Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:10:33 (1165142): wrapper (7.7.26015): starting
00:10:33 (1165142): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:10:33] Arguments: --nthreads 9
[2025-11-24 00:10:33] Threads: 9
[2025-11-24 00:10:33] Checking for CVMFS
[2025-11-24 00:10:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:10:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:10:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:10:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:10:36] 2.13.3.0 44796 26591 362160 153234 3 398 25083507 32947200 26958 16776704 0 104944549 99.490 137099509 35394 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:10:36] CVMFS is ok
[2025-11-24 00:10:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:10:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:10:36] Further information can be found at the LHC@home message board.
[2025-11-24 00:10:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:10:36] Checking for apptainer binary...
[2025-11-24 00:10:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:10:36] Running /usr/bin/apptainer --version
[2025-11-24 00:10:36] apptainer version 1.4.4-1.el9
[2025-11-24 00:10:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:10:37] c6-6-8-2.aglt2.org
[2025-11-24 00:10:37] apptainer works
[2025-11-24 00:10:37] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:10:37] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:10:37] Starting ATLAS job with PandaID=6895369026
[2025-11-24 00:10:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:20:07 (1165142): BOINC client no longer exists - exiting
22:20:07 (1165142): timer handler: client dead, exiting
22:28:47 (1071813): wrapper (7.7.26015): starting
22:28:47 (1071813): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 22:28:47] Arguments: --nthreads 8
[2025-11-24 22:28:47] Threads: 8
[2025-11-24 22:28:47] This job has been restarted, cleaning up previous attempt
[2025-11-24 22:28:47] Checking for CVMFS
[2025-11-24 22:28:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 22:28:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 22:28:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 22:28:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 22:28:48] 2.13.3.0 44796 27929 355392 153268 0 378 27779739 32947200 26736 16776704 0 109865230 99.487 142855559 35069 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 22:28:48] CVMFS is ok
[2025-11-24 22:28:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 22:28:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 22:28:48] Further information can be found at the LHC@home message board.
[2025-11-24 22:28:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 22:28:48] Checking for apptainer binary...
[2025-11-24 22:28:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 22:28:48] Running /usr/bin/apptainer --version
[2025-11-24 22:28:48] apptainer version 1.4.4-1.el9
[2025-11-24 22:28:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 22:28:48] c6-6-8-2.aglt2.org
[2025-11-24 22:28:48] apptainer works
[2025-11-24 22:28:48] Set ATHENA_PROC_NUMBER=8
[2025-11-24 22:28:48] Set ATHENA_CORE_NUMBER=8
[2025-11-24 22:28:48] Starting ATLAS job with PandaID=6895369026
[2025-11-24 22:28:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:41:08]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:41:08] 2025-11-26 21:40:05,781 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 16:41:08] 2025-11-26 21:40:05,798 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2576.814052083334
