] validate_post thread has finished
[2025-11-25 17:12:53] 2025-11-25 22:12:25,716 | INFO     | [job] queue monitor thread has finished
[2025-11-25 17:12:53] 2025-11-25 22:12:25,750 | INFO     | [data] copytool_out thread has finished
[2025-11-25 17:12:53] 2025-11-25 22:12:27,859 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 17:12:53] 2025-11-25 22:12:32,678 | INFO     | job.realtimelogging is not enabled
[2025-11-25 17:12:53] 2025-11-25 22:12:33,682 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 17:12:53] 2025-11-25 22:12:39,561 | INFO     | [monitor] cgroup control has ended
[2025-11-25 17:12:53] 2025-11-25 22:12:40,133 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139688831944512)>', '<ExcThread(monitor, started 139688459343616)>']
[2025-11-25 17:12:53] 2025-11-25 22:12:45,158 | INFO     | all workflow threads have been joined
[2025-11-25 17:12:53] 2025-11-25 22:12:45,159 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 17:12:53] 2025-11-25 22:12:45,159 | INFO     | traces error code: 0
[2025-11-25 17:12:53] 2025-11-25 22:12:45,160 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 17:12:53] 2025-11-25 22:12:51,572 | INFO     | 61598s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 17:12:53] 2025-11-25 22:12:53,137 | INFO     | PID=2350662 has CPU usage=9.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 17:12:53] 2025-11-25 22:12:53,137 | INFO     | .. there are 42 such processes running
[2025-11-25 17:12:53] 2025-11-25 22:12:53,137 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 17:12:53] 2025-11-25 22:12:53,137 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 17:12:53] 2025-11-25 22:12:53,137 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 17:12:53] 2025-11-25 22:12:53,138 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 17:12:53] 2025-11-25 22:12:53,138 | INFO     | [monitor] control thread has ended
[2025-11-25 17:12:53] 2025-11-25 22:12:53,281 [wrapper] ==== pilot stdout END ====
[2025-11-25 17:12:53] 2025-11-25 22:12:53,288 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 17:12:53] 2025-11-25 22:12:53,291 [wrapper] pilotpid: 2350662
[2025-11-25 17:12:53] 2025-11-25 22:12:53,319 [wrapper] Pilot exit status: 0
[2025-11-25 17:12:53] 2025-11-25 22:12:53,335 [wrapper] pandaids: 6895350753
[2025-11-25 17:12:53] 2025-11-25 22:12:53,447 [wrapper] cleanup supervisor_pilot 1451362 2350663
[2025-11-25 17:12:53] 2025-11-25 22:12:53,449 [wrapper] Test setup, not cleaning
[2025-11-25 17:12:53] 2025-11-25 22:12:53,452 [wrapper] apfmon messages muted
[2025-11-25 17:12:53] 2025-11-25 22:12:53,454 [wrapper] ==== wrapper stdout END ====
[2025-11-25 17:12:53] 2025-11-25 22:12:53,456 [wrapper] ==== wrapper stderr END ====
[2025-11-25 17:12:53]  *** Error codes and diagnostics ***
[2025-11-25 17:12:53]     "exeErrorCode": 0,
[2025-11-25 17:12:53]     "exeErrorDiag": "",
[2025-11-25 17:12:53]     "pilotErrorCode": 0,
[2025-11-25 17:12:53]     "pilotErrorDiag": "",
[2025-11-25 17:12:53]  *** Listing of results directory ***
[2025-11-25 17:12:53] total 1333232
[2025-11-25 17:12:53] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 16:52 queuedata.json
[2025-11-25 17:12:53] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 16:52 pilot3.tar.gz
[2025-11-25 17:12:53] -rwx------. 1 boincer umatlas     36292 Nov 22 16:56 runpilot2-wrapper.sh
[2025-11-25 17:12:53] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 17:12:53] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:04 run_atlas
