Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:58:10 (1626324): wrapper (7.7.26015): starting
23:58:10 (1626324): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 23:58:10] Arguments: --nthreads 3
[2025-11-26 23:58:10] Threads: 3
[2025-11-26 23:58:10] Checking for CVMFS
[2025-11-26 23:58:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:58:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:58:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:58:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:58:10] 2.9.2.0 46827 11912 92204 153337 1 81 34601463 36864000 0 130560 0 4414790 99.935 591337 4125 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 23:58:10] CVMFS is ok
[2025-11-26 23:58:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 23:58:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 23:58:10] Further information can be found at the LHC@home message board.
[2025-11-26 23:58:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:58:10] Checking for apptainer binary...
[2025-11-26 23:58:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:58:10] Running /usr/bin/apptainer --version
[2025-11-26 23:58:10] apptainer version 1.4.1-1.1
[2025-11-26 23:58:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:58:10] magicA252
[2025-11-26 23:58:10] apptainer works
[2025-11-26 23:58:10] Set ATHENA_PROC_NUMBER=3
[2025-11-26 23:58:10] Set ATHENA_CORE_NUMBER=3
[2025-11-26 23:58:10] Starting ATLAS job with PandaID=6895369101
[2025-11-26 23:58:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 08:03:58]  *** The last 200 lines of the pilot log: ***
[2025-11-27 08:03:58] 2025-11-27 07:02:56,338 | INFO     | collected zombie processes
[2025-11-27 08:03:58] 2025-11-27 07:02:56,338 | INFO     | will attempt to kill all subprocesses of pid=1636511
[2025-11-27 08:03:58] 2025-11-27 07:02:56,379 | INFO     | process IDs to be killed: [1636511] (in reverse order)
[2025-11-27 08:03:58] 2025-11-27 07:02:56,405 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 08:03:58] 2025-11-27 07:02:56,405 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 08:03:58] 2025-11-27 07:02:56,407 | INFO     | did not find any defunct processes belonging to 1636511
[2025-11-27 08:03:58] 2025-11-27 07:02:56,408 | INFO     | did not find any defunct processes belonging to 1636511
[2025-11-27 08:03:58] 2025-11-27 07:02:56,408 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 08:03:58] 2025-11-27 07:02:56,408 | INFO     | ready for new job
[2025-11-27 08:03:58] 2025-11-27 07:02:56,408 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 08:03:58] 2025-11-27 07:02:56,409 | INFO     | ***************************************
[2025-11-27 08:03:58] 2025-11-27 07:02:56,409 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 08:03:58] 2025-11-27 07:02:56,409 | INFO     | ***************************************
[2025-11-27 08:03:58] 2025-11-27 07:02:56,410 | INFO     | 
[2025-11-27 08:03:58] 2025-11-27 07:02:56,410 | INFO     | architecture information:
[2025-11-27 08:03:58] 2025-11-27 07:02:56,410 | INFO     | executing command: cat /etc/os-release
[2025-11-27 08:03:58] 2025-11-27 07:02:56,419 | INFO     | cat /etc/os-release:
[2025-11-27 08:03:58] NAME="CentOS Linux"
[2025-11-27 08:03:58] VERSION="7 (Core)"
[2025-11-27 08:03:58] ID="centos"
[2025-11-27 08:03:58] ID_LIKE="rhel fedora"
[2025-11-27 08:03:58] VERSION_ID="7"
[2025-11-27 08:03:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 08:03:58] ANSI_COLOR="0;31"
[2025-11-27 08:03:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 08:03:58] HOME_URL="https://www.centos.org/"
[2025-11-27 08:03:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 08:03:58] 
[2025-11-27 08:03:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 08:03:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 08:03:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 08:03:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 08:03:58] 
[2025-11-27 08:03:58] 2025-11-27 07:02:56,419 | INFO     | ***************************************
[2025-11-27 08:03:58] 2025-11-27 07:02:56,922 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 08:03:58] 2025-11-27 07:02:56,936 | INFO     | sufficient remaining disk space (366913519616 B)
[2025-11-27 08:03:58] 2025-11-27 07:02:56,936 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 08:03:58] 2025-11-27 07:02:56,936 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 08:03:58] 2025-11-27 07:02:56,936 | INFO     | update_server=False
