Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:40:02 (431444): wrapper (7.7.26015): starting
18:40:02 (431444): wrapper: running run_atlas (--nthreads 10)
[2025-11-24 18:40:02] Arguments: --nthreads 10
[2025-11-24 18:40:02] Threads: 10
[2025-11-24 18:40:02] Checking for CVMFS
[2025-11-24 18:40:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 18:40:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 18:40:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 18:40:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 18:40:03] 2.13.3.0 44796 27701 372884 153263 0 601 27382744 32947201 30897 16776704 0 109219586 99.485 142771728 35063 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 18:40:03] CVMFS is ok
[2025-11-24 18:40:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 18:40:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 18:40:03] Further information can be found at the LHC@home message board.
[2025-11-24 18:40:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 18:40:03] Checking for apptainer binary...
[2025-11-24 18:40:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 18:40:03] Running /usr/bin/apptainer --version
[2025-11-24 18:40:03] apptainer version 1.4.4-1.el9
[2025-11-24 18:40:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 18:40:03] c6-6-8-2.aglt2.org
[2025-11-24 18:40:03] apptainer works
[2025-11-24 18:40:03] Set ATHENA_PROC_NUMBER=10
[2025-11-24 18:40:03] Set ATHENA_CORE_NUMBER=10
[2025-11-24 18:40:03] Starting ATLAS job with PandaID=6895350475
[2025-11-24 18:40:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:28:47 (1071817): wrapper (7.7.26015): starting
22:28:47 (1071817): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 22:28:47] Arguments: --nthreads 8
[2025-11-24 22:28:47] Threads: 8
[2025-11-24 22:28:47] This job has been restarted, cleaning up previous attempt
[2025-11-24 22:28:47] Checking for CVMFS
[2025-11-24 22:28:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 22:28:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 22:28:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 22:28:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 22:28:48] 2.13.3.0 44796 27929 355392 153268 0 378 27779739 32947200 26736 16776704 0 109865230 99.487 142855559 35069 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 22:28:48] CVMFS is ok
[2025-11-24 22:28:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 22:28:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 22:28:48] Further information can be found at the LHC@home message board.
[2025-11-24 22:28:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 22:28:48] Checking for apptainer binary...
[2025-11-24 22:28:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 22:28:48] Running /usr/bin/apptainer --version
[2025-11-24 22:28:48] apptainer version 1.4.4-1.el9
[2025-11-24 22:28:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 22:28:48] c6-6-8-2.aglt2.org
[2025-11-24 22:28:48] apptainer works
[2025-11-24 22:28:48] Set ATHENA_PROC_NUMBER=8
[2025-11-24 22:28:48] Set ATHENA_CORE_NUMBER=8
[2025-11-24 22:28:48] Starting ATLAS job with PandaID=6895350475
[2025-11-24 22:28:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 17:26:30]  *** The last 200 lines of the pilot log: ***
[2025-11-25 17:26:30] 2025-11-25 22:25:56,366 | INFO     | time since job start (68201s) is within the limit (172800.0s)
[2025-11-25 17:26:30] 2025-11-25 22:25:57,050 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 17:26:30] 2025-11-25 22:25:57,136 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2603.4442187500003
