Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:38:23 (2112532): wrapper (7.7.26015): starting
09:38:23 (2112532): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 09:38:23] Arguments: --nthreads 8
[2025-11-24 09:38:23] Threads: 8
[2025-11-24 09:38:23] Checking for CVMFS
[2025-11-24 09:38:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 09:38:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 09:38:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 09:38:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 09:38:24] 2.13.3.0 10978 27254 355616 153248 1 327 38208235 40960000 13084 16776704 0 62068513 99.510 81569158 38871 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 09:38:24] CVMFS is ok
[2025-11-24 09:38:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 09:38:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 09:38:24] Further information can be found at the LHC@home message board.
[2025-11-24 09:38:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 09:38:24] Checking for apptainer binary...
[2025-11-24 09:38:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 09:38:24] Running /usr/bin/apptainer --version
[2025-11-24 09:38:24] apptainer version 1.4.4-1.el9
[2025-11-24 09:38:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 09:38:25] c6-8-12-1.aglt2.org
[2025-11-24 09:38:25] apptainer works
[2025-11-24 09:38:25] Set ATHENA_PROC_NUMBER=8
[2025-11-24 09:38:25] Set ATHENA_CORE_NUMBER=8
[2025-11-24 09:38:25] Starting ATLAS job with PandaID=6895356783
[2025-11-24 09:38:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 20:50:58]  *** The last 200 lines of the pilot log: ***
[2025-11-25 20:50:58] 2025-11-26 01:50:07,928 | INFO     | time since job start (126679s) is within the limit (172800.0s)
[2025-11-25 20:50:58] 2025-11-26 01:50:09,607 | INFO     | monitor loop #7596: job 0:6895356783 is in state 'finished'
[2025-11-25 20:50:58] 2025-11-26 01:50:09,615 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:50:58] 2025-11-26 01:50:09,937 | INFO     | time since job start (126681s) is within the limit (172800.0s)
[2025-11-25 20:50:58] 2025-11-26 01:50:11,978 | INFO     | time since job start (126683s) is within the limit (172800.0s)
[2025-11-25 20:50:58] 2025-11-26 01:50:12,142 | INFO     | monitor loop #7597: job 0:6895356783 is in state 'finished'
[2025-11-25 20:50:58] 2025-11-26 01:50:12,142 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:50:58] 2025-11-26 01:50:13,985 | INFO     | time since job start (126685s) is within the limit (172800.0s)
[2025-11-25 20:50:58] 2025-11-26 01:50:14,677 | INFO     | monitor loop #7598: job 0:6895356783 is in state 'finished'
[2025-11-25 20:50:58] 2025-11-26 01:50:14,677 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:50:58] 2025-11-26 01:50:16,030 | INFO     | time since job start (126688s) is within the limit (172800.0s)
[2025-11-25 20:50:58] 2025-11-26 01:50:17,192 | INFO     | monitor loop #7599: job 0:6895356783 is in state 'finished'
[2025-11-25 20:50:58] 2025-11-26 01:50:17,192 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:50:58] 2025-11-26 01:50:18,037 | INFO     | time since job start (126690s) is within the limit (172800.0s)
[2025-11-25 20:50:58] 2025-11-26 01:50:19,376 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 20:50:58] 2025-11-26 01:50:19,396 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3142.5070357142863