[2025-11-27 08:03:58] 2025-11-27 07:02:56,936 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 08:03:58] 2025-11-27 07:02:56,936 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:03:58] 2025-11-27 07:02:57,213 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 08:03:58] 2025-11-27 07:02:57,214 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 08:03:58] 2025-11-27 07:02:57,214 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 08:03:58] 2025-11-27 07:02:57,214 | INFO     | will abort loop
[2025-11-27 08:03:58] 2025-11-27 07:02:57,429 | INFO     | all data control threads have been joined
[2025-11-27 08:03:58] 2025-11-27 07:02:57,634 | INFO     | all payload control threads have been joined
[2025-11-27 08:03:58] 2025-11-27 07:02:57,942 | INFO     | [job] retrieve thread has finished
[2025-11-27 08:03:58] 2025-11-27 07:02:57,942 | INFO     | [job] queue monitor thread has finished
[2025-11-27 08:03:58] 2025-11-27 07:02:58,127 | INFO     | [payload] failed_post thread has finished
[2025-11-27 08:03:58] 2025-11-27 07:02:58,173 | INFO     | all job control threads have been joined
[2025-11-27 08:03:58] 2025-11-27 07:02:58,218 | INFO     | [job] job monitor thread has finished
[2025-11-27 08:03:58] 2025-11-27 07:02:58,334 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 08:03:58] 2025-11-27 07:02:58,435 | INFO     | [data] control thread has finished
[2025-11-27 08:03:58] 2025-11-27 07:02:58,552 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 08:03:58] 2025-11-27 07:02:58,640 | INFO     | [payload] control thread has finished
[2025-11-27 08:03:58] 2025-11-27 07:02:58,654 | INFO     | [payload] validate_post thread has finished
[2025-11-27 08:03:58] 2025-11-27 07:02:59,044 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 08:03:58] 2025-11-27 07:02:59,179 | INFO     | [job] control thread has finished
[2025-11-27 08:03:58] 2025-11-27 07:02:59,189 | INFO     | [data] copytool_in thread has finished
[2025-11-27 08:03:58] 2025-11-27 07:02:59,225 | INFO     | [job] validate thread has finished
[2025-11-27 08:03:58] 2025-11-27 07:02:59,277 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 08:03:58] 2025-11-27 07:02:59,290 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 08:03:58] 2025-11-27 07:03:00,287 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 08:03:58] 2025-11-27 07:03:00,340 | INFO     | [data] copytool_out thread has finished
[2025-11-27 08:03:58] 2025-11-27 07:03:04,290 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 08:03:58] 2025-11-27 07:03:27,793 | INFO     | PID=1630056 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 08:03:58] 2025-11-27 07:03:27,793 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 08:03:58] 2025-11-27 07:03:27,793 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 08:03:58] 2025-11-27 07:03:27,793 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 08:03:58] 2025-11-27 07:03:51,595 | INFO     | [monitor] cgroup control has ended
[2025-11-27 08:03:58] 2025-11-27 07:03:53,151 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140697025345344)>', '<ExcThread(monitor, started 140696526767872)>']
[2025-11-27 08:03:58] 2025-11-27 07:03:53,904 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 08:03:58] 2025-11-27 07:03:53,905 | INFO     | [monitor] control thread has ended
[2025-11-27 08:03:58] 2025-11-27 07:03:58,154 | INFO     | all workflow threads have been joined
[2025-11-27 08:03:58] 2025-11-27 07:03:58,154 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 08:03:58] 2025-11-27 07:03:58,154 | INFO     | traces error code: 0
[2025-11-27 08:03:58] 2025-11-27 07:03:58,155 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 08:03:58] 2025-11-27 07:03:58,206 [wrapper] ==== pilot stdout END ====
[2025-11-27 08:03:58] 2025-11-27 07:03:58,208 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 08:03:58] 2025-11-27 07:03:58,211 [wrapper] pilotpid: 1630056
[2025-11-27 08:03:58] 2025-11-27 07:03:58,213 [wrapper] Pilot exit status: 0
[2025-11-27 08:03:58] 2025-11-27 07:03:58,221 [wrapper] pandaids: 6895369101
[2025-11-27 08:03:58] 2025-11-27 07:03:58,239 [wrapper] cleanup supervisor_pilot 1686510 1630057
[2025-11-27 08:03:58] 2025-11-27 07:03:58,242 [wrapper] Test setup, not cleaning
[2025-11-27 08:03:58] 2025-11-27 07:03:58,244 [wrapper] apfmon messages muted
