Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:53 (1868500): wrapper (7.7.26015): starting
00:03:53 (1868500): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:03:53] Arguments: --nthreads 12
[2025-11-25 00:03:53] Threads: 12
[2025-11-25 00:03:53] Checking for CVMFS
[2025-11-25 00:03:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:03:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:03:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:03:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:03:55] 2.13.2.0 6384 32553 289364 153270 2 64 38427477 40960000 11612 16776704 0 33996275 99.779 18499511 35679 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:03:55] CVMFS is ok
[2025-11-25 00:03:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:03:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:03:55] Further information can be found at the LHC@home message board.
[2025-11-25 00:03:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:03:55] Checking for apptainer binary...
[2025-11-25 00:03:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:03:55] Running /usr/bin/apptainer --version
[2025-11-25 00:03:55] apptainer version 1.4.4-1.el9
[2025-11-25 00:03:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:03:56] c-210-33-2.aglt2.org
[2025-11-25 00:03:56] apptainer works
[2025-11-25 00:03:56] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:03:56] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:03:56] Starting ATLAS job with PandaID=6895356962
[2025-11-25 00:03:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 11:57:22]  *** The last 200 lines of the pilot log: ***
[2025-11-26 11:57:22] 2025-11-26 16:56:04,866 | INFO     | time since job start (129057s) is within the limit (172800.0s)
[2025-11-26 11:57:22] 2025-11-26 16:56:05,277 | INFO     | monitor loop #7428: job 0:6895356962 is in state 'finished'
[2025-11-26 11:57:22] 2025-11-26 16:56:05,277 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:57:22] 2025-11-26 16:56:06,873 | INFO     | time since job start (129059s) is within the limit (172800.0s)
[2025-11-26 11:57:22] 2025-11-26 16:56:07,782 | INFO     | monitor loop #7429: job 0:6895356962 is in state 'finished'
[2025-11-26 11:57:22] 2025-11-26 16:56:07,782 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:57:22] 2025-11-26 16:56:08,927 | INFO     | time since job start (129061s) is within the limit (172800.0s)
[2025-11-26 11:57:22] 2025-11-26 16:56:10,289 | INFO     | monitor loop #7430: job 0:6895356962 is in state 'finished'
[2025-11-26 11:57:22] 2025-11-26 16:56:10,289 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:57:22] 2025-11-26 16:56:10,934 | INFO     | time since job start (129063s) is within the limit (172800.0s)
[2025-11-26 11:57:22] 2025-11-26 16:56:12,795 | INFO     | monitor loop #7431: job 0:6895356962 is in state 'finished'
[2025-11-26 11:57:22] 2025-11-26 16:56:12,796 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:57:22] 2025-11-26 16:56:12,941 | INFO     | time since job start (129065s) is within the limit (172800.0s)
[2025-11-26 11:57:22] 2025-11-26 16:56:14,965 | INFO     | time since job start (129067s) is within the limit (172800.0s)
[2025-11-26 11:57:22] 2025-11-26 16:56:15,171 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 11:57:22] 2025-11-26 16:56:15,185 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2817.0235000000002
[2025-11-26 11:57:22] 2025-11-26 16:56:15,222 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895356962/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 11:57:22] 2025-11-26 16:56:15,223 | INFO     | extracted standard info from prmon json
[2025-11-26 11:57:22] 2025-11-26 16:56:15,223 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 11:57:22] 2025-11-26 16:56:15,223 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 11:57:22] 2025-11-26 16:56:15,308 | INFO     | monitor loop #7432: job 0:6895356962 is in state 'finished'