[2025-11-25 17:26:30] 2025-11-25 22:25:57,191 | INFO     | monitor loop #3906: job 0:6895350475 is in state 'finished'
[2025-11-25 17:26:30] 2025-11-25 22:25:57,192 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:26:30] 2025-11-25 22:25:57,231 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895350475/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 17:26:30] 2025-11-25 22:25:57,232 | INFO     | extracted standard info from prmon json
[2025-11-25 17:26:30] 2025-11-25 22:25:57,232 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 17:26:30] 2025-11-25 22:25:57,232 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 17:26:30] 2025-11-25 22:25:57,252 | INFO     | fitting pss+swap vs Time
[2025-11-25 17:26:30] 2025-11-25 22:25:57,253 | INFO     | sum of square deviations: 432140860472.23126
[2025-11-25 17:26:30] 2025-11-25 22:25:57,280 | INFO     | sum of deviations: 2372362547416.5864
[2025-11-25 17:26:30] 2025-11-25 22:25:57,280 | INFO     | mean x: 1764075462.193375
[2025-11-25 17:26:30] 2025-11-25 22:25:57,280 | INFO     | mean y: 2864769.025067144
[2025-11-25 17:26:30] 2025-11-25 22:25:57,280 | INFO     | intersect: -9681538952.370058
[2025-11-25 17:26:30] 2025-11-25 22:25:57,282 | INFO     | chi2: 7.335271243703595
[2025-11-25 17:26:30] 2025-11-25 22:25:57,283 | INFO     | sum of square deviations: 426364234258.0692
[2025-11-25 17:26:30] 2025-11-25 22:25:57,309 | INFO     | sum of deviations: 2750249300369.941
[2025-11-25 17:26:30] 2025-11-25 22:25:57,309 | INFO     | mean x: 1764075309.7032373
[2025-11-25 17:26:30] 2025-11-25 22:25:57,309 | INFO     | mean y: 2874742.9604316545
[2025-11-25 17:26:30] 2025-11-25 22:25:57,309 | INFO     | intersect: -11376238457.643108
[2025-11-25 17:26:30] 2025-11-25 22:25:57,311 | INFO     | chi2: 4.125345747653041
[2025-11-25 17:26:30] 2025-11-25 22:25:57,311 | INFO     | current chi2=4.125345747653041 (change=43.76014723117254 %)
[2025-11-25 17:26:30] 2025-11-25 22:25:57,312 | INFO     | sum of square deviations: 420639329943.68695
[2025-11-25 17:26:30] 2025-11-25 22:25:57,337 | INFO     | sum of deviations: 2918198594258.3354
[2025-11-25 17:26:30] 2025-11-25 22:25:57,337 | INFO     | mean x: 1764075157.213189
[2025-11-25 17:26:30] 2025-11-25 22:25:57,337 | INFO     | mean y: 2879214.5112917796
[2025-11-25 17:26:30] 2025-11-25 22:25:57,337 | INFO     | intersect: -12235447726.135836
[2025-11-25 17:26:30] 2025-11-25 22:25:57,339 | INFO     | chi2: 3.3255864950417386
[2025-11-25 17:26:30] 2025-11-25 22:25:57,339 | INFO     | current chi2=3.3255864950417386 (change=19.386478165285784 %)
[2025-11-25 17:26:30] 2025-11-25 22:25:57,339 | INFO     | right removable region: 1106
[2025-11-25 17:26:30] 2025-11-25 22:25:57,340 | INFO     | sum of square deviations: 426362739758.0687
[2025-11-25 17:26:30] 2025-11-25 22:25:57,372 | INFO     | sum of deviations: 2007857153044.7363
[2025-11-25 17:26:30] 2025-11-25 22:25:57,372 | INFO     | mean x: 1764075614.7032373
[2025-11-25 17:26:30] 2025-11-25 22:25:57,372 | INFO     | mean y: 2874384.8507194244
[2025-11-25 17:26:30] 2025-11-25 22:25:57,372 | INFO     | intersect: -8304633544.907709
[2025-11-25 17:26:30] 2025-11-25 22:25:57,374 | INFO     | chi2: 4.537914426313341
[2025-11-25 17:26:30] 2025-11-25 22:25:57,374 | INFO     | current chi2=4.537914426313341 (change=38.13569702403891 %)
[2025-11-25 17:26:30] 2025-11-25 22:25:57,376 | INFO     | sum of square deviations: 420637358072.8804
[2025-11-25 17:26:30] 2025-11-25 22:25:57,408 | INFO     | sum of deviations: 1910599811750.752
[2025-11-25 17:26:30] 2025-11-25 22:25:57,408 | INFO     | mean x: 1764075767.1996386