[2025-11-26 16:41:08] 2025-11-26 21:40:05,815 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6895369026/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 16:41:08] 2025-11-26 21:40:05,816 | INFO     | extracted standard info from prmon json
[2025-11-26 16:41:08] 2025-11-26 21:40:05,816 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 16:41:08] 2025-11-26 21:40:05,817 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 16:41:08] 2025-11-26 21:40:05,929 | INFO     | fitting pss+swap vs Time
[2025-11-26 16:41:08] 2025-11-26 21:40:05,937 | INFO     | sum of square deviations: 4775743019379.111
[2025-11-26 16:41:08] 2025-11-26 21:40:06,151 | INFO     | sum of deviations: 16160985355154.635
[2025-11-26 16:41:08] 2025-11-26 21:40:06,152 | INFO     | mean x: 1764117280.3336012
[2025-11-26 16:41:08] 2025-11-26 21:40:06,152 | INFO     | mean y: 2922578.518488746
[2025-11-26 16:41:08] 2025-11-26 21:40:06,152 | INFO     | intersect: -5966802638.386731
[2025-11-26 16:41:08] 2025-11-26 21:40:06,155 | INFO     | chi2: 6.68674014545349
[2025-11-26 16:41:08] 2025-11-26 21:40:06,159 | INFO     | sum of square deviations: 4747011086648.889
[2025-11-26 16:41:08] 2025-11-26 21:40:06,299 | INFO     | sum of deviations: 16957363677843.541
[2025-11-26 16:41:08] 2025-11-26 21:40:06,299 | INFO     | mean x: 1764117127.8393073
[2025-11-26 16:41:08] 2025-11-26 21:40:06,299 | INFO     | mean y: 2926805.445026178
[2025-11-26 16:41:08] 2025-11-26 21:40:06,299 | INFO     | intersect: -6298886095.5654955
[2025-11-26 16:41:08] 2025-11-26 21:40:06,302 | INFO     | chi2: 3.9079677674513924
[2025-11-26 16:41:08] 2025-11-26 21:40:06,303 | INFO     | current chi2=3.9079677674513924 (change=41.55645826750821 %)
[2025-11-26 16:41:08] 2025-11-26 21:40:06,306 | INFO     | sum of square deviations: 4718393433377.488
[2025-11-26 16:41:08] 2025-11-26 21:40:06,450 | INFO     | sum of deviations: 17201037044864.578
[2025-11-26 16:41:08] 2025-11-26 21:40:06,451 | INFO     | mean x: 1764116975.3418078
[2025-11-26 16:41:08] 2025-11-26 21:40:06,451 | INFO     | mean y: 2928103.099677159
[2025-11-26 16:41:08] 2025-11-26 21:40:06,451 | INFO     | intersect: -6428210349.593488
[2025-11-26 16:41:08] 2025-11-26 21:40:06,454 | INFO     | chi2: 3.430722775778227
[2025-11-26 16:41:08] 2025-11-26 21:40:06,454 | INFO     | current chi2=3.430722775778227 (change=12.212101533897863 %)
[2025-11-26 16:41:08] 2025-11-26 21:40:06,455 | INFO     | right removable region: 2477
[2025-11-26 16:41:08] 2025-11-26 21:40:06,458 | INFO     | sum of square deviations: 4747006786148.892
[2025-11-26 16:41:08] 2025-11-26 21:40:06,652 | INFO     | sum of deviations: 15331734535000.203
[2025-11-26 16:41:08] 2025-11-26 21:40:06,652 | INFO     | mean x: 1764117432.8393073
[2025-11-26 16:41:08] 2025-11-26 21:40:06,652 | INFO     | mean y: 2926978.4115988724
[2025-11-26 16:41:08] 2025-11-26 21:40:06,656 | INFO     | intersect: -5694764511.682254
[2025-11-26 16:41:08] 2025-11-26 21:40:06,660 | INFO     | chi2: 3.925583725997598
[2025-11-26 16:41:08] 2025-11-26 21:40:06,665 | INFO     | current chi2=3.925583725997598 (change=41.29301213137889 %)
[2025-11-26 16:41:08] 2025-11-26 21:40:06,673 | INFO     | sum of square deviations: 4718388465174.942
[2025-11-26 16:41:08] 2025-11-26 21:40:06,728 | INFO     | monitor loop #7916: job 0:6895369026 is in state 'finished'
[2025-11-26 16:41:08] 2025-11-26 21:40:06,728 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:41:08] 2025-11-26 21:40:06,862 | INFO     | time since job start (151851s) is within the limit (172800.0s)
[2025-11-26 16:41:08] 2025-11-26 21:40:06,973 | INFO     | sum of deviations: 15087935356649.262