[2025-11-26 11:57:22] 2025-11-26 16:56:15,308 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:57:22] 2025-11-26 16:56:15,355 | INFO     | fitting pss+swap vs Time
[2025-11-26 11:57:22] 2025-11-26 16:56:15,369 | INFO     | sum of square deviations: 2925534979887.182
[2025-11-26 11:57:22] 2025-11-26 16:56:15,624 | INFO     | sum of deviations: 7230186674857.018
[2025-11-26 11:57:22] 2025-11-26 16:56:15,625 | INFO     | mean x: 1764111657.5380974
[2025-11-26 11:57:22] 2025-11-26 16:56:15,625 | INFO     | mean y: 3589826.633222906
[2025-11-26 11:57:22] 2025-11-26 16:56:15,625 | INFO     | intersect: -4356247497.815294
[2025-11-26 11:57:22] 2025-11-26 16:56:15,628 | INFO     | chi2: 24.81850095320212
[2025-11-26 11:57:22] 2025-11-26 16:56:15,638 | INFO     | sum of square deviations: 2904822055442.5063
[2025-11-26 11:57:22] 2025-11-26 16:56:15,932 | INFO     | sum of deviations: 8183900452325.148
[2025-11-26 11:57:22] 2025-11-26 16:56:15,932 | INFO     | mean x: 1764111505.055503
[2025-11-26 11:57:22] 2025-11-26 16:56:15,933 | INFO     | mean y: 3596846.7338709678
[2025-11-26 11:57:22] 2025-11-26 16:56:15,933 | INFO     | intersect: -4966522722.940225
[2025-11-26 11:57:22] 2025-11-26 16:56:15,947 | INFO     | chi2: 21.026056788610873
[2025-11-26 11:57:22] 2025-11-26 16:56:15,947 | INFO     | current chi2=21.026056788610873 (change=15.280714059814876 %)
[2025-11-26 11:57:22] 2025-11-26 16:56:15,947 | INFO     | right removable region: 2107
[2025-11-26 11:57:22] 2025-11-26 16:56:15,950 | INFO     | sum of square deviations: 2904810533090.6064
[2025-11-26 11:57:22] 2025-11-26 16:56:16,566 | INFO     | sum of deviations: 6454348749179.64
[2025-11-26 11:57:22] 2025-11-26 16:56:16,567 | INFO     | mean x: 1764111810.063093
[2025-11-26 11:57:22] 2025-11-26 16:56:16,567 | INFO     | mean y: 3595533.8524667933
[2025-11-26 11:57:22] 2025-11-26 16:56:16,585 | INFO     | intersect: -3916175730.051373
[2025-11-26 11:57:22] 2025-11-26 16:56:16,588 | INFO     | chi2: 22.453571547777944
[2025-11-26 11:57:22] 2025-11-26 16:56:16,588 | INFO     | current chi2=22.453571547777944 (change=9.528897050968132 %)
[2025-11-26 11:57:22] 2025-11-26 16:56:16,588 | INFO     | left removable region: 10
[2025-11-26 11:57:22] 2025-11-26 16:56:16,633 | INFO     | sum of square deviations: 2859576188372.429
[2025-11-26 11:57:22] 2025-11-26 16:56:17,009 | INFO     | time since job start (129070s) is within the limit (172800.0s)
[2025-11-26 11:57:22] 2025-11-26 16:56:17,231 | INFO     | sum of deviations: 7322008942112.354
[2025-11-26 11:57:22] 2025-11-26 16:56:17,231 | INFO     | mean x: 1764111779.6065807
[2025-11-26 11:57:22] 2025-11-26 16:56:17,231 | INFO     | mean y: 3605802.7010014304
[2025-11-26 11:57:22] 2025-11-26 16:56:17,231 | INFO     | intersect: -4513441960.421175
[2025-11-26 11:57:22] 2025-11-26 16:56:17,250 | INFO     | chi2: 17.866345461088468
[2025-11-26 11:57:22] 2025-11-26 16:56:17,250 | INFO     | current memory leak: 2.56 B/s (using 2097 data points, chi2=17.87)
[2025-11-26 11:57:22] 2025-11-26 16:56:17,252 | INFO     | could have reported an average CPU frequency of 2877 MHz (73 samples)
[2025-11-26 11:57:22] 2025-11-26 16:56:17,252 | INFO     | ..............................
[2025-11-26 11:57:22] 2025-11-26 16:56:17,252 | INFO     | . Timing measurements:
[2025-11-26 11:57:22] 2025-11-26 16:56:17,252 | INFO     | . get job = 0 s
[2025-11-26 11:57:22] 2025-11-26 16:56:17,252 | INFO     | . initial setup = 5 s
[2025-11-26 11:57:22] 2025-11-26 16:56:17,252 | INFO     | . payload setup = 36 s
[2025-11-26 11:57:22] 2025-11-26 16:56:17,252 | INFO     | . stage-in = 0 s
[2025-11-26 11:57:22] 2025-11-26 16:56:17,253 | INFO     | . payload execution = 128891 s
[2025-11-26 11:57:22] 2025-11-26 16:56:17,253 | INFO     | . stage-out = 20 s
[2025-11-26 11:57:22] 2025-11-26 16:56:17,253 | INFO     | . log creation = 8 s
[2025-11-26 11:57:22] 2025-11-26 16:56:17,269 | INFO     | ..............................