[2025-11-27 08:03:58] 2025-11-27 07:03:58,247 [wrapper] ==== wrapper stdout END ====
[2025-11-27 08:03:58] 2025-11-27 07:03:58,249 [wrapper] ==== wrapper stderr END ====
[2025-11-27 08:03:58]  *** Error codes and diagnostics ***
[2025-11-27 08:03:58]     "exeErrorCode": 0,
[2025-11-27 08:03:58]     "exeErrorDiag": "",
[2025-11-27 08:03:58]     "pilotErrorCode": 0,
[2025-11-27 08:03:58]     "pilotErrorDiag": "",
[2025-11-27 08:03:58]  *** Listing of results directory ***
[2025-11-27 08:03:58] total 1325116
[2025-11-27 08:03:58] -rw-r--r-- 1 boinc boinc    576529 Nov 23 20:32 pilot3.tar.gz
[2025-11-27 08:03:58] -rwx------ 1 boinc boinc     36292 Nov 23 21:00 runpilot2-wrapper.sh
[2025-11-27 08:03:58] -rw-r--r-- 1 boinc boinc      5112 Nov 23 21:00 queuedata.json
[2025-11-27 08:03:58] -rw-r--r-- 1 boinc boinc       100 Nov 26 23:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 08:03:58] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 23:58 run_atlas
[2025-11-27 08:03:58] -rw-r--r-- 1 boinc boinc       105 Nov 26 23:58 job.xml
[2025-11-27 08:03:58] -rw-r--r-- 2 boinc boinc 410124806 Nov 26 23:58 EVNT.47483658._000879.pool.root.1
[2025-11-27 08:03:58] drwxrwx--x 2 boinc boinc      4096 Nov 26 23:58 shared
[2025-11-27 08:03:58] -rw-r--r-- 2 boinc boinc    590100 Nov 26 23:58 input.tar.gz
[2025-11-27 08:03:58] -rw-r--r-- 2 boinc boinc     15847 Nov 26 23:58 start_atlas.sh
[2025-11-27 08:03:58] -rw-r--r-- 1 boinc boinc         0 Nov 26 23:58 boinc_setup_complete
[2025-11-27 08:03:58] -rw-r--r-- 1 boinc boinc      6449 Nov 26 23:58 init_data.xml
[2025-11-27 08:03:58] -rw-r--r-- 1 boinc boinc         0 Nov 26 23:58 boinc_lockfile
[2025-11-27 08:03:58] -rw-r--r-- 1 boinc boinc      2786 Nov 26 23:58 pandaJob.out
[2025-11-27 08:03:58] -rw------- 1 boinc boinc    991546 Nov 26 23:58 agis_schedconf.cvmfs.json
[2025-11-27 08:03:58] drwx------ 5 boinc boinc      4096 Nov 26 23:58 pilot3
[2025-11-27 08:03:58] -rw-r--r-- 1 boinc boinc       531 Nov 27 07:58 boinc_task_state.xml
[2025-11-27 08:03:58] -rw------- 1 boinc boinc 932333177 Nov 27 08:02 HITS.47556137._008659.pool.root.1
[2025-11-27 08:03:58] -rw------- 1 boinc boinc        95 Nov 27 08:02 pilot_heartbeat.json
[2025-11-27 08:03:58] -rw------- 1 boinc boinc      1024 Nov 27 08:02 memory_monitor_summary.json
[2025-11-27 08:03:58] -rw------- 1 boinc boinc   1516240 Nov 27 08:02 agis_ddmendpoints.agis.ALL.json
[2025-11-27 08:03:58] -rw------- 1 boinc boinc   1176685 Nov 27 08:02 log.47556137._008659.job.log.tgz.1
[2025-11-27 08:03:58] -rw------- 1 boinc boinc      8563 Nov 27 08:02 heartbeat.json
[2025-11-27 08:03:58] -rw-r--r-- 1 boinc boinc      8192 Nov 27 08:03 boinc_mmap_file
[2025-11-27 08:03:58] -rw-r--r-- 1 boinc boinc        28 Nov 27 08:03 wrapper_checkpoint.txt
[2025-11-27 08:03:58] -rw------- 1 boinc boinc      4938 Nov 27 08:03 pilotlog.txt
[2025-11-27 08:03:58] -rw------- 1 boinc boinc   4096264 Nov 27 08:03 log.47556137._008659.job.log.1
[2025-11-27 08:03:58] -rw------- 1 boinc boinc       353 Nov 27 08:03 output.list
[2025-11-27 08:03:58] -rw-r--r-- 1 boinc boinc       620 Nov 27 08:03 runtime_log
[2025-11-27 08:03:58] -rw------- 1 boinc boinc   5294080 Nov 27 08:03 result.tar.gz
[2025-11-27 08:03:58] -rw-r--r-- 1 boinc boinc      8913 Nov 27 08:03 runtime_log.err
[2025-11-27 08:03:58] -rw------- 1 boinc boinc       668 Nov 27 08:03 P96MDmbRVh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYALKDmYLL0mm.diag
[2025-11-27 08:03:58] -rw-r--r-- 1 boinc boinc     10737 Nov 27 08:03 stderr.txt
[2025-11-27 08:03:58] HITS file was successfully produced:
[2025-11-27 08:03:58] -rw------- 1 boinc boinc 932333177 Nov 27 08:02 shared/HITS.pool.root.1
[2025-11-27 08:03:58]  *** Contents of shared directory: ***
[2025-11-27 08:03:58] total 1316776
[2025-11-27 08:03:58] -rw-r--r-- 2 boinc boinc 410124806 Nov 26 23:58 ATLAS.root_0
[2025-11-27 08:03:58] -rw-r--r-- 2 boinc boinc    590100 Nov 26 23:58 input.tar.gz
[2025-11-27 08:03:58] -rw-r--r-- 2 boinc boinc     15847 Nov 26 23:58 start_atlas.sh
[2025-11-27 08:03:58] -rw------- 1 boinc boinc 932333177 Nov 27 08:02 HITS.pool.root.1
[2025-11-27 08:03:58] -rw------- 1 boinc boinc   5294080 Nov 27 08:03 result.tar.gz
08:04:00 (1626324): run_atlas exited; CPU time 85714.624742
08:04:00 (1626324): called boinc_finish(0)

</stderr_txt>
]]>

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