[2025-11-26 16:41:08] 2025-11-26 21:40:06,973 | INFO     | mean x: 1764117585.3385794
[2025-11-26 16:41:08] 2025-11-26 21:40:06,974 | INFO     | mean y: 2928277.4656981435
[2025-11-26 16:41:08] 2025-11-26 21:40:06,974 | INFO     | intersect: -5638169797.770845
[2025-11-26 16:41:08] 2025-11-26 21:40:06,985 | INFO     | chi2: 3.818369504625993
[2025-11-26 16:41:08] 2025-11-26 21:40:06,986 | INFO     | current chi2=3.818369504625993 (change=2.7311663399653745 %)
[2025-11-26 16:41:08] 2025-11-26 21:40:06,986 | INFO     | left removable region: 20
[2025-11-26 16:41:08] 2025-11-26 21:40:06,997 | INFO     | sum of square deviations: 4599447769560.296
[2025-11-26 16:41:08] 2025-11-26 21:40:07,462 | INFO     | sum of deviations: 15729635257419.8
[2025-11-26 16:41:08] 2025-11-26 21:40:07,462 | INFO     | mean x: 1764117554.8494098
[2025-11-26 16:41:08] 2025-11-26 21:40:07,463 | INFO     | mean y: 2935984.094017094
[2025-11-26 16:41:08] 2025-11-26 21:40:07,463 | INFO     | intersect: -6030163439.849493
[2025-11-26 16:41:08] 2025-11-26 21:40:07,478 | INFO     | chi2: 0.44679940858058853
[2025-11-26 16:41:08] 2025-11-26 21:40:07,479 | INFO     | current memory leak: 3.42 B/s (using 2457 data points, chi2=0.45)
[2025-11-26 16:41:08] 2025-11-26 21:40:07,501 | INFO     | could have reported an average CPU frequency of 2596 MHz (86 samples)
[2025-11-26 16:41:08] 2025-11-26 21:40:07,501 | INFO     | ..............................
[2025-11-26 16:41:08] 2025-11-26 21:40:07,501 | INFO     | . Timing measurements:
[2025-11-26 16:41:08] 2025-11-26 21:40:07,502 | INFO     | . get job = 0 s
[2025-11-26 16:41:08] 2025-11-26 21:40:07,502 | INFO     | . initial setup = 3 s
[2025-11-26 16:41:08] 2025-11-26 21:40:07,502 | INFO     | . payload setup = 18 s
[2025-11-26 16:41:08] 2025-11-26 21:40:07,502 | INFO     | . stage-in = 0 s
[2025-11-26 16:41:08] 2025-11-26 21:40:07,502 | INFO     | . payload execution = 151778 s
[2025-11-26 16:41:08] 2025-11-26 21:40:07,502 | INFO     | . stage-out = 8 s
[2025-11-26 16:41:08] 2025-11-26 21:40:07,502 | INFO     | . log creation = 2 s
[2025-11-26 16:41:08] 2025-11-26 21:40:07,502 | INFO     | ..............................
[2025-11-26 16:41:08] 2025-11-26 21:40:07,937 | INFO     | 
[2025-11-26 16:41:08] 2025-11-26 21:40:07,937 | INFO     | job summary report
[2025-11-26 16:41:08] 2025-11-26 21:40:07,938 | INFO     | --------------------------------------------------
[2025-11-26 16:41:08] 2025-11-26 21:40:07,938 | INFO     | PanDA job id: 6895369026
[2025-11-26 16:41:08] 2025-11-26 21:40:07,938 | INFO     | task id: 47556137
[2025-11-26 16:41:08] 2025-11-26 21:40:07,938 | INFO     | errors: (none)
[2025-11-26 16:41:08] 2025-11-26 21:40:07,938 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 16:41:08] 2025-11-26 21:40:07,938 | INFO     | pilot state: finished 
[2025-11-26 16:41:08] 2025-11-26 21:40:07,938 | INFO     | transexitcode: 0
[2025-11-26 16:41:08] 2025-11-26 21:40:07,938 | INFO     | exeerrorcode: 0
[2025-11-26 16:41:08] 2025-11-26 21:40:07,938 | INFO     | exeerrordiag: 
[2025-11-26 16:41:08] 2025-11-26 21:40:07,938 | INFO     | exitcode: 0
[2025-11-26 16:41:08] 2025-11-26 21:40:07,938 | INFO     | exitmsg: OK
[2025-11-26 16:41:08] 2025-11-26 21:40:07,938 | INFO     | cpuconsumptiontime: 275350 s
[2025-11-26 16:41:08] 2025-11-26 21:40:07,938 | INFO     | nevents: 1000
[2025-11-26 16:41:08] 2025-11-26 21:40:07,939 | INFO     | neventsw: 0
[2025-11-26 16:41:08] 2025-11-26 21:40:07,939 | INFO     | pid: 1130625
[2025-11-26 16:41:08] 2025-11-26 21:40:07,939 | INFO     | pgrp: 1130625
[2025-11-26 16:41:08] 2025-11-26 21:40:07,939 | INFO     | corecount: 8
[2025-11-26 16:41:08] 2025-11-26 21:40:07,939 | INFO     | event service: False
[2025-11-26 16:41:08] 2025-11-26 21:40:07,939 | INFO     | sizes: {0: 2283481, 1: 2284166, 2: 2284365, 12: 2284627, 13: 2284655, 151802: 2376497, 151811: 2385496, 151814: 2385552, 151828: 2385798}
[2025-11-26 16:41:08] 2025-11-26 21:40:07,939 | INFO     | --------------------------------------------------
[2025-11-26 16:41:08] 2025-11-26 21:40:07,939 | INFO     | 
[2025-11-26 16:41:08] 2025-11-26 21:40:07,939 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-26 16:41:08] 2025-11-26 21:40:07,967 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 16:41:08] 2025-11-26 21:40:07,968 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 16:41:08] 2025-11-26 21:40:07,968 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 16:41:08] 2025-11-26 21:40:07,968 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 16:41:08] 2025-11-26 21:40:07,968 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 16:41:08] 2025-11-26 21:40:07,968 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 16:41:08] 2025-11-26 21:40:07,968 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 16:41:08] 2025-11-26 21:40:07,968 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 16:41:08] 2025-11-26 21:40:07,968 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 16:41:08] 2025-11-26 21:40:07,968 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 16:41:08] 2025-11-26 21:40:07,968 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 16:41:08] 2025-11-26 21:40:07,968 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 16:41:08] 2025-11-26 21:40:07,968 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 16:41:08] 2025-11-26 21:40:07,969 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 16:41:08] 2025-11-26 21:40:07,969 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 16:41:08] 2025-11-26 21:40:07,969 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 16:41:08] 2025-11-26 21:40:07,969 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 16:41:08] 2025-11-26 21:40:07,969 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 16:41:08] 2025-11-26 21:40:07,969 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 16:41:08] 2025-11-26 21:40:07,969 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 16:41:08] 2025-11-26 21:40:07,969 | INFO     | job 6895369026 has completed (purged errors)
[2025-11-26 16:41:08] 2025-11-26 21:40:07,970 | INFO     | overall cleanup function is called
[2025-11-26 16:41:08] 2025-11-26 21:40:08,988 | INFO     | --- collectZombieJob: --- 10, [1130625]
[2025-11-26 16:41:08] 2025-11-26 21:40:08,989 | INFO     | zombie collector waiting for pid 1130625
[2025-11-26 16:41:08] 2025-11-26 21:40:08,989 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 16:41:08] 2025-11-26 21:40:08,989 | INFO     | collected zombie processes
[2025-11-26 16:41:08] 2025-11-26 21:40:08,989 | INFO     | will attempt to kill all subprocesses of pid=1130625
[2025-11-26 16:41:08] 2025-11-26 21:40:09,999 | INFO     | process IDs to be killed: [1130625] (in reverse order)
[2025-11-26 16:41:08] 2025-11-26 21:40:10,180 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 16:41:08] 2025-11-26 21:40:10,181 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 16:41:08] 2025-11-26 21:40:10,200 | INFO     | did not find any defunct processes belonging to 1130625
[2025-11-26 16:41:08] 2025-11-26 21:40:10,224 | INFO     | did not find any defunct processes belonging to 1130625