[2025-11-25 20:50:58] 2025-11-26 01:50:19,416 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895356783/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 20:50:58] 2025-11-26 01:50:19,416 | INFO     | extracted standard info from prmon json
[2025-11-25 20:50:58] 2025-11-26 01:50:19,417 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 20:50:58] 2025-11-26 01:50:19,417 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 20:50:58] 2025-11-26 01:50:19,457 | INFO     | fitting pss+swap vs Time
[2025-11-25 20:50:58] 2025-11-26 01:50:19,459 | INFO     | sum of square deviations: 2774317491614.272
[2025-11-25 20:50:58] 2025-11-26 01:50:19,609 | INFO     | sum of deviations: 5991192166922.917
[2025-11-25 20:50:58] 2025-11-26 01:50:19,609 | INFO     | mean x: 1764058465.290944
[2025-11-25 20:50:58] 2025-11-26 01:50:19,609 | INFO     | mean y: 2892445.768304432
[2025-11-25 20:50:58] 2025-11-26 01:50:19,609 | INFO     | intersect: -3806625856.00889
[2025-11-25 20:50:58] 2025-11-26 01:50:19,612 | INFO     | chi2: 19.860373652506166
[2025-11-25 20:50:58] 2025-11-26 01:50:19,615 | INFO     | sum of square deviations: 2754322035900.437
[2025-11-25 20:50:58] 2025-11-26 01:50:19,693 | INFO     | sum of deviations: 6708312741552.59
[2025-11-25 20:50:58] 2025-11-26 01:50:19,693 | INFO     | mean x: 1764058312.799131
[2025-11-25 20:50:58] 2025-11-26 01:50:19,693 | INFO     | mean y: 2897914.107194592
[2025-11-25 20:50:58] 2025-11-26 01:50:19,694 | INFO     | intersect: -4293569493.242824
[2025-11-25 20:50:58] 2025-11-26 01:50:19,696 | INFO     | chi2: 16.426432660524387
[2025-11-25 20:50:58] 2025-11-26 01:50:19,696 | INFO     | current chi2=16.426432660524387 (change=17.29041483340094 %)
[2025-11-25 20:50:58] 2025-11-26 01:50:19,696 | INFO     | right removable region: 2070
[2025-11-25 20:50:58] 2025-11-26 01:50:19,699 | INFO     | sum of square deviations: 2754317488337.2373
[2025-11-25 20:50:58] 2025-11-26 01:50:19,711 | INFO     | monitor loop #7600: job 0:6895356783 is in state 'finished'
[2025-11-25 20:50:58] 2025-11-26 01:50:19,711 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:50:58] 2025-11-26 01:50:19,835 | INFO     | sum of deviations: 5364801261178.874
[2025-11-25 20:50:58] 2025-11-26 01:50:19,836 | INFO     | mean x: 1764058617.8000965
[2025-11-25 20:50:58] 2025-11-26 01:50:19,836 | INFO     | mean y: 2897220.567358764
[2025-11-25 20:50:58] 2025-11-26 01:50:19,836 | INFO     | intersect: -3433098788.476851
[2025-11-25 20:50:58] 2025-11-26 01:50:19,842 | INFO     | chi2: 17.520371689217757
[2025-11-25 20:50:58] 2025-11-26 01:50:19,842 | INFO     | current chi2=17.520371689217757 (change=11.782265551651014 %)
[2025-11-25 20:50:58] 2025-11-26 01:50:19,843 | INFO     | left removable region: 10
[2025-11-25 20:50:58] 2025-11-26 01:50:19,846 | INFO     | sum of square deviations: 2710662364742.0054
[2025-11-25 20:50:58] 2025-11-26 01:50:20,001 | INFO     | sum of deviations: 6106024800414.653
[2025-11-25 20:50:58] 2025-11-26 01:50:20,001 | INFO     | mean x: 1764058587.3169904
[2025-11-25 20:50:58] 2025-11-26 01:50:20,002 | INFO     | mean y: 2904896.7616504855
[2025-11-25 20:50:58] 2025-11-26 01:50:20,002 | INFO     | intersect: -3970804859.070363
[2025-11-25 20:50:58] 2025-11-26 01:50:20,032 | INFO     | chi2: 13.270731747559376
[2025-11-25 20:50:58] 2025-11-26 01:50:20,032 | INFO     | current memory leak: 2.25 B/s (using 2060 data points, chi2=13.27)
[2025-11-25 20:50:58] 2025-11-26 01:50:20,034 | INFO     | could have reported an average CPU frequency of 2842 MHz (72 samples)
[2025-11-25 20:50:58] 2025-11-26 01:50:20,038 | INFO     | ..............................
