Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:10:01 (1158610): wrapper (7.7.26015): starting
00:10:01 (1158610): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:10:01] Arguments: --nthreads 9
[2025-11-24 00:10:01] Threads: 9
[2025-11-24 00:10:01] Checking for CVMFS
[2025-11-24 00:10:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:10:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:10:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:10:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:10:03] 2.13.3.0 44796 26591 357964 153234 0 398 25083507 32947200 26384 16776704 0 104930216 99.490 137099509 35394 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:10:03] CVMFS is ok
[2025-11-24 00:10:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:10:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:10:03] Further information can be found at the LHC@home message board.
[2025-11-24 00:10:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:10:03] Checking for apptainer binary...
[2025-11-24 00:10:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:10:03] Running /usr/bin/apptainer --version
[2025-11-24 00:10:03] apptainer version 1.4.4-1.el9
[2025-11-24 00:10:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:10:04] c6-6-8-2.aglt2.org
[2025-11-24 00:10:04] apptainer works
[2025-11-24 00:10:04] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:10:04] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:10:04] Starting ATLAS job with PandaID=6895351148
[2025-11-24 00:10:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:20:07 (1158610): BOINC client no longer exists - exiting
22:20:07 (1158610): timer handler: client dead, exiting
22:28:47 (1071808): wrapper (7.7.26015): starting
22:28:47 (1071808): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 22:28:47] Arguments: --nthreads 8
[2025-11-24 22:28:47] Threads: 8
[2025-11-24 22:28:47] This job has been restarted, cleaning up previous attempt
[2025-11-24 22:28:47] Checking for CVMFS
[2025-11-24 22:28:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 22:28:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 22:28:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 22:28:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 22:28:48] 2.13.3.0 44796 27929 355392 153268 0 378 27779739 32947200 26736 16776704 0 109865230 99.487 142855559 35069 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 22:28:48] CVMFS is ok
[2025-11-24 22:28:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 22:28:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 22:28:48] Further information can be found at the LHC@home message board.
[2025-11-24 22:28:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 22:28:48] Checking for apptainer binary...
[2025-11-24 22:28:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 22:28:48] Running /usr/bin/apptainer --version
[2025-11-24 22:28:48] apptainer version 1.4.4-1.el9
[2025-11-24 22:28:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 22:28:48] c6-6-8-2.aglt2.org
[2025-11-24 22:28:48] apptainer works
[2025-11-24 22:28:48] Set ATHENA_PROC_NUMBER=8
[2025-11-24 22:28:48] Set ATHENA_CORE_NUMBER=8
[2025-11-24 22:28:48] Starting ATLAS job with PandaID=6895351148
[2025-11-24 22:28:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 17:24:33]  *** The last 200 lines of the pilot log: ***
[2025-11-25 17:24:33] 2025-11-25 22:23:28,461 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 17:24:33] 2025-11-25 22:23:28,500 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2637.6402812499996
[2025-11-25 17:24:33] 2025-11-25 22:23:28,518 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6895351148/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 17:24:33] 2025-11-25 22:23:28,518 | INFO     | extracted standard info from prmon json
[2025-11-25 17:24:33] 2025-11-25 22:23:28,518 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 17:24:33] 2025-11-25 22:23:28,519 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 17:24:33] 2025-11-25 22:23:28,536 | INFO     | fitting pss+swap vs Time
[2025-11-25 17:24:33] 2025-11-25 22:23:28,544 | INFO     | sum of square deviations: 429827398290.2459
[2025-11-25 17:24:33] 2025-11-25 22:23:28,606 | INFO     | sum of deviations: 2538062774914.6235
[2025-11-25 17:24:33] 2025-11-25 22:23:28,607 | INFO     | mean x: 1764075402.173991
[2025-11-25 17:24:33] 2025-11-25 22:23:28,607 | INFO     | mean y: 2889311.8627802692
[2025-11-25 17:24:33] 2025-11-25 22:23:28,607 | INFO     | intersect: -10413696806.681898
[2025-11-25 17:24:33] 2025-11-25 22:23:28,608 | INFO     | chi2: 7.543363746875294
[2025-11-25 17:24:33] 2025-11-25 22:23:28,610 | INFO     | sum of square deviations: 424071480814.00806
[2025-11-25 17:24:33] 2025-11-25 22:23:28,635 | INFO     | sum of deviations: 2927311628455.418
[2025-11-25 17:24:33] 2025-11-25 22:23:28,635 | INFO     | mean x: 1764075249.6837838
[2025-11-25 17:24:33] 2025-11-25 22:23:28,635 | INFO     | mean y: 2899623.7675675675
[2025-11-25 17:24:33] 2025-11-25 22:23:28,635 | INFO     | intersect: -12174288009.688486
[2025-11-25 17:24:33] 2025-11-25 22:23:28,637 | INFO     | chi2: 4.1946300923074125
[2025-11-25 17:24:33] 2025-11-25 22:23:28,637 | INFO     | current chi2=4.1946300923074125 (change=44.39310852476173 %)
[2025-11-25 17:24:33] 2025-11-25 22:23:28,638 | INFO     | sum of square deviations: 418367192212.5557
[2025-11-25 17:24:33] 2025-11-25 22:23:28,663 | INFO     | sum of deviations: 3108920254278.738
[2025-11-25 17:24:33] 2025-11-25 22:23:28,664 | INFO     | mean x: 1764075097.1936653
[2025-11-25 17:24:33] 2025-11-25 22:23:28,664 | INFO     | mean y: 2904475.2488687783
[2025-11-25 17:24:33] 2025-11-25 22:23:28,664 | INFO     | intersect: -13106079455.182583
[2025-11-25 17:24:33] 2025-11-25 22:23:28,665 | INFO     | chi2: 3.2547938025783294
[2025-11-25 17:24:33] 2025-11-25 22:23:28,666 | INFO     | current chi2=3.2547938025783294 (change=22.405701314465396 %)
[2025-11-25 17:24:33] 2025-11-25 22:23:28,666 | INFO     | right removable region: 1104
[2025-11-25 17:24:33] 2025-11-25 22:23:28,667 | INFO     | sum of square deviations: 424070002174.00806
[2025-11-25 17:24:33] 2025-11-25 22:23:28,675 | INFO     | monitor loop #3365: job 0:6895351148 is in state 'finished'
[2025-11-25 17:24:33] 2025-11-25 22:23:28,676 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:24:33] 2025-11-25 22:23:28,692 | INFO     | sum of deviations: 2171396449936.2673
[2025-11-25 17:24:33] 2025-11-25 22:23:28,693 | INFO     | mean x: 1764075554.6837838
[2025-11-25 17:24:33] 2025-11-25 22:23:28,693 | INFO     | mean y: 2899019.564864865
[2025-11-25 17:24:33] 2025-11-25 22:23:28,693 | INFO     | intersect: -9029825241.105553
[2025-11-25 17:24:33] 2025-11-25 22:23:28,694 | INFO     | chi2: 4.763847862066903
[2025-11-25 17:24:33] 2025-11-25 22:23:28,695 | INFO     | current chi2=4.763847862066903 (change=36.84716763075036 %)
[2025-11-25 17:24:33] 2025-11-25 22:23:28,696 | INFO     | sum of square deviations: 418364640596.84674
[2025-11-25 17:24:33] 2025-11-25 22:23:28,721 | INFO     | sum of deviations: 2065194740082.0464
[2025-11-25 17:24:33] 2025-11-25 22:23:28,721 | INFO     | mean x: 1764075707.1882353
[2025-11-25 17:24:33] 2025-11-25 22:23:28,721 | INFO     | mean y: 2901857.942081448
[2025-11-25 17:24:33] 2025-11-25 22:23:28,721 | INFO     | intersect: -8705195141.828884
[2025-11-25 17:24:33] 2025-11-25 22:23:28,723 | INFO     | chi2: 4.635052967187761
[2025-11-25 17:24:33] 2025-11-25 22:23:28,723 | INFO     | current chi2=4.635052967187761 (change=2.703589589934172 %)
[2025-11-25 17:24:33] 2025-11-25 22:23:28,723 | INFO     | left removable region: 20
[2025-11-25 17:24:33] 2025-11-25 22:23:28,725 | INFO     | sum of square deviations: 394963813864.7061
[2025-11-25 17:24:33] 2025-11-25 22:23:28,746 | INFO     | sum of deviations: 2479157974413.882
[2025-11-25 17:24:33] 2025-11-25 22:23:28,746 | INFO     | mean x: 1764075676.7066422
[2025-11-25 17:24:33] 2025-11-25 22:23:28,746 | INFO     | mean y: 2922264.933579336
[2025-11-25 17:24:33] 2025-11-25 22:23:28,746 | INFO     | intersect: -11070047277.726707
[2025-11-25 17:24:33] 2025-11-25 22:23:28,747 | INFO     | chi2: 0.1630067473489889
[2025-11-25 17:24:33] 2025-11-25 22:23:28,748 | INFO     | current memory leak: 6.28 B/s (using 1084 data points, chi2=0.16)
[2025-11-25 17:24:33] 2025-11-25 22:23:28,749 | INFO     | could have reported an average CPU frequency of 2592 MHz (40 samples)
[2025-11-25 17:24:33] 2025-11-25 22:23:28,749 | INFO     | ..............................
[2025-11-25 17:24:33] 2025-11-25 22:23:28,750 | INFO     | . Timing measurements:
[2025-11-25 17:24:33] 2025-11-25 22:23:28,750 | INFO     | . get job = 0 s
[2025-11-25 17:24:33] 2025-11-25 22:23:28,750 | INFO     | . initial setup = 3 s
[2025-11-25 17:24:33] 2025-11-25 22:23:28,750 | INFO     | . payload setup = 18 s
[2025-11-25 17:24:33] 2025-11-25 22:23:28,750 | INFO     | . stage-in = 0 s
[2025-11-25 17:24:33] 2025-11-25 22:23:28,750 | INFO     | . payload execution = 67984 s
[2025-11-25 17:24:33] 2025-11-25 22:23:28,750 | INFO     | . stage-out = 4 s
[2025-11-25 17:24:33] 2025-11-25 22:23:28,750 | INFO     | . log creation = 0 s
[2025-11-25 17:24:33] 2025-11-25 22:23:28,750 | INFO     | ..............................
[2025-11-25 17:24:33] 2025-11-25 22:23:28,976 | INFO     | time since job start (68053s) is within the limit (172800.0s)
[2025-11-25 17:24:33] 2025-11-25 22:23:28,958 | INFO     | 
[2025-11-25 17:24:33] 2025-11-25 22:23:28,976 | INFO     | job summary report
[2025-11-25 17:24:33] 2025-11-25 22:23:28,977 | INFO     | --------------------------------------------------
[2025-11-25 17:24:33] 2025-11-25 22:23:28,977 | INFO     | PanDA job id: 6895351148
[2025-11-25 17:24:33] 2025-11-25 22:23:28,977 | INFO     | task id: 47556137
[2025-11-25 17:24:33] 2025-11-25 22:23:28,977 | INFO     | errors: (none)
[2025-11-25 17:24:33] 2025-11-25 22:23:28,977 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 17:24:33] 2025-11-25 22:23:28,977 | INFO     | pilot state: finished 
[2025-11-25 17:24:33] 2025-11-25 22:23:28,977 | INFO     | transexitcode: 0
[2025-11-25 17:24:33] 2025-11-25 22:23:28,977 | INFO     | exeerrorcode: 0
[2025-11-25 17:24:33] 2025-11-25 22:23:28,977 | INFO     | exeerrordiag: 
[2025-11-25 17:24:33] 2025-11-25 22:23:28,977 | INFO     | exitcode: 0
[2025-11-25 17:24:33] 2025-11-25 22:23:28,977 | INFO     | exitmsg: OK
[2025-11-25 17:24:33] 2025-11-25 22:23:28,977 | INFO     | cpuconsumptiontime: 269707 s
[2025-11-25 17:24:33] 2025-11-25 22:23:28,978 | INFO     | nevents: 1000
[2025-11-25 17:24:33] 2025-11-25 22:23:28,978 | INFO     | neventsw: 0
[2025-11-25 17:24:33] 2025-11-25 22:23:28,978 | INFO     | pid: 1130493
[2025-11-25 17:24:33] 2025-11-25 22:23:28,978 | INFO     | pgrp: 1130493
[2025-11-25 17:24:33] 2025-11-25 22:23:28,978 | INFO     | corecount: 8
[2025-11-25 17:24:33] 2025-11-25 22:23:28,978 | INFO     | event service: False
[2025-11-25 17:24:33] 2025-11-25 22:23:28,978 | INFO     | sizes: {0: 2283380, 1: 2284065, 2: 2284264, 12: 2284526, 13: 2284554, 68007: 2339760, 68013: 2348759, 68016: 2348815, 68029: 2349061}
[2025-11-25 17:24:33] 2025-11-25 22:23:28,978 | INFO     | --------------------------------------------------
[2025-11-25 17:24:33] 2025-11-25 22:23:28,978 | INFO     | 
[2025-11-25 17:24:33] 2025-11-25 22:23:28,978 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-25 17:24:33] 2025-11-25 22:23:29,050 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 17:24:33] 2025-11-25 22:23:29,050 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 17:24:33] 2025-11-25 22:23:29,050 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 17:24:33] 2025-11-25 22:23:29,050 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 17:24:33] 2025-11-25 22:23:29,050 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 17:24:33] 2025-11-25 22:23:29,051 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 17:24:33] 2025-11-25 22:23:29,051 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 17:24:33] 2025-11-25 22:23:29,051 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 17:24:33] 2025-11-25 22:23:29,051 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 17:24:33] 2025-11-25 22:23:29,051 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 17:24:33] 2025-11-25 22:23:29,051 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 17:24:33] 2025-11-25 22:23:29,051 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 17:24:33] 2025-11-25 22:23:29,051 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 17:24:33] 2025-11-25 22:23:29,051 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 17:24:33] 2025-11-25 22:23:29,051 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 17:24:33] 2025-11-25 22:23:29,052 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 17:24:33] 2025-11-25 22:23:29,052 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 17:24:33] 2025-11-25 22:23:29,052 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 17:24:33] 2025-11-25 22:23:29,052 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 17:24:33] 2025-11-25 22:23:29,052 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 17:24:33] 2025-11-25 22:23:29,052 | INFO     | job 6895351148 has completed (purged errors)
[2025-11-25 17:24:33] 2025-11-25 22:23:29,052 | INFO     | overall cleanup function is called
[2025-11-25 17:24:33] 2025-11-25 22:23:30,094 | INFO     | --- collectZombieJob: --- 10, [1130493]
[2025-11-25 17:24:33] 2025-11-25 22:23:30,095 | INFO     | zombie collector waiting for pid 1130493
[2025-11-25 17:24:33] 2025-11-25 22:23:30,095 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 17:24:33] 2025-11-25 22:23:30,095 | INFO     | collected zombie processes
[2025-11-25 17:24:33] 2025-11-25 22:23:30,095 | INFO     | will attempt to kill all subprocesses of pid=1130493
[2025-11-25 17:24:33] 2025-11-25 22:23:30,589 | INFO     | process IDs to be killed: [1130493] (in reverse order)
[2025-11-25 17:24:33] 2025-11-25 22:23:31,039 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 17:24:33] 2025-11-25 22:23:31,040 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 17:24:33] 2025-11-25 22:23:31,058 | INFO     | did not find any defunct processes belonging to 1130493
[2025-11-25 17:24:33] 2025-11-25 22:23:31,141 | INFO     | did not find any defunct processes belonging to 1130493
[2025-11-25 17:24:33] 2025-11-25 22:23:31,175 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 17:24:33] 2025-11-25 22:23:31,175 | INFO     | ready for new job
[2025-11-25 17:24:33] 2025-11-25 22:23:31,175 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 17:24:33] 2025-11-25 22:23:31,209 | INFO     | ***************************************
[2025-11-25 17:24:33] 2025-11-25 22:23:31,209 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 17:24:33] 2025-11-25 22:23:31,209 | INFO     | ***************************************
[2025-11-25 17:24:33] 2025-11-25 22:23:31,209 | INFO     | 
[2025-11-25 17:24:33] 2025-11-25 22:23:31,239 | INFO     | architecture information:
[2025-11-25 17:24:33] 2025-11-25 22:23:31,269 | INFO     | executing command: cat /etc/os-release
[2025-11-25 17:24:33] 2025-11-25 22:23:31,396 | INFO     | cat /etc/os-release:
[2025-11-25 17:24:33] NAME="CentOS Linux"
[2025-11-25 17:24:33] VERSION="7 (Core)"
[2025-11-25 17:24:33] ID="centos"
[2025-11-25 17:24:33] ID_LIKE="rhel fedora"
[2025-11-25 17:24:33] VERSION_ID="7"
[2025-11-25 17:24:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 17:24:33] ANSI_COLOR="0;31"
[2025-11-25 17:24:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 17:24:33] HOME_URL="https://www.centos.org/"
[2025-11-25 17:24:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 17:24:33] 
[2025-11-25 17:24:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 17:24:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 17:24:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 17:24:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 17:24:33] 
[2025-11-25 17:24:33] 2025-11-25 22:23:31,396 | INFO     | ***************************************
[2025-11-25 17:24:33] 2025-11-25 22:23:31,900 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-25 17:24:33] 2025-11-25 22:23:31,937 | INFO     | sufficient remaining disk space (66017296384 B)
[2025-11-25 17:24:33] 2025-11-25 22:23:31,938 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 17:24:33] 2025-11-25 22:23:31,938 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 17:24:33] 2025-11-25 22:23:31,938 | INFO     | update_server=False
[2025-11-25 17:24:33] 2025-11-25 22:23:31,938 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 17:24:33] 2025-11-25 22:23:31,938 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 17:24:33] 2025-11-25 22:23:31,939 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 17:24:33] 2025-11-25 22:23:32,055 | INFO     | all job control threads have been joined
[2025-11-25 17:24:33] 2025-11-25 22:23:32,156 | INFO     | all payload control threads have been joined
[2025-11-25 17:24:33] 2025-11-25 22:23:32,242 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:24:33] 2025-11-25 22:23:32,243 | INFO     | aborting loop
[2025-11-25 17:24:33] 2025-11-25 22:23:32,737 | INFO     | all data control threads have been joined
[2025-11-25 17:24:33] 2025-11-25 22:23:32,945 | INFO     | [job] retrieve thread has finished
[2025-11-25 17:24:33] 2025-11-25 22:23:33,062 | INFO     | [job] control thread has finished
[2025-11-25 17:24:33] 2025-11-25 22:23:33,080 | INFO     | [payload] failed_post thread has finished
[2025-11-25 17:24:33] 2025-11-25 22:23:33,110 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 17:24:33] 2025-11-25 22:23:33,163 | INFO     | [payload] control thread has finished
[2025-11-25 17:24:33] 2025-11-25 22:23:33,214 | INFO     | [data] copytool_in thread has finished
[2025-11-25 17:24:33] 2025-11-25 22:23:33,249 | INFO     | [job] job monitor thread has finished
[2025-11-25 17:24:33] 2025-11-25 22:23:33,256 | INFO     | [job] validate thread has finished
[2025-11-25 17:24:33] 2025-11-25 22:23:33,256 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 17:24:33] 2025-11-25 22:23:33,746 | INFO     | [data] control thread has finished
[2025-11-25 17:24:33] 2025-11-25 22:23:33,820 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 17:24:33] 2025-11-25 22:23:33,947 | INFO     | [data] copytool_out thread has finished
[2025-11-25 17:24:33] 2025-11-25 22:23:33,982 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:24:33] 2025-11-25 22:23:34,401 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 17:24:33] 2025-11-25 22:23:34,479 | INFO     | [payload] validate_post thread has finished
[2025-11-25 17:24:33] 2025-11-25 22:23:34,988 | INFO     | [job] queue monitor thread has finished
[2025-11-25 17:24:33] 2025-11-25 22:23:35,948 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 17:24:33] 2025-11-25 22:24:02,804 | INFO     | PID=1093158 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 17:24:33] 2025-11-25 22:24:02,804 | INFO     | .. there are 32 such processes running
[2025-11-25 17:24:33] 2025-11-25 22:24:02,818 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 17:24:33] 2025-11-25 22:24:02,818 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 17:24:33] 2025-11-25 22:24:02,818 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 17:24:33] 2025-11-25 22:24:25,592 | INFO     | [monitor] cgroup control has ended
[2025-11-25 17:24:33] 2025-11-25 22:24:27,016 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140462290925376)>', '<ExcThread(monitor, started 140461620565760)>']
[2025-11-25 17:24:33] 2025-11-25 22:24:27,972 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 17:24:33] 2025-11-25 22:24:27,973 | INFO     | [monitor] control thread has ended
[2025-11-25 17:24:33] 2025-11-25 22:24:32,067 | INFO     | all workflow threads have been joined
[2025-11-25 17:24:33] 2025-11-25 22:24:32,068 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 17:24:33] 2025-11-25 22:24:32,068 | INFO     | traces error code: 0
[2025-11-25 17:24:33] 2025-11-25 22:24:32,068 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 17:24:33] 2025-11-25 22:24:33,638 [wrapper] ==== pilot stdout END ====
[2025-11-25 17:24:33] 2025-11-25 22:24:33,646 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 17:24:33] 2025-11-25 22:24:33,649 [wrapper] pilotpid: 1093158
[2025-11-25 17:24:33] 2025-11-25 22:24:33,651 [wrapper] Pilot exit status: 0
[2025-11-25 17:24:33] 2025-11-25 22:24:33,710 [wrapper] pandaids: 6895351148 6895351148
[2025-11-25 17:24:33] 2025-11-25 22:24:33,797 [wrapper] cleanup supervisor_pilot  443993 1093159
[2025-11-25 17:24:33] 2025-11-25 22:24:33,800 [wrapper] Test setup, not cleaning
[2025-11-25 17:24:33] 2025-11-25 22:24:33,802 [wrapper] apfmon messages muted
[2025-11-25 17:24:33] 2025-11-25 22:24:33,804 [wrapper] ==== wrapper stdout END ====
[2025-11-25 17:24:33] 2025-11-25 22:24:33,806 [wrapper] ==== wrapper stderr END ====
[2025-11-25 17:24:33]  *** Error codes and diagnostics ***
[2025-11-25 17:24:33]     "exeErrorCode": 0,
[2025-11-25 17:24:33]     "exeErrorDiag": "",
[2025-11-25 17:24:33]     "pilotErrorCode": 0,
[2025-11-25 17:24:33]     "pilotErrorDiag": "",
[2025-11-25 17:24:33]  *** Listing of results directory ***
[2025-11-25 17:24:33] total 1716316
[2025-11-25 17:24:33] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 17:24:33] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 18:08 pilot3.tar.gz
[2025-11-25 17:24:33] -rwx------ 1 boincer umatlas     36292 Nov 22 18:19 runpilot2-wrapper.sh
[2025-11-25 17:24:33] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 18:19 queuedata.json
[2025-11-25 17:24:33] -rw-r--r-- 1 boincer umatlas       100 Nov 24 00:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 17:24:33] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 00:09 run_atlas
[2025-11-25 17:24:33] -rw-r--r-- 1 boincer umatlas       105 Nov 24 00:09 job.xml
[2025-11-25 17:24:33] -rw-r--r-- 3 boincer umatlas 410504680 Nov 24 00:10 EVNT.47483658._000540.pool.root.1