[2025-11-25 17:26:30] 2025-11-25 22:25:57,408 | INFO     | mean y: 2876975.381210479
[2025-11-25 17:26:30] 2025-11-25 22:25:57,409 | INFO     | intersect: -8009827469.528611
[2025-11-25 17:26:30] 2025-11-25 22:25:57,410 | INFO     | chi2: 4.430615962852551
[2025-11-25 17:26:30] 2025-11-25 22:25:57,410 | INFO     | current chi2=4.430615962852551 (change=2.3644884715898113 %)
[2025-11-25 17:26:30] 2025-11-25 22:25:57,410 | INFO     | left removable region: 20
[2025-11-25 17:26:30] 2025-11-25 22:25:57,412 | INFO     | sum of square deviations: 397150798016.0177
[2025-11-25 17:26:30] 2025-11-25 22:25:57,439 | INFO     | sum of deviations: 2307347113490.7314
[2025-11-25 17:26:30] 2025-11-25 22:25:57,439 | INFO     | mean x: 1764075736.7219152
[2025-11-25 17:26:30] 2025-11-25 22:25:57,439 | INFO     | mean y: 2896726.8600368323
[2025-11-25 17:26:30] 2025-11-25 22:25:57,440 | INFO     | intersect: -10245943460.388395
[2025-11-25 17:26:30] 2025-11-25 22:25:57,441 | INFO     | chi2: 0.215245966446746
[2025-11-25 17:26:30] 2025-11-25 22:25:57,442 | INFO     | current memory leak: 5.81 B/s (using 1086 data points, chi2=0.22)
[2025-11-25 17:26:30] 2025-11-25 22:25:57,444 | INFO     | could have reported an average CPU frequency of 2589 MHz (41 samples)
[2025-11-25 17:26:30] 2025-11-25 22:25:57,444 | INFO     | ..............................
[2025-11-25 17:26:30] 2025-11-25 22:25:57,445 | INFO     | . Timing measurements:
[2025-11-25 17:26:30] 2025-11-25 22:25:57,445 | INFO     | . get job = 0 s
[2025-11-25 17:26:30] 2025-11-25 22:25:57,445 | INFO     | . initial setup = 2 s
[2025-11-25 17:26:30] 2025-11-25 22:25:57,445 | INFO     | . payload setup = 17 s
[2025-11-25 17:26:30] 2025-11-25 22:25:57,445 | INFO     | . stage-in = 0 s
[2025-11-25 17:26:30] 2025-11-25 22:25:57,445 | INFO     | . payload execution = 68139 s
[2025-11-25 17:26:30] 2025-11-25 22:25:57,445 | INFO     | . stage-out = 4 s
[2025-11-25 17:26:30] 2025-11-25 22:25:57,445 | INFO     | . log creation = 0 s
[2025-11-25 17:26:30] 2025-11-25 22:25:57,445 | INFO     | ..............................
[2025-11-25 17:26:30] 2025-11-25 22:25:57,672 | INFO     | 
[2025-11-25 17:26:30] 2025-11-25 22:25:57,673 | INFO     | job summary report
[2025-11-25 17:26:30] 2025-11-25 22:25:57,673 | INFO     | --------------------------------------------------
[2025-11-25 17:26:30] 2025-11-25 22:25:57,673 | INFO     | PanDA job id: 6895350475
[2025-11-25 17:26:30] 2025-11-25 22:25:57,673 | INFO     | task id: 47556137
[2025-11-25 17:26:30] 2025-11-25 22:25:57,673 | INFO     | errors: (none)
[2025-11-25 17:26:30] 2025-11-25 22:25:57,673 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 17:26:30] 2025-11-25 22:25:57,673 | INFO     | pilot state: finished 
[2025-11-25 17:26:30] 2025-11-25 22:25:57,673 | INFO     | transexitcode: 0
[2025-11-25 17:26:30] 2025-11-25 22:25:57,673 | INFO     | exeerrorcode: 0
[2025-11-25 17:26:30] 2025-11-25 22:25:57,673 | INFO     | exeerrordiag: 
[2025-11-25 17:26:30] 2025-11-25 22:25:57,673 | INFO     | exitcode: 0
[2025-11-25 17:26:30] 2025-11-25 22:25:57,674 | INFO     | exitmsg: OK
[2025-11-25 17:26:30] 2025-11-25 22:25:57,674 | INFO     | cpuconsumptiontime: 269873 s
[2025-11-25 17:26:30] 2025-11-25 22:25:57,674 | INFO     | nevents: 1000
[2025-11-25 17:26:30] 2025-11-25 22:25:57,674 | INFO     | neventsw: 0
[2025-11-25 17:26:30] 2025-11-25 22:25:57,674 | INFO     | pid: 1130521
[2025-11-25 17:26:30] 2025-11-25 22:25:57,674 | INFO     | pgrp: 1130521
[2025-11-25 17:26:30] 2025-11-25 22:25:57,674 | INFO     | corecount: 8
[2025-11-25 17:26:30] 2025-11-25 22:25:57,674 | INFO     | event service: False