[2025-11-25 20:50:58] 2025-11-26 01:50:20,038 | INFO     | . Timing measurements:
[2025-11-25 20:50:58] 2025-11-26 01:50:20,038 | INFO     | . get job = 0 s
[2025-11-25 20:50:58] 2025-11-26 01:50:20,038 | INFO     | . initial setup = 3 s
[2025-11-25 20:50:58] 2025-11-26 01:50:20,038 | INFO     | . payload setup = 12 s
[2025-11-25 20:50:58] 2025-11-26 01:50:20,038 | INFO     | . stage-in = 0 s
[2025-11-25 20:50:58] 2025-11-26 01:50:20,038 | INFO     | . payload execution = 126588 s
[2025-11-25 20:50:58] 2025-11-26 01:50:20,038 | INFO     | . stage-out = 15 s
[2025-11-25 20:50:58] 2025-11-26 01:50:20,038 | INFO     | . log creation = 2 s
[2025-11-25 20:50:58] 2025-11-26 01:50:20,038 | INFO     | ..............................
[2025-11-25 20:50:58] 2025-11-26 01:50:20,203 | INFO     | time since job start (126692s) is within the limit (172800.0s)
[2025-11-25 20:50:58] 2025-11-26 01:50:21,166 | INFO     | 
[2025-11-25 20:50:58] 2025-11-26 01:50:21,166 | INFO     | job summary report
[2025-11-25 20:50:58] 2025-11-26 01:50:21,166 | INFO     | --------------------------------------------------
[2025-11-25 20:50:58] 2025-11-26 01:50:21,166 | INFO     | PanDA job id: 6895356783
[2025-11-25 20:50:58] 2025-11-26 01:50:21,166 | INFO     | task id: 47556149
[2025-11-25 20:50:58] 2025-11-26 01:50:21,166 | INFO     | errors: (none)
[2025-11-25 20:50:58] 2025-11-26 01:50:21,166 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 20:50:58] 2025-11-26 01:50:21,166 | INFO     | pilot state: finished 
[2025-11-25 20:50:58] 2025-11-26 01:50:21,166 | INFO     | transexitcode: 0
[2025-11-25 20:50:58] 2025-11-26 01:50:21,166 | INFO     | exeerrorcode: 0
[2025-11-25 20:50:58] 2025-11-26 01:50:21,166 | INFO     | exeerrordiag: 
[2025-11-25 20:50:58] 2025-11-26 01:50:21,167 | INFO     | exitcode: 0
[2025-11-25 20:50:58] 2025-11-26 01:50:21,167 | INFO     | exitmsg: OK
[2025-11-25 20:50:58] 2025-11-26 01:50:21,167 | INFO     | cpuconsumptiontime: 246891 s
[2025-11-25 20:50:58] 2025-11-26 01:50:21,167 | INFO     | nevents: 1000
[2025-11-25 20:50:58] 2025-11-26 01:50:21,167 | INFO     | neventsw: 0
[2025-11-25 20:50:58] 2025-11-26 01:50:21,167 | INFO     | pid: 2130171
[2025-11-25 20:50:58] 2025-11-26 01:50:21,167 | INFO     | pgrp: 2130171
[2025-11-25 20:50:58] 2025-11-26 01:50:21,167 | INFO     | corecount: 8
[2025-11-25 20:50:58] 2025-11-26 01:50:21,167 | INFO     | event service: False
[2025-11-25 20:50:58] 2025-11-26 01:50:21,167 | INFO     | sizes: {0: 2284088, 1: 2284287, 8: 2284549, 12: 2284577, 126605: 2367391, 126623: 2376390, 126625: 2376574, 126673: 2376820}
[2025-11-25 20:50:58] 2025-11-26 01:50:21,167 | INFO     | --------------------------------------------------
[2025-11-25 20:50:58] 2025-11-26 01:50:21,167 | INFO     | 
[2025-11-25 20:50:58] 2025-11-26 01:50:21,167 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-25 20:50:58] 2025-11-26 01:50:21,376 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 20:50:58] 2025-11-26 01:50:21,376 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 20:50:58] 2025-11-26 01:50:21,377 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 20:50:58] 2025-11-26 01:50:21,377 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 20:50:58] 2025-11-26 01:50:21,377 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 20:50:58] 2025-11-26 01:50:21,377 