[2025-11-26 11:57:22] 2025-11-26 16:56:18,182 | INFO     | 
[2025-11-26 11:57:22] 2025-11-26 16:56:18,183 | INFO     | job summary report
[2025-11-26 11:57:22] 2025-11-26 16:56:18,183 | INFO     | --------------------------------------------------
[2025-11-26 11:57:22] 2025-11-26 16:56:18,183 | INFO     | PanDA job id: 6895356962
[2025-11-26 11:57:22] 2025-11-26 16:56:18,183 | INFO     | task id: 47556149
[2025-11-26 11:57:22] 2025-11-26 16:56:18,183 | INFO     | errors: (none)
[2025-11-26 11:57:22] 2025-11-26 16:56:18,183 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 11:57:22] 2025-11-26 16:56:18,183 | INFO     | pilot state: finished 
[2025-11-26 11:57:22] 2025-11-26 16:56:18,183 | INFO     | transexitcode: 0
[2025-11-26 11:57:22] 2025-11-26 16:56:18,183 | INFO     | exeerrorcode: 0
[2025-11-26 11:57:22] 2025-11-26 16:56:18,183 | INFO     | exeerrordiag: 
[2025-11-26 11:57:22] 2025-11-26 16:56:18,183 | INFO     | exitcode: 0
[2025-11-26 11:57:22] 2025-11-26 16:56:18,184 | INFO     | exitmsg: OK
[2025-11-26 11:57:22] 2025-11-26 16:56:18,184 | INFO     | cpuconsumptiontime: 237950 s
[2025-11-26 11:57:22] 2025-11-26 16:56:18,184 | INFO     | nevents: 1000
[2025-11-26 11:57:22] 2025-11-26 16:56:18,184 | INFO     | neventsw: 0
[2025-11-26 11:57:22] 2025-11-26 16:56:18,184 | INFO     | pid: 1890642
[2025-11-26 11:57:22] 2025-11-26 16:56:18,184 | INFO     | pgrp: 1890642
[2025-11-26 11:57:22] 2025-11-26 16:56:18,184 | INFO     | corecount: 12
[2025-11-26 11:57:22] 2025-11-26 16:56:18,184 | INFO     | event service: False
[2025-11-26 11:57:22] 2025-11-26 16:56:18,184 | INFO     | sizes: {0: 2284025, 1: 2284109, 2: 2284308, 13: 2284308, 23: 2284364, 33: 2284654, 34: 2284838, 128931: 2368321, 128934: 2368320, 128955: 2377375, 128958: 2377431,
[2025-11-26 11:57:22] 2025-11-26 16:56:18,184 | INFO     | --------------------------------------------------
[2025-11-26 11:57:22] 2025-11-26 16:56:18,184 | INFO     | 
[2025-11-26 11:57:22] 2025-11-26 16:56:18,184 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 11:57:22] 2025-11-26 16:56:18,323 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 11:57:22] 2025-11-26 16:56:18,323 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 11:57:22] 2025-11-26 16:56:18,323 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 11:57:22] 2025-11-26 16:56:18,323 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 11:57:22] 2025-11-26 16:56:18,323 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 11:57:22] 2025-11-26 16:56:18,323 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 11:57:22] 2025-11-26 16:56:18,323 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 11:57:22] 2025-11-26 16:56:18,323 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 11:57:22] 2025-11-26 16:56:18,324 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 11:57:22] 2025-11-26 16:56:18,324 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 11:57:22] 2025-11-26 16:56:18,324 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 11:57:22] 2025-11-26 16:56:18,324 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 11:57:22] 2025-11-26 16:56:18,324 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 11:57:22] 2025-11-26 16:56:18,324 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 11:57:22] 2025-11-26 16:56:18,324 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 11:57:22] 2025-11-26 16:56:18,324 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 11:57:22] 2025-11-26 16:56:18,324 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 11:57:22] 2025-11-26 16:56:18,325 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 11:57:22] 2025-11-26 16:56:18,325 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 11:57:22] 2025-11-26 16:56:18,325 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 11:57:22] 2025-11-26 16:56:18,325 | INFO     | job 6895356962 has completed (purged errors)
[2025-11-26 11:57:22] 2025-11-26 16:56:18,325 | INFO     | overall cleanup function is called