[2025-11-25 17:26:30] 2025-11-25 22:25:57,674 | INFO     | sizes: {0: 2284082, 1: 2284253, 2: 2284309, 12: 2284599, 68160: 2340146, 68165: 2349145, 68166: 2349329, 68176: 2349671}
[2025-11-25 17:26:30] 2025-11-25 22:25:57,674 | INFO     | --------------------------------------------------
[2025-11-25 17:26:30] 2025-11-25 22:25:57,674 | INFO     | 
[2025-11-25 17:26:30] 2025-11-25 22:25:57,674 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 17:26:30] 2025-11-25 22:25:57,763 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 17:26:30] 2025-11-25 22:25:57,763 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 17:26:30] 2025-11-25 22:25:57,763 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 17:26:30] 2025-11-25 22:25:57,763 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 17:26:30] 2025-11-25 22:25:57,763 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 17:26:30] 2025-11-25 22:25:57,763 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 17:26:30] 2025-11-25 22:25:57,763 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 17:26:30] 2025-11-25 22:25:57,764 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 17:26:30] 2025-11-25 22:25:57,764 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 17:26:30] 2025-11-25 22:25:57,764 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 17:26:30] 2025-11-25 22:25:57,764 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 17:26:30] 2025-11-25 22:25:57,764 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 17:26:30] 2025-11-25 22:25:57,764 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 17:26:30] 2025-11-25 22:25:57,764 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 17:26:30] 2025-11-25 22:25:57,764 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 17:26:30] 2025-11-25 22:25:57,764 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 17:26:30] 2025-11-25 22:25:57,764 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 17:26:30] 2025-11-25 22:25:57,764 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 17:26:30] 2025-11-25 22:25:57,764 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 17:26:30] 2025-11-25 22:25:57,765 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 17:26:30] 2025-11-25 22:25:57,765 | INFO     | job 6895350475 has completed (purged errors)
[2025-11-25 17:26:30] 2025-11-25 22:25:57,766 | INFO     | overall cleanup function is called
[2025-11-25 17:26:30] 2025-11-25 22:25:58,793 | INFO     | --- collectZombieJob: --- 10, [1130521]
[2025-11-25 17:26:30] 2025-11-25 22:25:58,793 | INFO     | zombie collector waiting for pid 1130521
[2025-11-25 17:26:30] 2025-11-25 22:25:58,794 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 17:26:30] 2025-11-25 22:25:58,794 | INFO     | collected zombie processes
[2025-11-25 17:26:30] 2025-11-25 22:25:58,794 | INFO     | will attempt to kill all subprocesses of pid=1130521
[2025-11-25 17:26:30] 2025-11-25 22:25:59,371 | INFO     | process IDs to be killed: [1130521] (in reverse order)
[2025-11-25 17:26:30] 2025-11-25 22:25:59,530 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 17:26:30] 2025-11-25 22:25:59,530 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 17:26:30] 2025-11-25 22:25:59,547 | INFO     | did not find any defunct processes belonging to 1130521
[2025-11-25 17:26:30] 2025-11-25 22:25:59,567 | INFO     | did not find any defunct processes belonging to 1130521
[2025-11-25 17:26:30] 2025-11-25 22:25:59,569 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 17:26:30] 2025-11-25 22:25:59,570 | INFO     | ready for new job