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 20:50:58] 2025-11-26 01:50:21,377 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 20:50:58] 2025-11-26 01:50:21,377 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 20:50:58] 2025-11-26 01:50:21,377 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 20:50:58] 2025-11-26 01:50:21,377 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 20:50:58] 2025-11-26 01:50:21,377 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 20:50:58] 2025-11-26 01:50:21,377 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 20:50:58] 2025-11-26 01:50:21,377 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 20:50:58] 2025-11-26 01:50:21,377 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 20:50:58] 2025-11-26 01:50:21,377 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 20:50:58] 2025-11-26 01:50:21,377 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 20:50:58] 2025-11-26 01:50:21,377 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 20:50:58] 2025-11-26 01:50:21,378 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 20:50:58] 2025-11-26 01:50:21,378 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 20:50:58] 2025-11-26 01:50:21,378 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 20:50:58] 2025-11-26 01:50:21,378 | INFO     | job 6895356783 has completed (purged errors)
[2025-11-25 20:50:58] 2025-11-26 01:50:21,378 | INFO     | overall cleanup function is called
[2025-11-25 20:50:58] 2025-11-26 01:50:22,408 | INFO     | --- collectZombieJob: --- 10, [2130171]
[2025-11-25 20:50:58] 2025-11-26 01:50:22,408 | INFO     | zombie collector waiting for pid 2130171
[2025-11-25 20:50:58] 2025-11-26 01:50:22,408 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 20:50:58] 2025-11-26 01:50:22,408 | INFO     | collected zombie processes
[2025-11-25 20:50:58] 2025-11-26 01:50:22,408 | INFO     | will attempt to kill all subprocesses of pid=2130171
[2025-11-25 20:50:58] 2025-11-26 01:50:23,796 | INFO     | process IDs to be killed: [2130171] (in reverse order)
[2025-11-25 20:50:58] 2025-11-26 01:50:24,329 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 20:50:58] 2025-11-26 01:50:24,330 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 20:50:58] 2025-11-26 01:50:24,491 | INFO     | did not find any defunct processes belonging to 2130171
[2025-11-25 20:50:58] 2025-11-26 01:50:24,630 | INFO     | did not find any defunct processes belonging to 2130171
[2025-11-25 20:50:58] 2025-11-26 01:50:24,668 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 20:50:58] 2025-11-26 01:50:24,669 | INFO     | ready for new job
[2025-11-25 20:50:58] 2025-11-26 01:50:24,669 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 20:50:58] 2025-11-26 01:50:24,726 | INFO     | ***************************************
[2025-11-25 20:50:58] 2025-11-26 01:50:24,726 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 20:50:58] 2025-11-26 01:50:24,755 | INFO     | ***************************************
[2025-11-25 20:50:58] 2025-11-26 01:50:24,755 | INFO     | 
[2025-11-25 20:50:58] 2025-11-26 01:50:24,758 | INFO     | architecture information:
[2025-11-25 20:50:58] 2025-11-26 01:50:24,800 | INFO     | executing command: cat /etc/os-release
[2025-11-25 20:50:58] 2025-11-26 01:50:25,144 | INFO     | cat /etc/os-release:
[2025-11-25 20:50:58] NAME="CentOS Linux"