[2025-11-25 17:24:33] -rw-r--r-- 3 boincer umatlas 410504680 Nov 24 00:10 ATLAS.root_0
[2025-11-25 17:24:33] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 00:10 start_atlas.sh
[2025-11-25 17:24:33] drwxrwx--x 2 boincer umatlas      4096 Nov 24 00:10 shared
[2025-11-25 17:24:33] -rw-r--r-- 2 boincer umatlas    590102 Nov 24 00:10 input.tar.gz
[2025-11-25 17:24:33] -rw-r--r-- 1 boincer umatlas         0 Nov 24 00:10 boinc_lockfile
[2025-11-25 17:24:33] -rw-r--r-- 1 boincer umatlas      2784 Nov 24 22:28 pandaJob.out
[2025-11-25 17:24:33] -rw------- 1 boincer umatlas        57 Nov 24 22:28 setup.sh.local
[2025-11-25 17:24:33] -rw------- 1 boincer umatlas    991801 Nov 24 22:29 agis_schedconf.cvmfs.json
[2025-11-25 17:24:33] -rw-r--r-- 1 boincer umatlas       533 Nov 25 17:09 boinc_task_state.xml
[2025-11-25 17:24:33] -rw-r--r-- 1 boincer umatlas      6878 Nov 25 17:18 init_data.xml
[2025-11-25 17:24:33] -rw------- 1 boincer umatlas 912973686 Nov 25 17:22 HITS.47556137._005359.pool.root.1
[2025-11-25 17:24:33] -rw------- 1 boincer umatlas      1073 Nov 25 17:23 memory_monitor_summary.json
[2025-11-25 17:24:33] -rw------- 1 boincer umatlas   1516240 Nov 25 17:23 agis_ddmendpoints.agis.ALL.json
[2025-11-25 17:24:33] -rw------- 1 boincer umatlas   2155462 Nov 25 17:23 log.47556137._005359.job.log.tgz.1
[2025-11-25 17:24:33] -rw------- 1 boincer umatlas      8653 Nov 25 17:23 heartbeat.json
[2025-11-25 17:24:33] -rw------- 1 boincer umatlas        96 Nov 25 17:24 pilot_heartbeat.json
[2025-11-25 17:24:33] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 17:24 boinc_mmap_file
[2025-11-25 17:24:33] -rw-r--r-- 1 boincer umatlas        29 Nov 25 17:24 wrapper_checkpoint.txt
[2025-11-25 17:24:33] -rw------- 1 boincer umatlas      4824 Nov 25 17:24 pilotlog.txt
[2025-11-25 17:24:33] -rw------- 1 boincer umatlas   7640671 Nov 25 17:24 log.47556137._005359.job.log.1
[2025-11-25 17:24:33] -rw------- 1 boincer umatlas       353 Nov 25 17:24 output.list
[2025-11-25 17:24:33] -rw-r--r-- 1 boincer umatlas       620 Nov 25 17:24 runtime_log
[2025-11-25 17:24:33] -rw------- 1 boincer umatlas   9820160 Nov 25 17:24 result.tar.gz
[2025-11-25 17:24:33] -rw-r--r-- 1 boincer umatlas      9428 Nov 25 17:24 runtime_log.err
[2025-11-25 17:24:33] -rw------- 1 boincer umatlas       791 Nov 25 17:24 jAPLDmA4Bh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLMIKDmLqAfUn.diag
[2025-11-25 17:24:33] -rw-r--r-- 1 boincer umatlas     23644 Nov 25 17:24 stderr.txt
[2025-11-25 17:24:33] HITS file was successfully produced:
[2025-11-25 17:24:33] -rw------- 1 boincer umatlas 912973686 Nov 25 17:22 shared/HITS.pool.root.1
[2025-11-25 17:24:34]  *** Contents of shared directory: ***
[2025-11-25 17:24:34] total 1302656
[2025-11-25 17:24:34] -rw-r--r-- 3 boincer umatlas 410504680 Nov 24 00:10 ATLAS.root_0
[2025-11-25 17:24:34] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 00:10 start_atlas.sh
[2025-11-25 17:24:34] -rw-r--r-- 2 boincer umatlas    590102 Nov 24 00:10 input.tar.gz
[2025-11-25 17:24:34] -rw------- 1 boincer umatlas 912973686 Nov 25 17:22 HITS.pool.root.1
[2025-11-25 17:24:34] -rw------- 1 boincer umatlas   9820160 Nov 25 17:24 result.tar.gz
17:24:35 (1071808): run_atlas exited; CPU time 272222.948938
17:24:35 (1071808): called boinc_finish(0)

</stderr_txt>
]]>

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