[2025-11-25 17:12:53] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:04 job.xml
[2025-11-25 17:12:53] -rw-r--r--. 2 boincer umatlas 409101552 Nov 25 00:04 EVNT.47483658._001119.pool.root.1
[2025-11-25 17:12:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:04 start_atlas.sh
[2025-11-25 17:12:53] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:04 shared
[2025-11-25 17:12:53] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:04 input.tar.gz
[2025-11-25 17:12:53] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:04 boinc_lockfile
[2025-11-25 17:12:53] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 00:05 pandaJob.out
[2025-11-25 17:12:53] -rw-------. 1 boincer umatlas        57 Nov 25 00:05 setup.sh.local
[2025-11-25 17:12:53] -rw-------. 1 boincer umatlas    991801 Nov 25 00:05 agis_schedconf.cvmfs.json
[2025-11-25 17:12:53] drwx------. 5 boincer umatlas      4096 Nov 25 00:05 pilot3
[2025-11-25 17:12:53] -rw-r--r--. 1 boincer umatlas       532 Nov 25 17:00 boinc_task_state.xml
[2025-11-25 17:12:53] -rw-------. 1 boincer umatlas 931412052 Nov 25 17:11 HITS.47556149._001055.pool.root.1
[2025-11-25 17:12:53] -rw-r--r--. 1 boincer umatlas      6661 Nov 25 17:11 init_data.xml
[2025-11-25 17:12:53] -rw-------. 1 boincer umatlas        95 Nov 25 17:11 pilot_heartbeat.json
[2025-11-25 17:12:53] -rw-------. 1 boincer umatlas      1058 Nov 25 17:12 memory_monitor_summary.json
[2025-11-25 17:12:53] -rw-------. 1 boincer umatlas   1516240 Nov 25 17:12 agis_ddmendpoints.agis.ALL.json
[2025-11-25 17:12:53] -rw-------. 1 boincer umatlas   2290451 Nov 25 17:12 log.47556149._001055.job.log.tgz.1
[2025-11-25 17:12:53] -rw-------. 1 boincer umatlas      8616 Nov 25 17:12 heartbeat.json
[2025-11-25 17:12:53] -rw-------. 1 boincer umatlas       939 Nov 25 17:12 pilotlog.txt
[2025-11-25 17:12:53] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 17:12 boinc_mmap_file
[2025-11-25 17:12:53] -rw-r--r--. 1 boincer umatlas        29 Nov 25 17:12 wrapper_checkpoint.txt
[2025-11-25 17:12:53] -rw-------. 1 boincer umatlas   8108621 Nov 25 17:12 log.47556149._001055.job.log.1
[2025-11-25 17:12:53] -rw-------. 1 boincer umatlas       353 Nov 25 17:12 output.list
[2025-11-25 17:12:53] -rw-r--r--. 1 boincer umatlas       620 Nov 25 17:12 runtime_log
[2025-11-25 17:12:53] -rw-------. 1 boincer umatlas  10414080 Nov 25 17:12 result.tar.gz
[2025-11-25 17:12:53] -rw-r--r--. 1 boincer umatlas      9333 Nov 25 17:12 runtime_log.err
[2025-11-25 17:12:53] -rw-------. 1 boincer umatlas       658 Nov 25 17:12 rPMMDmnlAh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5JIKDmkGeWim.diag
[2025-11-25 17:12:53] -rw-r--r--. 1 boincer umatlas     21332 Nov 25 17:12 stderr.txt
[2025-11-25 17:12:53] HITS file was successfully produced:
[2025-11-25 17:12:53] -rw-------. 1 boincer umatlas 931412052 Nov 25 17:11 shared/HITS.pool.root.1
[2025-11-25 17:12:53]  *** Contents of shared directory: ***
[2025-11-25 17:12:53] total 1319876
[2025-11-25 17:12:53] -rw-r--r--. 2 boincer umatlas 409101552 Nov 25 00:04 ATLAS.root_0
[2025-11-25 17:12:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:04 start_atlas.sh
[2025-11-25 17:12:53] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:04 input.tar.gz
[2025-11-25 17:12:53] -rw-------. 1 boincer umatlas 931412052 Nov 25 17:11 HITS.pool.root.1
[2025-11-25 17:12:53] -rw-------. 1 boincer umatlas  10414080 Nov 25 17:12 result.tar.gz
17:12:55 (2346553): run_atlas exited; CPU time 304068.043145
17:12:55 (2346553): called boinc_finish(0)

</stderr_txt>
]]>

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