[2025-11-25 20:50:58] VERSION="7 (Core)"
[2025-11-25 20:50:58] ID="centos"
[2025-11-25 20:50:58] ID_LIKE="rhel fedora"
[2025-11-25 20:50:58] VERSION_ID="7"
[2025-11-25 20:50:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 20:50:58] ANSI_COLOR="0;31"
[2025-11-25 20:50:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 20:50:58] HOME_URL="https://www.centos.org/"
[2025-11-25 20:50:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 20:50:58] 
[2025-11-25 20:50:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 20:50:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 20:50:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 20:50:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 20:50:58] 
[2025-11-25 20:50:58] 2025-11-26 01:50:25,144 | INFO     | ***************************************
[2025-11-25 20:50:58] 2025-11-26 01:50:25,648 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-25 20:50:58] 2025-11-26 01:50:25,829 | INFO     | sufficient remaining disk space (51357155328 B)
[2025-11-25 20:50:58] 2025-11-26 01:50:25,829 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 20:50:58] 2025-11-26 01:50:25,829 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 20:50:58] 2025-11-26 01:50:25,829 | INFO     | update_server=False
[2025-11-25 20:50:58] 2025-11-26 01:50:25,830 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 20:50:58] 2025-11-26 01:50:25,831 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 20:50:58] 2025-11-26 01:50:25,882 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:50:58] 2025-11-26 01:50:25,882 | INFO     | aborting loop
[2025-11-25 20:50:58] 2025-11-26 01:50:25,999 | INFO     | all payload control threads have been joined
[2025-11-25 20:50:58] 2025-11-26 01:50:26,182 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:50:58] 2025-11-26 01:50:26,470 | INFO     | all data control threads have been joined
[2025-11-25 20:50:58] 2025-11-26 01:50:26,783 | INFO     | all job control threads have been joined
[2025-11-25 20:50:58] 2025-11-26 01:50:26,836 | INFO     | [job] retrieve thread has finished
[2025-11-25 20:50:58] 2025-11-26 01:50:26,861 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 20:50:58] 2025-11-26 01:50:26,890 | INFO     | [job] job monitor thread has finished
[2025-11-25 20:50:58] 2025-11-26 01:50:26,913 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 20:50:58] 2025-11-26 01:50:27,005 | INFO     | [payload] control thread has finished
[2025-11-25 20:50:58] 2025-11-26 01:50:27,172 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 20:50:58] 2025-11-26 01:50:27,188 | INFO     | [job] queue monitor thread has finished
[2025-11-25 20:50:58] 2025-11-26 01:50:27,363 | INFO     | [data] copytool_in thread has finished
[2025-11-25 20:50:58] 2025-11-26 01:50:27,370 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 20:50:58] 2025-11-26 01:50:27,476 | INFO     | [data] control thread has finished
[2025-11-25 20:50:58] 2025-11-26 01:50:27,497 | INFO     | [job] validate thread has finished
[2025-11-25 20:50:58] 2025-11-26 01:50:27,642 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 20:50:58] 2025-11-26 01:50:27,828 | INFO     | [job] control thread has finished
[2025-11-25 20:50:58] 2025-11-26 01:50:27,887 | INFO     | [payload] failed_post thread has finished