[2025-11-26 11:57:22] 2025-11-26 16:56:19,409 | INFO     | --- collectZombieJob: --- 10, [1890642]
[2025-11-26 11:57:22] 2025-11-26 16:56:19,409 | INFO     | zombie collector waiting for pid 1890642
[2025-11-26 11:57:22] 2025-11-26 16:56:19,409 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 11:57:22] 2025-11-26 16:56:19,409 | INFO     | collected zombie processes
[2025-11-26 11:57:22] 2025-11-26 16:56:19,409 | INFO     | will attempt to kill all subprocesses of pid=1890642
[2025-11-26 11:57:22] 2025-11-26 16:56:20,848 | INFO     | process IDs to be killed: [1890642] (in reverse order)
[2025-11-26 11:57:22] 2025-11-26 16:56:21,150 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 11:57:22] 2025-11-26 16:56:21,150 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 11:57:22] 2025-11-26 16:56:21,215 | INFO     | did not find any defunct processes belonging to 1890642
[2025-11-26 11:57:22] 2025-11-26 16:56:21,265 | INFO     | did not find any defunct processes belonging to 1890642
[2025-11-26 11:57:22] 2025-11-26 16:56:21,277 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 11:57:22] 2025-11-26 16:56:21,278 | INFO     | ready for new job
[2025-11-26 11:57:22] 2025-11-26 16:56:21,278 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 11:57:22] 2025-11-26 16:56:21,330 | INFO     | ***************************************
[2025-11-26 11:57:22] 2025-11-26 16:56:21,330 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 11:57:22] 2025-11-26 16:56:21,330 | INFO     | ***************************************
[2025-11-26 11:57:22] 2025-11-26 16:56:21,330 | INFO     | 
[2025-11-26 11:57:22] 2025-11-26 16:56:21,354 | INFO     | architecture information:
[2025-11-26 11:57:22] 2025-11-26 16:56:21,361 | INFO     | executing command: cat /etc/os-release
[2025-11-26 11:57:22] 2025-11-26 16:56:21,421 | INFO     | cat /etc/os-release:
[2025-11-26 11:57:22] NAME="CentOS Linux"
[2025-11-26 11:57:22] VERSION="7 (Core)"
[2025-11-26 11:57:22] ID="centos"
[2025-11-26 11:57:22] ID_LIKE="rhel fedora"
[2025-11-26 11:57:22] VERSION_ID="7"
[2025-11-26 11:57:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 11:57:22] ANSI_COLOR="0;31"
[2025-11-26 11:57:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 11:57:22] HOME_URL="https://www.centos.org/"
[2025-11-26 11:57:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 11:57:22] 
[2025-11-26 11:57:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 11:57:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 11:57:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 11:57:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 11:57:22] 
[2025-11-26 11:57:22] 2025-11-26 16:56:21,422 | INFO     | ***************************************
[2025-11-26 11:57:22] 2025-11-26 16:56:21,932 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 11:57:22] 2025-11-26 16:56:22,057 | INFO     | sufficient remaining disk space (68520247296 B)
[2025-11-26 11:57:22] 2025-11-26 16:56:22,058 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 11:57:22] 2025-11-26 16:56:22,058 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 11:57:22] 2025-11-26 16:56:22,058 | INFO     | update_server=False
[2025-11-26 11:57:22] 2025-11-26 16:56:22,058 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 11:57:22] 2025-11-26 16:56:22,059 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:57:22] 2025-11-26 16:56:22,059 | INFO     | aborting loop
[2025-11-26 11:57:22] 2025-11-26 16:56:22,639 | INFO     | all data control threads have been joined
[2025-11-26 11:57:22] 2025-11-26 16:56:23,064 | INFO     | [job] retrieve thread has finished
[2025-11-26 11:57:22] 2025-11-26 16:56:23,065 | INFO     | [job] job monitor thread has finished
[2025-11-26 11:57:22] 2025-11-26 16:56:23,071 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 11:57:22] 2025-11-26 16:56:23,079 | INFO     | [data] copytool_in thread has finished
[2025-11-26 11:57:22] 2025-11-26 16:56:23,176 | INFO     | all job control threads have been joined
[2025-11-26 11:57:22] 2025-11-26 16:56:23,198 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:57:22] 2025-11-26 16:56:23,267 | INFO     | all payload control threads have been joined
[2025-11-26 11:57:22] 2025-11-26 16:56:23,388 | INFO     | [payload] failed_post thread has finished
[2025-11-26 11:57:22] 2025-11-26 16:56:23,494 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 11:57:22] 2025-11-26 16:56:23,645 | INFO     | [data] control thread has finished
[2025-11-26 11:57:22] 2025-11-26 16:56:23,865 | INFO     | [payload] validate_post thread has finished
[2025-11-26 11:57:22] 2025-11-26 16:56:23,872 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 11:57:22] 2025-11-26 16:56:24,188 | INFO     | [job] control thread has finished
[2025-11-26 11:57:22] 2025-11-26 16:56:24,236 | INFO     | [job] queue monitor thread has finished
[2025-11-26 11:57:22] 2025-11-26 16:56:24,237 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 11:57:22] 2025-11-26 16:56:24,245 | INFO     | [job] validate thread has finished
[2025-11-26 11:57:22] 2025-11-26 16:56:24,253 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 11:57:22] 2025-11-26 16:56:24,258 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 11:57:22] 2025-11-26 16:56:24,312 | INFO     | [payload] control thread has finished
[2025-11-26 11:57:22] 2025-11-26 16:56:25,556 | INFO     | [data] copytool_out thread has finished
[2025-11-26 11:57:22] 2025-11-26 16:56:27,932 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 11:57:22] 2025-11-26 16:56:54,159 | INFO     | PID=1877978 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 11:57:22] 2025-11-26 16:56:54,160 | INFO     | .. there are 12 such processes running
[2025-11-26 11:57:22] 2025-11-26 16:56:54,202 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 11:57:22] 2025-11-26 16:56:54,203 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 11:57:22] 2025-11-26 16:56:54,203 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 11:57:22] 2025-11-26 16:57:10,637 | INFO     | [monitor] cgroup control has ended
[2025-11-26 11:57:22] 2025-11-26 16:57:11,902 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140619211265856)>', '<ExcThread(monitor, started 140618487551744)>']
[2025-11-26 11:57:22] 2025-11-26 16:57:12,416 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 11:57:22] 2025-11-26 16:57:12,416 | INFO     | [monitor] control thread has ended
[2025-11-26 11:57:22] 2025-11-26 16:57:16,928 | INFO     | all workflow threads have been joined
[2025-11-26 11:57:22] 2025-11-26 16:57:16,928 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 11:57:22] 2025-11-26 16:57:16,928 | INFO     | traces error code: 0
[2025-11-26 11:57:22] 2025-11-26 16:57:16,929 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 11:57:22] 2025-11-26 16:57:17,538 [wrapper] ==== pilot stdout END ====
[2025-11-26 11:57:22] 2025-11-26 16:57:17,555 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 11:57:22] 2025-11-26 16:57:17,579 [wrapper] pilotpid: 1877978
[2025-11-26 11:57:22] 2025-11-26 16:57:17,666 [wrapper] Pilot exit status: 0
[2025-11-26 11:57:22] 2025-11-26 16:57:19,211 [wrapper] pandaids: 6895356962
[2025-11-26 11:57:22] 2025-11-26 16:57:19,282 [wrapper] cleanup supervisor_pilot 1189003 1877979
[2025-11-26 11:57:22] 2025-11-26 16:57:19,285 [wrapper] Test setup, not cleaning
[2025-11-26 11:57:22] 2025-11-26 16:57:19,288 [wrapper] apfmon messages muted
[2025-11-26 11:57:22] 2025-11-26 16:57:19,291 [wrapper] ==== wrapper stdout END ====
[2025-11-26 11:57:22] 2025-11-26 16:57:19,294 [wrapper] ==== wrapper stderr END ====
[2025-11-26 11:57:22]  *** Error codes and diagnostics ***
[2025-11-26 11:57:22]     "exeErrorCode": 0,
[2025-11-26 11:57:22]     "exeErrorDiag": "",
[2025-11-26 11:57:22]     "pilotErrorCode": 0,
[2025-11-26 11:57:22]     "pilotErrorDiag": "",
[2025-11-26 11:57:22]  *** Listing of results directory ***
[2025-11-26 11:57:22] total 1332376
[2025-11-26 11:57:22] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 06:12 pilot3.tar.gz
[2025-11-26 11:57:22] -rwx------. 1 boincer umatlas     36292 Nov 23 06:39 runpilot2-wrapper.sh
[2025-11-26 11:57:22] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 06:39 queuedata.json
[2025-11-26 11:57:22] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 11:57:22] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:03 run_atlas
[2025-11-26 11:57:22] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:03 job.xml
[2025-11-26 11:57:22] -rw-r--r--. 2 boincer umatlas 410574133 Nov 25 00:03 EVNT.47483658._001158.pool.root.1
[2025-11-26 11:57:22] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:03 start_atlas.sh
[2025-11-26 11:57:22] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:03 shared
[2025-11-26 11:57:22] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 00:03 input.tar.gz
[2025-11-26 11:57:22] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:03 boinc_lockfile
[2025-11-26 11:57:22] -rw-r--r--. 1 boincer umatlas      2781 Nov 25 00:03 pandaJob.out
[2025-11-26 11:57:22] -rw-------. 1 boincer umatlas        57 Nov 25 00:03 setup.sh.local
[2025-11-26 11:57:22] -rw-------. 1 boincer umatlas    991801 Nov 25 00:05 agis_schedconf.cvmfs.json
[2025-11-26 11:57:22] drwx------. 5 boincer umatlas      4096 Nov 25 00:05 pilot3
[2025-11-26 11:57:22] -rw-r--r--. 1 boincer umatlas       533 Nov 26 11:07 boinc_task_state.xml
[2025-11-26 11:57:22] -rw-------. 1 boincer umatlas 911638888 Nov 26 11:52 HITS.47556149._001441.pool.root.1
[2025-11-26 11:57:22] -rw-------. 1 boincer umatlas      1072 Nov 26 11:54 memory_monitor_summary.json
[2025-11-26 11:57:22] -rw-------. 1 boincer umatlas   1516240 Nov 26 11:55 agis_ddmendpoints.agis.ALL.json
[2025-11-26 11:57:22] -rw-------. 1 boincer umatlas   3326535 Nov 26 11:55 log.47556149._001441.job.log.tgz.1
[2025-11-26 11:57:22] -rw-r--r--. 1 boincer umatlas      6841 Nov 26 11:55 init_data.xml
[2025-11-26 11:57:22] -rw-------. 1 boincer umatlas      8661 Nov 26 11:56 heartbeat.json
[2025-11-26 11:57:22] -rw-------. 1 boincer umatlas        95 Nov 26 11:56 pilot_heartbeat.json
[2025-11-26 11:57:22] -rw-------. 1 boincer umatlas      4824 Nov 26 11:57 pilotlog.txt
[2025-11-26 11:57:22] -rw-------. 1 boincer umatlas  15783890 Nov 26 11:57 log.47556149._001441.job.log.1
[2025-11-26 11:57:22] -rw-r--r--. 1 boincer umatlas        29 Nov 26 11:57 wrapper_checkpoint.txt
[2025-11-26 11:57:22] -rw-------. 1 boincer umatlas       353 Nov 26 11:57 output.list
[2025-11-26 11:57:22] -rw-r--r--. 1 boincer umatlas       620 Nov 26 11:57 runtime_log
[2025-11-26 11:57:22] -rw-------. 1 boincer umatlas  19128320 Nov 26 11:57 result.tar.gz
[2025-11-26 11:57:22] -rw-r--r--. 1 boincer umatlas      9356 Nov 26 11:57 runtime_log.err
[2025-11-26 11:57:22] -rw-------. 1 boincer umatlas       670 Nov 26 11:57 ruLKDm2bNh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNWIKDml9hMXn.diag
[2025-11-26 11:57:22] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 11:57 boinc_mmap_file
[2025-11-26 11:57:22] -rw-r--r--. 1 boincer umatlas     21831 Nov 26 11:57 stderr.txt
[2025-11-26 11:57:22] HITS file was successfully produced:
[2025-11-26 11:57:22] -rw-------. 1 boincer umatlas 911638888 Nov 26 11:52 shared/HITS.pool.root.1
[2025-11-26 11:57:22]  *** Contents of shared directory: ***
[2025-11-26 11:57:22] total 1310508
[2025-11-26 11:57:22] -rw-r--r--. 2 boincer umatlas 410574133 Nov 25 00:03 ATLAS.root_0
[2025-11-26 11:57:22] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:03 start_atlas.sh
[2025-11-26 11:57:22] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 00:03 input.tar.gz
[2025-11-26 11:57:22] -rw-------. 1 boincer umatlas 911638888 Nov 26 11:52 HITS.pool.root.1
[2025-11-26 11:57:22] -rw-------. 1 boincer umatlas  19128320 Nov 26 11:57 result.tar.gz
11:57:43 (1868500): run_atlas exited; CPU time 239109.917812
11:57:43 (1868500): called boinc_finish(0)

</stderr_txt>
]]>

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