[2025-11-25 17:26:30] 2025-11-25 22:25:59,570 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 17:26:30] 2025-11-25 22:25:59,573 | INFO     | ***************************************
[2025-11-25 17:26:30] 2025-11-25 22:25:59,573 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 17:26:30] 2025-11-25 22:25:59,573 | INFO     | ***************************************
[2025-11-25 17:26:30] 2025-11-25 22:25:59,573 | INFO     | 
[2025-11-25 17:26:30] 2025-11-25 22:25:59,579 | INFO     | architecture information:
[2025-11-25 17:26:30] 2025-11-25 22:25:59,581 | INFO     | executing command: cat /etc/os-release
[2025-11-25 17:26:30] 2025-11-25 22:25:59,609 | INFO     | cat /etc/os-release:
[2025-11-25 17:26:30] NAME="CentOS Linux"
[2025-11-25 17:26:30] VERSION="7 (Core)"
[2025-11-25 17:26:30] ID="centos"
[2025-11-25 17:26:30] ID_LIKE="rhel fedora"
[2025-11-25 17:26:30] VERSION_ID="7"
[2025-11-25 17:26:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 17:26:30] ANSI_COLOR="0;31"
[2025-11-25 17:26:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 17:26:30] HOME_URL="https://www.centos.org/"
[2025-11-25 17:26:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 17:26:30] 
[2025-11-25 17:26:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 17:26:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 17:26:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 17:26:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 17:26:30] 
[2025-11-25 17:26:30] 2025-11-25 22:25:59,609 | INFO     | ***************************************
[2025-11-25 17:26:30] 2025-11-25 22:26:00,114 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 17:26:30] 2025-11-25 22:26:00,147 | INFO     | sufficient remaining disk space (67820847104 B)
[2025-11-25 17:26:30] 2025-11-25 22:26:00,147 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 17:26:30] 2025-11-25 22:26:00,147 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 17:26:30] 2025-11-25 22:26:00,147 | INFO     | update_server=False
[2025-11-25 17:26:30] 2025-11-25 22:26:00,147 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 17:26:30] 2025-11-25 22:26:00,148 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 17:26:30] 2025-11-25 22:26:00,596 | INFO     | all data control threads have been joined
[2025-11-25 17:26:30] 2025-11-25 22:26:00,702 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:26:30] 2025-11-25 22:26:00,703 | INFO     | aborting loop
[2025-11-25 17:26:30] 2025-11-25 22:26:00,826 | INFO     | all payload control threads have been joined
[2025-11-25 17:26:30] 2025-11-25 22:26:01,154 | INFO     | [job] retrieve thread has finished
[2025-11-25 17:26:30] 2025-11-25 22:26:01,277 | INFO     | [job] validate thread has finished
[2025-11-25 17:26:30] 2025-11-25 22:26:01,488 | INFO     | [payload] failed_post thread has finished
[2025-11-25 17:26:30] 2025-11-25 22:26:01,573 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 17:26:30] 2025-11-25 22:26:01,606 | INFO     | [data] control thread has finished
[2025-11-25 17:26:30] 2025-11-25 22:26:01,709 | INFO     | [job] job monitor thread has finished
[2025-11-25 17:26:30] 2025-11-25 22:26:01,714 | INFO     | all job control threads have been joined
[2025-11-25 17:26:30] 2025-11-25 22:26:01,745 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 17:26:30] 2025-11-25 22:26:01,833 | INFO     | [payload] control thread has finished
[2025-11-25 17:26:30] 2025-11-25 22:26:01,869 | INFO     | [payload] validate_post thread has finished
[2025-11-25 17:26:30] 2025-11-25 22:26:01,893 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 17:26:30] 2025-11-25 22:26:02,155 | INFO     | [data] copytool_out thread has finished