[2025-11-26 16:41:08] 2025-11-26 21:40:10,233 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 16:41:08] 2025-11-26 21:40:10,233 | INFO     | ready for new job
[2025-11-26 16:41:08] 2025-11-26 21:40:10,233 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 16:41:08] 2025-11-26 21:40:10,256 | INFO     | ***************************************
[2025-11-26 16:41:08] 2025-11-26 21:40:10,257 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 16:41:08] 2025-11-26 21:40:10,257 | INFO     | ***************************************
[2025-11-26 16:41:08] 2025-11-26 21:40:10,257 | INFO     | 
[2025-11-26 16:41:08] 2025-11-26 21:40:10,267 | INFO     | architecture information:
[2025-11-26 16:41:08] 2025-11-26 21:40:10,272 | INFO     | executing command: cat /etc/os-release
[2025-11-26 16:41:08] 2025-11-26 21:40:10,317 | INFO     | cat /etc/os-release:
[2025-11-26 16:41:08] NAME="CentOS Linux"
[2025-11-26 16:41:08] VERSION="7 (Core)"
[2025-11-26 16:41:08] ID="centos"
[2025-11-26 16:41:08] ID_LIKE="rhel fedora"
[2025-11-26 16:41:08] VERSION_ID="7"
[2025-11-26 16:41:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 16:41:08] ANSI_COLOR="0;31"
[2025-11-26 16:41:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 16:41:08] HOME_URL="https://www.centos.org/"
[2025-11-26 16:41:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 16:41:08] 
[2025-11-26 16:41:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 16:41:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 16:41:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 16:41:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 16:41:08] 
[2025-11-26 16:41:08] 2025-11-26 21:40:10,317 | INFO     | ***************************************
[2025-11-26 16:41:08] 2025-11-26 21:40:10,821 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-26 16:41:08] 2025-11-26 21:40:10,867 | INFO     | sufficient remaining disk space (67424485376 B)
[2025-11-26 16:41:08] 2025-11-26 21:40:10,868 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 16:41:08] 2025-11-26 21:40:10,868 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:41:08] 2025-11-26 21:40:10,868 | INFO     | update_server=False
[2025-11-26 16:41:08] 2025-11-26 21:40:10,868 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:41:08] 2025-11-26 21:40:10,869 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:41:08] 2025-11-26 21:40:10,870 | INFO     | aborting loop
[2025-11-26 16:41:08] 2025-11-26 21:40:11,003 | INFO     | all data control threads have been joined
[2025-11-26 16:41:08] 2025-11-26 21:40:11,229 | INFO     | all job control threads have been joined
[2025-11-26 16:41:08] 2025-11-26 21:40:11,340 | INFO     | all payload control threads have been joined
[2025-11-26 16:41:08] 2025-11-26 21:40:11,875 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:41:08] 2025-11-26 21:40:11,875 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:41:08] 2025-11-26 21:40:11,919 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:41:08] 2025-11-26 21:40:12,010 | INFO     | [data] control thread has finished
[2025-11-26 16:41:08] 2025-11-26 21:40:12,225 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:41:08] 2025-11-26 21:40:12,236 | INFO     | [job] control thread has finished
[2025-11-26 16:41:08] 2025-11-26 21:40:12,347 | INFO     | [payload] control thread has finished
[2025-11-26 16:41:08] 2025-11-26 21:40:12,494 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:41:08] 2025-11-26 21:40:12,525 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:41:08] 2025-11-26 21:40:12,590 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:41:08] 2025-11-26 21:40:12,711 | INFO     | [job] validate thread has finished
[2025-11-26 16:41:08] 2025-11-26 21:40:12,970 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:41:08] 2025-11-26 21:40:12,996 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:41:08] 2025-11-26 21:40:13,225 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:41:08] 2025-11-26 21:40:13,225 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:41:08] 2025-11-26 21:40:13,717 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:41:08] 2025-11-26 21:40:13,929 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:41:08] 2025-11-26 21:40:13,977 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:41:08] 2025-11-26 21:40:17,727 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:41:08] 2025-11-26 21:40:41,881 | INFO     | PID=1093227 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 16:41:08] 2025-11-26 21:40:41,882 | INFO     | .. there are 39 such processes running
[2025-11-26 16:41:08] 2025-11-26 21:40:41,895 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:41:08] 2025-11-26 21:40:41,895 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:41:08] 2025-11-26 21:40:41,895 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:41:08] 2025-11-26 21:41:00,208 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:41:08] 2025-11-26 21:41:02,260 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139786756110144)>', '<ExcThread(monitor, started 139785750443776)>']
[2025-11-26 16:41:08] 2025-11-26 21:41:03,044 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:41:08] 2025-11-26 21:41:03,045 | INFO     | [monitor] control thread has ended
[2025-11-26 16:41:08] 2025-11-26 21:41:07,287 | INFO     | all workflow threads have been joined
[2025-11-26 16:41:08] 2025-11-26 21:41:07,288 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:41:08] 2025-11-26 21:41:07,288 | INFO     | traces error code: 0
[2025-11-26 16:41:08] 2025-11-26 21:41:07,289 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:41:08] 2025-11-26 21:41:07,554 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:41:08] 2025-11-26 21:41:07,579 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:41:08] 2025-11-26 21:41:07,591 [wrapper] pilotpid: 1093227
[2025-11-26 16:41:08] 2025-11-26 21:41:07,629 [wrapper] Pilot exit status: 0
[2025-11-26 16:41:08] 2025-11-26 21:41:07,765 [wrapper] pandaids: 6895369026 6895369026
[2025-11-26 16:41:08] 2025-11-26 21:41:07,883 [wrapper] cleanup supervisor_pilot 1212339 1093228
[2025-11-26 16:41:08] 2025-11-26 21:41:07,889 [wrapper] Test setup, not cleaning
[2025-11-26 16:41:08] 2025-11-26 21:41:07,903 [wrapper] apfmon messages muted
[2025-11-26 16:41:08] 2025-11-26 21:41:07,906 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:41:08] 2025-11-26 21:41:07,909 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:41:08]  *** Error codes and diagnostics ***
[2025-11-26 16:41:08]     "exeErrorCode": 0,
[2025-11-26 16:41:08]     "exeErrorDiag": "",
[2025-11-26 16:41:08]     "pilotErrorCode": 0,
[2025-11-26 16:41:08]     "pilotErrorDiag": "",
[2025-11-26 16:41:08]  *** Listing of results directory ***
[2025-11-26 16:41:08] total 1735692
[2025-11-26 16:41:08] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 16:41:08] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 14:32 pilot3.tar.gz
[2025-11-26 16:41:08] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 14:51 queuedata.json
[2025-11-26 16:41:08] -rwx------ 1 boincer umatlas     36292 Nov 23 14:54 runpilot2-wrapper.sh
[2025-11-26 16:41:08] -rw-r--r-- 1 boincer umatlas       100 Nov 24 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:41:08] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 00:10 run_atlas
[2025-11-26 16:41:08] -rw-r--r-- 1 boincer umatlas       105 Nov 24 00:10 job.xml
[2025-11-26 16:41:08] -rw-r--r-- 3 boincer umatlas 410124806 Nov 24 00:10 EVNT.47483658._000879.pool.root.1
[2025-11-26 16:41:08] -rw-r--r-- 3 boincer umatlas 410124806 Nov 24 00:10 ATLAS.root_0
[2025-11-26 16:41:08] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 00:10 start_atlas.sh
[2025-11-26 16:41:08] drwxrwx--x 2 boincer umatlas      4096 Nov 24 00:10 shared
[2025-11-26 16:41:08] -rw-r--r-- 2 boincer umatlas    590101 Nov 24 00:10 input.tar.gz
[2025-11-26 16:41:08] -rw-r--r-- 1 boincer umatlas         0 Nov 24 00:10 boinc_lockfile
[2025-11-26 16:41:08] -rw-r--r-- 1 boincer umatlas      2785 Nov 24 22:28 pandaJob.out
[2025-11-26 16:41:08] -rw------- 1 boincer umatlas        57 Nov 24 22:28 setup.sh.local
[2025-11-26 16:41:08] -rw------- 1 boincer umatlas    991801 Nov 24 22:29 agis_schedconf.cvmfs.json
[2025-11-26 16:41:08] -rw-r--r-- 1 boincer umatlas       534 Nov 26 16:27 boinc_task_state.xml
[2025-11-26 16:41:08] -rw-r--r-- 1 boincer umatlas      6879 Nov 26 16:38 init_data.xml
[2025-11-26 16:41:08] -rw------- 1 boincer umatlas 911913904 Nov 26 16:38 HITS.47556137._008653.pool.root.1
[2025-11-26 16:41:08] -rw------- 1 boincer umatlas      1089 Nov 26 16:39 memory_monitor_summary.json
[2025-11-26 16:41:08] -rw------- 1 boincer umatlas   1516240 Nov 26 16:39 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:41:08] -rw------- 1 boincer umatlas   3101725 Nov 26 16:39 log.47556137._008653.job.log.tgz.1
[2025-11-26 16:41:08] -rw------- 1 boincer umatlas      8654 Nov 26 16:40 heartbeat.json
[2025-11-26 16:41:08] -rw------- 1 boincer umatlas        96 Nov 26 16:40 pilot_heartbeat.json
[2025-11-26 16:41:08] -rw-r--r-- 1 boincer umatlas        30 Nov 26 16:40 wrapper_checkpoint.txt
[2025-11-26 16:41:08] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 16:40 boinc_mmap_file
[2025-11-26 16:41:08] -rw------- 1 boincer umatlas      4824 Nov 26 16:41 pilotlog.txt
[2025-11-26 16:41:08] -rw------- 1 boincer umatlas  17525786 Nov 26 16:41 log.47556137._008653.job.log.1
[2025-11-26 16:41:08] -rw------- 1 boincer umatlas       353 Nov 26 16:41 output.list
[2025-11-26 16:41:08] -rw-r--r-- 1 boincer umatlas       620 Nov 26 16:41 runtime_log
[2025-11-26 16:41:08] -rw------- 1 boincer umatlas  20643840 Nov 26 16:41 result.tar.gz
[2025-11-26 16:41:08] -rw------- 1 boincer umatlas       792 Nov 26 16:41 tJuKDmnLVh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUjIKDmnj7FZm.diag
[2025-11-26 16:41:08] -rw-r--r-- 1 boincer umatlas      9429 Nov 26 16:41 runtime_log.err
[2025-11-26 16:41:08] -rw-r--r-- 1 boincer umatlas     23643 Nov 26 16:41 stderr.txt
[2025-11-26 16:41:08] HITS file was successfully produced:
[2025-11-26 16:41:08] -rw------- 1 boincer umatlas 911913904 Nov 26 16:38 shared/HITS.pool.root.1
[2025-11-26 16:41:08]  *** Contents of shared directory: ***
[2025-11-26 16:41:08] total 1311824
[2025-11-26 16:41:08] -rw-r--r-- 3 boincer umatlas 410124806 Nov 24 00:10 ATLAS.root_0
[2025-11-26 16:41:08] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 00:10 start_atlas.sh
[2025-11-26 16:41:08] -rw-r--r-- 2 boincer umatlas    590101 Nov 24 00:10 input.tar.gz
[2025-11-26 16:41:08] -rw------- 1 boincer umatlas 911913904 Nov 26 16:38 HITS.pool.root.1
[2025-11-26 16:41:08] -rw------- 1 boincer umatlas  20643840 Nov 26 16:41 result.tar.gz
16:41:10 (1071813): run_atlas exited; CPU time 281620.358531
16:41:10 (1071813): called boinc_finish(0)

</stderr_txt>
]]>

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