[2025-11-25 20:50:58] 2025-11-26 01:50:27,924 | INFO     | [payload] validate_post thread has finished
[2025-11-25 20:50:58] 2025-11-26 01:50:29,179 | INFO     | [data] copytool_out thread has finished
[2025-11-25 20:50:58] 2025-11-26 01:50:29,840 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 20:50:58] 2025-11-26 01:50:39,634 | INFO     | [monitor] cgroup control has ended
[2025-11-25 20:50:58] 2025-11-26 01:50:41,624 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140660520908608)>', '<ExcThread(monitor, started 140660019545856)>']
[2025-11-25 20:50:58] 2025-11-26 01:50:46,650 | INFO     | all workflow threads have been joined
[2025-11-25 20:50:58] 2025-11-26 01:50:46,650 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 20:50:58] 2025-11-26 01:50:46,650 | INFO     | traces error code: 0
[2025-11-25 20:50:58] 2025-11-26 01:50:46,651 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 20:50:58] 2025-11-26 01:50:55,954 | INFO     | PID=2118002 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 20:50:58] 2025-11-26 01:50:55,961 | INFO     | .. there are 19 such processes running
[2025-11-25 20:50:58] 2025-11-26 01:50:55,971 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 20:50:58] 2025-11-26 01:50:55,971 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 20:50:58] 2025-11-26 01:50:55,971 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 20:50:58] 2025-11-26 01:50:55,971 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 20:50:58] 2025-11-26 01:50:55,971 | INFO     | [monitor] control thread has ended
[2025-11-25 20:50:58] 2025-11-26 01:50:57,462 [wrapper] ==== pilot stdout END ====
[2025-11-25 20:50:58] 2025-11-26 01:50:57,486 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 20:50:58] 2025-11-26 01:50:57,508 [wrapper] pilotpid: 2118002
[2025-11-25 20:50:58] 2025-11-26 01:50:57,526 [wrapper] Pilot exit status: 0
[2025-11-25 20:50:58] 2025-11-26 01:50:57,601 [wrapper] pandaids: 6895356783
[2025-11-25 20:50:58] 2025-11-26 01:50:57,771 [wrapper] cleanup supervisor_pilot 3021051 2118003
[2025-11-25 20:50:58] 2025-11-26 01:50:57,787 [wrapper] Test setup, not cleaning
[2025-11-25 20:50:58] 2025-11-26 01:50:57,820 [wrapper] apfmon messages muted
[2025-11-25 20:50:58] 2025-11-26 01:50:57,836 [wrapper] ==== wrapper stdout END ====
[2025-11-25 20:50:58] 2025-11-26 01:50:57,857 [wrapper] ==== wrapper stderr END ====
[2025-11-25 20:50:58]  *** Error codes and diagnostics ***
[2025-11-25 20:50:58]     "exeErrorCode": 0,
[2025-11-25 20:50:58]     "exeErrorDiag": "",
[2025-11-25 20:50:58]     "pilotErrorCode": 0,
[2025-11-25 20:50:58]     "pilotErrorDiag": "",
[2025-11-25 20:50:58]  *** Listing of results directory ***
[2025-11-25 20:50:58] total 1333784
[2025-11-25 20:50:58] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 06:12 pilot3.tar.gz
[2025-11-25 20:50:58] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 06:21 queuedata.json
[2025-11-25 20:50:58] -rwx------. 1 boincer umatlas     36292 Nov 23 06:22 runpilot2-wrapper.sh
[2025-11-25 20:50:58] -rw-r--r--. 1 boincer umatlas       100 Nov 24 09:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 20:50:58] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 09:38 run_atlas
[2025-11-25 20:50:58] -rw-r--r--. 1 boincer umatlas       105 Nov 24 09:38 job.xml
[2025-11-25 20:50:58] -rw-r--r--. 2 boincer umatlas 408692662 Nov 24 09:38 EVNT.47483658._001156.pool.root.1