[2025-11-25 17:26:30] 2025-11-25 22:26:02,242 | INFO     | [data] copytool_in thread has finished
[2025-11-25 17:26:30] 2025-11-25 22:26:02,466 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 17:26:30] 2025-11-25 22:26:02,564 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:26:30] 2025-11-25 22:26:02,647 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 17:26:30] 2025-11-25 22:26:02,722 | INFO     | [job] control thread has finished
[2025-11-25 17:26:30] 2025-11-25 22:26:03,569 | INFO     | [job] queue monitor thread has finished
[2025-11-25 17:26:30] 2025-11-25 22:26:05,908 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 17:26:30] 2025-11-25 22:26:17,801 | INFO     | [monitor] cgroup control has ended
[2025-11-25 17:26:30] 2025-11-25 22:26:18,096 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140517393512256)>', '<ExcThread(monitor, started 140516607903488)>']
[2025-11-25 17:26:30] 2025-11-25 22:26:23,122 | INFO     | all workflow threads have been joined
[2025-11-25 17:26:30] 2025-11-25 22:26:23,123 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 17:26:30] 2025-11-25 22:26:23,123 | INFO     | traces error code: 0
[2025-11-25 17:26:30] 2025-11-25 22:26:23,123 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 17:26:30] 2025-11-25 22:26:30,066 | INFO     | PID=1093428 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 17:26:30] 2025-11-25 22:26:30,067 | INFO     | .. there are 30 such processes running
[2025-11-25 17:26:30] 2025-11-25 22:26:30,068 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 17:26:30] 2025-11-25 22:26:30,068 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 17:26:30] 2025-11-25 22:26:30,068 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 17:26:30] 2025-11-25 22:26:30,068 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 17:26:30] 2025-11-25 22:26:30,068 | INFO     | [monitor] control thread has ended
[2025-11-25 17:26:30] 2025-11-25 22:26:30,246 [wrapper] ==== pilot stdout END ====
[2025-11-25 17:26:30] 2025-11-25 22:26:30,253 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 17:26:30] 2025-11-25 22:26:30,256 [wrapper] pilotpid: 1093428
[2025-11-25 17:26:30] 2025-11-25 22:26:30,258 [wrapper] Pilot exit status: 0
[2025-11-25 17:26:30] 2025-11-25 22:26:30,268 [wrapper] pandaids: 6895350475 6895350475
[2025-11-25 17:26:30] 2025-11-25 22:26:30,351 [wrapper] cleanup supervisor_pilot  444020 1093429
[2025-11-25 17:26:30] 2025-11-25 22:26:30,353 [wrapper] Test setup, not cleaning
[2025-11-25 17:26:30] 2025-11-25 22:26:30,359 [wrapper] apfmon messages muted
[2025-11-25 17:26:30] 2025-11-25 22:26:30,396 [wrapper] ==== wrapper stdout END ====
[2025-11-25 17:26:30] 2025-11-25 22:26:30,398 [wrapper] ==== wrapper stderr END ====
[2025-11-25 17:26:30]  *** Error codes and diagnostics ***
[2025-11-25 17:26:30]     "exeErrorCode": 0,
[2025-11-25 17:26:30]     "exeErrorDiag": "",
[2025-11-25 17:26:30]     "pilotErrorCode": 0,
[2025-11-25 17:26:30]     "pilotErrorDiag": "",
[2025-11-25 17:26:30]  *** Listing of results directory ***
[2025-11-25 17:26:30] total 1720244
[2025-11-25 17:26:30] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 17:26:30] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 16:11 pilot3.tar.gz
[2025-11-25 17:26:30] -rwx------ 1 boincer umatlas     36292 Nov 22 16:20 runpilot2-wrapper.sh
[2025-11-25 17:26:30] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 16:20 queuedata.json
[2025-11-25 17:26:30] -rw-r--r-- 1 boincer umatlas       100 Nov 24 18:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 17:26:30] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 18:40 run_atlas
[2025-11-25 17:26:30] -rw-r--r-- 1 boincer umatlas       105 Nov 24 18:40 job.xml
[2025-11-25 17:26:30] -rw-r--r-- 3 boincer umatlas 408345515 Nov 24 18:40 EVNT.47483658._000513.pool.root.1
[2025-11-25 17:26:30] -rw-r--r-- 3 boincer umatlas 408345515 Nov 24 18:40 ATLAS.root_0
[2025-11-25 17:26:30] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 18:40 start_atlas.sh
[2025-11-25 17:26:30] drwxrwx--x 2 boincer umatlas      4096 Nov 24 18:40 shared
[2025-11-25 17:26:30] -rw-r--r-- 2 boincer umatlas    590096 Nov 24 18:40 input.tar.gz
[2025-11-25 17:26:30] -rw-r--r-- 1 boincer umatlas         0 Nov 24 18:40 boinc_lockfile
[2025-11-25 17:26:30] -rw-r--r-- 1 boincer umatlas      2782 Nov 24 22:28 pandaJob.out
[2025-11-25 17:26:30] -rw------- 1 boincer umatlas        57 Nov 24 22:28 setup.sh.local
[2025-11-25 17:26:30] -rw------- 1 boincer umatlas    991801 Nov 24 22:29 agis_schedconf.cvmfs.json
[2025-11-25 17:26:30] -rw-r--r-- 1 boincer umatlas       533 Nov 25 17:10 boinc_task_state.xml
[2025-11-25 17:26:30] -rw-r--r-- 1 boincer umatlas      6878 Nov 25 17:18 init_data.xml
[2025-11-25 17:26:30] -rw------- 1 boincer umatlas 919717480 Nov 25 17:24 HITS.47556137._005081.pool.root.1
[2025-11-25 17:26:30] -rw------- 1 boincer umatlas        96 Nov 25 17:25 pilot_heartbeat.json
[2025-11-25 17:26:30] -rw------- 1 boincer umatlas      1080 Nov 25 17:25 memory_monitor_summary.json
[2025-11-25 17:26:30] -rw------- 1 boincer umatlas   1516240 Nov 25 17:25 agis_ddmendpoints.agis.ALL.json
[2025-11-25 17:26:30] -rw------- 1 boincer umatlas   2217921 Nov 25 17:25 log.47556137._005081.job.log.tgz.1
[2025-11-25 17:26:30] -rw------- 1 boincer umatlas      8677 Nov 25 17:25 heartbeat.json
[2025-11-25 17:26:30] -rw-r--r-- 1 boincer umatlas        29 Nov 25 17:26 wrapper_checkpoint.txt
[2025-11-25 17:26:30] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 17:26 boinc_mmap_file
[2025-11-25 17:26:30] -rw------- 1 boincer umatlas       823 Nov 25 17:26 pilotlog.txt
[2025-11-25 17:26:30] -rw------- 1 boincer umatlas   8377480 Nov 25 17:26 log.47556137._005081.job.log.1
[2025-11-25 17:26:30] -rw------- 1 boincer umatlas       353 Nov 25 17:26 output.list
[2025-11-25 17:26:30] -rw-r--r-- 1 boincer umatlas       620 Nov 25 17:26 runtime_log
[2025-11-25 17:26:30] -rw------- 1 boincer umatlas  10618880 Nov 25 17:26 result.tar.gz
[2025-11-25 17:26:30] -rw------- 1 boincer umatlas       791 Nov 25 17:26 bmdLDmADAh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxIIKDm31wqEm.diag
[2025-11-25 17:26:30] -rw-r--r-- 1 boincer umatlas      9428 Nov 25 17:26 runtime_log.err
[2025-11-25 17:26:30] -rw-r--r-- 1 boincer umatlas     23515 Nov 25 17:26 stderr.txt
[2025-11-25 17:26:30] HITS file was successfully produced:
[2025-11-25 17:26:30] -rw------- 1 boincer umatlas 919717480 Nov 25 17:24 shared/HITS.pool.root.1
[2025-11-25 17:26:30]  *** Contents of shared directory: ***
[2025-11-25 17:26:30] total 1307916
[2025-11-25 17:26:30] -rw-r--r-- 3 boincer umatlas 408345515 Nov 24 18:40 ATLAS.root_0
[2025-11-25 17:26:30] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 18:40 start_atlas.sh
[2025-11-25 17:26:30] -rw-r--r-- 2 boincer umatlas    590096 Nov 24 18:40 input.tar.gz
[2025-11-25 17:26:30] -rw------- 1 boincer umatlas 919717480 Nov 25 17:24 HITS.pool.root.1
[2025-11-25 17:26:30] -rw------- 1 boincer umatlas  10618880 Nov 25 17:26 result.tar.gz
17:26:32 (1071817): run_atlas exited; CPU time 272651.736464
17:26:32 (1071817): called boinc_finish(0)

</stderr_txt>
]]>

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