[2025-11-25 20:50:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 09:38 start_atlas.sh
[2025-11-25 20:50:58] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 09:38 shared
[2025-11-25 20:50:58] -rw-r--r--. 2 boincer umatlas    590105 Nov 24 09:38 input.tar.gz
[2025-11-25 20:50:58] -rw-r--r--. 1 boincer umatlas         0 Nov 24 09:38 boinc_lockfile
[2025-11-25 20:50:58] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 09:38 pandaJob.out
[2025-11-25 20:50:58] -rw-------. 1 boincer umatlas        57 Nov 24 09:38 setup.sh.local
[2025-11-25 20:50:58] -rw-------. 1 boincer umatlas    988283 Nov 24 09:38 agis_schedconf.cvmfs.json
[2025-11-25 20:50:58] drwx------. 5 boincer umatlas      4096 Nov 24 09:38 pilot3
[2025-11-25 20:50:58] -rw-r--r--. 1 boincer umatlas       534 Nov 25 20:22 boinc_task_state.xml
[2025-11-25 20:50:58] -rw-------. 1 boincer umatlas 915630628 Nov 25 20:48 HITS.47556149._001429.pool.root.1
[2025-11-25 20:50:58] -rw-r--r--. 1 boincer umatlas      6845 Nov 25 20:48 init_data.xml
[2025-11-25 20:50:58] -rw-------. 1 boincer umatlas      1059 Nov 25 20:49 memory_monitor_summary.json
[2025-11-25 20:50:58] -rw-------. 1 boincer umatlas   1516240 Nov 25 20:49 agis_ddmendpoints.agis.ALL.json
[2025-11-25 20:50:58] -rw-------. 1 boincer umatlas   2893229 Nov 25 20:49 log.47556149._001429.job.log.tgz.1
[2025-11-25 20:50:58] -rw-------. 1 boincer umatlas        95 Nov 25 20:50 pilot_heartbeat.json
[2025-11-25 20:50:58] -rw-------. 1 boincer umatlas      8623 Nov 25 20:50 heartbeat.json
[2025-11-25 20:50:58] -rw-------. 1 boincer umatlas       823 Nov 25 20:50 pilotlog.txt
[2025-11-25 20:50:58] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 20:50 boinc_mmap_file
[2025-11-25 20:50:58] -rw-r--r--. 1 boincer umatlas        30 Nov 25 20:50 wrapper_checkpoint.txt
[2025-11-25 20:50:58] -rw-------. 1 boincer umatlas  15885046 Nov 25 20:50 log.47556149._001429.job.log.1
[2025-11-25 20:50:58] -rw-------. 1 boincer umatlas       353 Nov 25 20:50 output.list
[2025-11-25 20:50:58] -rw-r--r--. 1 boincer umatlas       620 Nov 25 20:50 runtime_log
[2025-11-25 20:50:58] -rw-------. 1 boincer umatlas  18800640 Nov 25 20:50 result.tar.gz
[2025-11-25 20:50:58] -rw-------. 1 boincer umatlas       664 Nov 25 20:50 wz6MDm2LNh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmpKKDmR0sIIo.diag
[2025-11-25 20:50:58] -rw-r--r--. 1 boincer umatlas      9349 Nov 25 20:50 runtime_log.err
[2025-11-25 20:50:58] -rw-r--r--. 1 boincer umatlas     21785 Nov 25 20:50 stderr.txt
[2025-11-25 20:50:58] HITS file was successfully produced:
[2025-11-25 20:50:58] -rw-------. 1 boincer umatlas 915630628 Nov 25 20:48 shared/HITS.pool.root.1
[2025-11-25 20:50:58]  *** Contents of shared directory: ***
[2025-11-25 20:50:58] total 1312248
[2025-11-25 20:50:58] -rw-r--r--. 2 boincer umatlas 408692662 Nov 24 09:38 ATLAS.root_0
[2025-11-25 20:50:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 09:38 start_atlas.sh
[2025-11-25 20:50:58] -rw-r--r--. 2 boincer umatlas    590105 Nov 24 09:38 input.tar.gz
[2025-11-25 20:50:58] -rw-------. 1 boincer umatlas 915630628 Nov 25 20:48 HITS.pool.root.1
[2025-11-25 20:50:58] -rw-------. 1 boincer umatlas  18800640 Nov 25 20:50 result.tar.gz
20:51:00 (2112532): run_atlas exited; CPU time 249655.518887
20:51:00 (2112532): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN