Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:10:23 (2189166): wrapper (7.7.26015): starting
00:10:23 (2189166): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 00:10:23] Arguments: --nthreads 12
[2025-11-24 00:10:23] Threads: 12
[2025-11-24 00:10:23] Checking for CVMFS
[2025-11-24 00:10:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:10:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:10:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:10:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:10:25] 2.13.2.0 12166 32524 274588 153234 1 82 37346791 40960000 23098 16776704 0 57658849 99.725 35700240 34196 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:10:25] CVMFS is ok
[2025-11-24 00:10:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:10:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:10:25] Further information can be found at the LHC@home message board.
[2025-11-24 00:10:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:10:25] Checking for apptainer binary...
[2025-11-24 00:10:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:10:25] Running /usr/bin/apptainer --version
[2025-11-24 00:10:25] apptainer version 1.4.4-1.el9
[2025-11-24 00:10:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:10:26] c-211-33-1.aglt2.org
[2025-11-24 00:10:26] apptainer works
[2025-11-24 00:10:26] Set ATHENA_PROC_NUMBER=12
[2025-11-24 00:10:26] Set ATHENA_CORE_NUMBER=12
[2025-11-24 00:10:26] Starting ATLAS job with PandaID=6895356436
[2025-11-24 00:10:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:49:42 (3390740): wrapper (7.7.26015): starting
10:49:42 (3390740): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 10:49:42] Arguments: --nthreads 8
[2025-11-24 10:49:42] Threads: 8
[2025-11-24 10:49:42] This job has been restarted, cleaning up previous attempt
[2025-11-24 10:49:42] Checking for CVMFS
[2025-11-24 10:49:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 10:49:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 10:49:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 10:49:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 10:49:43] 2.13.2.0 12166 33163 283236 153250 3 192 40189026 40960000 17550 16776704 0 59414940 99.729 36436225 34211 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 10:49:43] CVMFS is ok
[2025-11-24 10:49:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 10:49:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 10:49:43] Further information can be found at the LHC@home message board.
[2025-11-24 10:49:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 10:49:43] Checking for apptainer binary...
[2025-11-24 10:49:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 10:49:43] Running /usr/bin/apptainer --version
[2025-11-24 10:49:43] apptainer version 1.4.4-1.el9
[2025-11-24 10:49:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 10:49:43] c-211-33-1.aglt2.org
[2025-11-24 10:49:43] apptainer works
[2025-11-24 10:49:43] Set ATHENA_PROC_NUMBER=8
[2025-11-24 10:49:43] Set ATHENA_CORE_NUMBER=8
[2025-11-24 10:49:43] Starting ATLAS job with PandaID=6895356436
[2025-11-24 10:49:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 08:58:05]  *** The last 200 lines of the pilot log: ***
[2025-11-26 08:58:05] 2025-11-26 13:57:19,423 | INFO     | time since job start (166036s) is within the limit (172800.0s)
[2025-11-26 08:58:05] 2025-11-26 13:57:20,696 | INFO     | monitor loop #10137: job 0:6895356436 is in state 'finished'
[2025-11-26 08:58:05] 2025-11-26 13:57:20,696 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:58:05] 2025-11-26 13:57:21,430 | INFO     | time since job start (166038s) is within the limit (172800.0s)
[2025-11-26 08:58:05] 2025-11-26 13:57:23,204 | INFO     | monitor loop #10138: job 0:6895356436 is in state 'finished'
[2025-11-26 08:58:05] 2025-11-26 13:57:23,204 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:58:05] 2025-11-26 13:57:23,437 | INFO     | time since job start (166040s) is within the limit (172800.0s)
[2025-11-26 08:58:05] 2025-11-26 13:57:25,444 | INFO     | time since job start (166042s) is within the limit (172800.0s)
[2025-11-26 08:58:05] 2025-11-26 13:57:25,711 | INFO     | monitor loop #10139: job 0:6895356436 is in state 'finished'
[2025-11-26 08:58:05] 2025-11-26 13:57:25,711 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:58:05] 2025-11-26 13:57:27,451 | INFO     | time since job start (166044s) is within the limit (172800.0s)
[2025-11-26 08:58:05] 2025-11-26 13:57:28,221 | INFO     | monitor loop #10140: job 0:6895356436 is in state 'finished'
[2025-11-26 08:58:05] 2025-11-26 13:57:28,221 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:58:05] 2025-11-26 13:57:29,005 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 08:58:05] 2025-11-26 13:57:29,042 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2529.9862291666673
[2025-11-26 08:58:05] 2025-11-26 13:57:29,095 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895356436/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 08:58:05] 2025-11-26 13:57:29,096 | INFO     | extracted standard info from prmon json
[2025-11-26 08:58:05] 2025-11-26 13:57:29,096 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 08:58:05] 2025-11-26 13:57:29,097 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 08:58:05] 2025-11-26 13:57:29,204 | INFO     | fitting pss+swap vs Time
[2025-11-26 08:58:05] 2025-11-26 13:57:29,209 | INFO     | sum of square deviations: 6246951573379.045
[2025-11-26 08:58:05] 2025-11-26 13:57:30,265 | INFO     | sum of deviations: 12649725930004.871
[2025-11-26 08:58:05] 2025-11-26 13:57:30,265 | INFO     | mean x: 1764082410.247703
[2025-11-26 08:58:05] 2025-11-26 13:57:30,265 | INFO     | mean y: 2951679.2138919514
[2025-11-26 08:58:05] 2025-11-26 13:57:30,265 | INFO     | intersect: -3569216080.6052136
[2025-11-26 08:58:05] 2025-11-26 13:57:30,276 | INFO     | chi2: 18.42223701729604
[2025-11-26 08:58:05] 2025-11-26 13:57:30,284 | INFO     | sum of square deviations: 6212579566328.725
[2025-11-26 08:58:05] 2025-11-26 13:57:30,810 | INFO     | PID=3414551 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 08:58:05] 2025-11-26 13:57:30,810 | INFO     | .. there are 20 such processes running
[2025-11-26 08:58:05] 2025-11-26 13:57:30,811 | INFO     | monitor loop #10141: job 0:6895356436 is in state 'finished'
[2025-11-26 08:58:05] 2025-11-26 13:57:30,811 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:58:05] 2025-11-26 13:57:30,908 | INFO     | sum of deviations: 13770161416650.986
[2025-11-26 08:58:05] 2025-11-26 13:57:30,908 | INFO     | mean x: 1764082257.7518408
[2025-11-26 08:58:05] 2025-11-26 13:57:30,908 | INFO     | mean y: 2956650.1498527247
[2025-11-26 08:58:05] 2025-11-26 13:57:30,908 | INFO     | intersect: -3907125656.5863724
[2025-11-26 08:58:05] 2025-11-26 13:57:30,916 | INFO     | chi2: 14.020867175058381
[2025-11-26 08:58:05] 2025-11-26 13:57:30,916 | INFO     | current chi2=14.020867175058381 (change=23.89161445542882 %)
[2025-11-26 08:58:05] 2025-11-26 13:57:30,916 | INFO     | right removable region: 2715
[2025-11-26 08:58:05] 2025-11-26 13:57:30,920 | INFO     | sum of square deviations: 6212576167047.727
[2025-11-26 08:58:05] 2025-11-26 13:57:31,091 | INFO     | sum of deviations: 11845569945892.504
[2025-11-26 08:58:05] 2025-11-26 13:57:31,092 | INFO     | mean x: 1764082562.7511046
[2025-11-26 08:58:05] 2025-11-26 13:57:31,092 | INFO     | mean y: 2955245.32916053
[2025-11-26 08:58:05] 2025-11-26 13:57:31,092 | INFO     | intersect: -3360635449.660701
[2025-11-26 08:58:05] 2025-11-26 13:57:31,095 | INFO     | chi2: 16.072488214547324
[2025-11-26 08:58:05] 2025-11-26 13:57:31,095 | INFO     | current chi2=16.072488214547324 (change=12.754959131958914 %)
[2025-11-26 08:58:05] 2025-11-26 13:57:31,096 | INFO     | left removable region: 10
[2025-11-26 08:58:05] 2025-11-26 13:57:31,099 | INFO     | sum of square deviations: 6137400516626.469
[2025-11-26 08:58:05] 2025-11-26 13:57:31,462 | INFO     | sum of deviations: 12917045788356.066
[2025-11-26 08:58:05] 2025-11-26 13:57:31,467 | INFO     | mean x: 1764082532.2554529
[2025-11-26 08:58:05] 2025-11-26 13:57:31,467 | INFO     | mean y: 2962535.606284658
[2025-11-26 08:58:05] 2025-11-26 13:57:31,467 | INFO     | intersect: -3709803933.170294
[2025-11-26 08:58:05] 2025-11-26 13:57:31,475 | INFO     | chi2: 10.560083315296788
[2025-11-26 08:58:05] 2025-11-26 13:57:31,475 | INFO     | current memory leak: 2.10 B/s (using 2705 data points, chi2=10.56)
[2025-11-26 08:58:05] 2025-11-26 13:57:31,478 | INFO     | could have reported an average CPU frequency of 2597 MHz (94 samples)
[2025-11-26 08:58:05] 2025-11-26 13:57:31,478 | INFO     | ..............................
[2025-11-26 08:58:05] 2025-11-26 13:57:31,478 | INFO     | . Timing measurements:
[2025-11-26 08:58:05] 2025-11-26 13:57:31,478 | INFO     | . get job = 0 s
[2025-11-26 08:58:05] 2025-11-26 13:57:31,478 | INFO     | . initial setup = 2 s
[2025-11-26 08:58:05] 2025-11-26 13:57:31,478 | INFO     | . payload setup = 11 s
[2025-11-26 08:58:05] 2025-11-26 13:57:31,478 | INFO     | . stage-in = 0 s
[2025-11-26 08:58:05] 2025-11-26 13:57:31,478 | INFO     | . payload execution = 165976 s
[2025-11-26 08:58:05] 2025-11-26 13:57:31,482 | INFO     | . stage-out = 7 s
[2025-11-26 08:58:05] 2025-11-26 13:57:31,482 | INFO     | . log creation = 2 s
[2025-11-26 08:58:05] 2025-11-26 13:57:31,482 | INFO     | ..............................
[2025-11-26 08:58:05] 2025-11-26 13:57:31,717 | INFO     | 
[2025-11-26 08:58:05] 2025-11-26 13:57:31,718 | INFO     | job summary report
[2025-11-26 08:58:05] 2025-11-26 13:57:31,718 | INFO     | --------------------------------------------------
[2025-11-26 08:58:05] 2025-11-26 13:57:31,718 | INFO     | PanDA job id: 6895356436
[2025-11-26 08:58:05] 2025-11-26 13:57:31,718 | INFO     | task id: 47556137
[2025-11-26 08:58:05] 2025-11-26 13:57:31,718 | INFO     | errors: (none)
[2025-11-26 08:58:05] 2025-11-26 13:57:31,718 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 08:58:05] 2025-11-26 13:57:31,718 | INFO     | pilot state: finished 
[2025-11-26 08:58:05] 2025-11-26 13:57:31,718 | INFO     | transexitcode: 0
[2025-11-26 08:58:05] 2025-11-26 13:57:31,718 | INFO     | exeerrorcode: 0
[2025-11-26 08:58:05] 2025-11-26 13:57:31,718 | INFO     | exeerrordiag: 
[2025-11-26 08:58:05] 2025-11-26 13:57:31,718 | INFO     | exitcode: 0
[2025-11-26 08:58:05] 2025-11-26 13:57:31,718 | INFO     | exitmsg: OK
[2025-11-26 08:58:05] 2025-11-26 13:57:31,719 | INFO     | cpuconsumptiontime: 275744 s
[2025-11-26 08:58:05] 2025-11-26 13:57:31,719 | INFO     | nevents: 1000
[2025-11-26 08:58:05] 2025-11-26 13:57:31,719 | INFO     | neventsw: 0
[2025-11-26 08:58:05] 2025-11-26 13:57:31,719 | INFO     | pid: 3448581
[2025-11-26 08:58:05] 2025-11-26 13:57:31,719 | INFO     | pgrp: 3448581
[2025-11-26 08:58:05] 2025-11-26 13:57:31,719 | INFO     | corecount: 8
[2025-11-26 08:58:05] 2025-11-26 13:57:31,719 | INFO     | event service: False
[2025-11-26 08:58:05] 2025-11-26 13:57:31,719 | INFO     | sizes: {0: 2284310, 1: 2284310, 8: 2284600, 12: 2284628, 165991: 2387873, 165992: 2387872, 166000: 2397055, 166003: 2397111, 166029: 2397357}
[2025-11-26 08:58:05] 2025-11-26 13:57:31,719 | INFO     | --------------------------------------------------
[2025-11-26 08:58:05] 2025-11-26 13:57:31,719 | INFO     | 
[2025-11-26 08:58:05] 2025-11-26 13:57:31,719 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 08:58:05] 2025-11-26 13:57:31,758 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 08:58:05] 2025-11-26 13:57:31,758 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 08:58:05] 2025-11-26 13:57:31,758 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 08:58:05] 2025-11-26 13:57:31,758 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 08:58:05] 2025-11-26 13:57:31,759 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 08:58:05] 2025-11-26 13:57:31,759 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 08:58:05] 2025-11-26 13:57:31,759 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 08:58:05] 2025-11-26 13:57:31,759 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 08:58:05] 2025-11-26 13:57:31,759 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 08:58:05] 2025-11-26 13:57:31,759 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 08:58:05] 2025-11-26 13:57:31,759 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 08:58:05] 2025-11-26 13:57:31,759 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 08:58:05] 2025-11-26 13:57:31,759 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 08:58:05] 2025-11-26 13:57:31,759 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 08:58:05] 2025-11-26 13:57:31,759 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 08:58:05] 2025-11-26 13:57:31,759 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 08:58:05] 2025-11-26 13:57:31,760 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 08:58:05] 2025-11-26 13:57:31,760 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 08:58:05] 2025-11-26 13:57:31,760 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 08:58:05] 2025-11-26 13:57:31,760 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 08:58:05] 2025-11-26 13:57:31,760 | INFO     | job 6895356436 has completed (purged errors)
[2025-11-26 08:58:05] 2025-11-26 13:57:31,760 | INFO     | overall cleanup function is called
[2025-11-26 08:58:05] 2025-11-26 13:57:32,784 | INFO     | --- collectZombieJob: --- 10, [3448581]
[2025-11-26 08:58:05] 2025-11-26 13:57:32,784 | INFO     | zombie collector waiting for pid 3448581
[2025-11-26 08:58:05] 2025-11-26 13:57:32,784 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 08:58:05] 2025-11-26 13:57:32,784 | INFO     | collected zombie processes
[2025-11-26 08:58:05] 2025-11-26 13:57:32,784 | INFO     | will attempt to kill all subprocesses of pid=3448581
[2025-11-26 08:58:05] 2025-11-26 13:57:34,136 | INFO     | process IDs to be killed: [3448581] (in reverse order)
[2025-11-26 08:58:05] 2025-11-26 13:57:34,266 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 08:58:05] 2025-11-26 13:57:34,267 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 08:58:05] 2025-11-26 13:57:34,295 | INFO     | did not find any defunct processes belonging to 3448581
[2025-11-26 08:58:05] 2025-11-26 13:57:34,311 | INFO     | did not find any defunct processes belonging to 3448581
[2025-11-26 08:58:05] 2025-11-26 13:57:34,313 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 08:58:05] 2025-11-26 13:57:34,313 | INFO     | ready for new job
[2025-11-26 08:58:05] 2025-11-26 13:57:34,313 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 08:58:05] 2025-11-26 13:57:34,324 | INFO     | ***************************************
[2025-11-26 08:58:05] 2025-11-26 13:57:34,324 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 08:58:05] 2025-11-26 13:57:34,325 | INFO     | ***************************************
[2025-11-26 08:58:05] 2025-11-26 13:57:34,325 | INFO     | 
[2025-11-26 08:58:05] 2025-11-26 13:57:34,331 | INFO     | architecture information:
[2025-11-26 08:58:05] 2025-11-26 13:57:34,331 | INFO     | executing command: cat /etc/os-release
[2025-11-26 08:58:05] 2025-11-26 13:57:34,394 | INFO     | cat /etc/os-release:
[2025-11-26 08:58:05] NAME="CentOS Linux"
[2025-11-26 08:58:05] VERSION="7 (Core)"
[2025-11-26 08:58:05] ID="centos"
[2025-11-26 08:58:05] ID_LIKE="rhel fedora"
[2025-11-26 08:58:05] VERSION_ID="7"
[2025-11-26 08:58:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 08:58:05] ANSI_COLOR="0;31"
[2025-11-26 08:58:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 08:58:05] HOME_URL="https://www.centos.org/"
[2025-11-26 08:58:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 08:58:05] 
[2025-11-26 08:58:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 08:58:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 08:58:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 08:58:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 08:58:05] 
[2025-11-26 08:58:05] 2025-11-26 13:57:34,394 | INFO     | ***************************************
[2025-11-26 08:58:05] 2025-11-26 13:57:34,898 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 08:58:05] 2025-11-26 13:57:34,987 | INFO     | sufficient remaining disk space (116705460224 B)
[2025-11-26 08:58:05] 2025-11-26 13:57:34,988 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 08:58:05] 2025-11-26 13:57:34,988 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 08:58:05] 2025-11-26 13:57:34,988 | INFO     | update_server=False
[2025-11-26 08:58:05] 2025-11-26 13:57:34,988 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 08:58:05] 2025-11-26 13:57:34,988 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:58:05] 2025-11-26 13:57:34,988 | INFO     | aborting loop
[2025-11-26 08:58:05] 2025-11-26 13:57:34,989 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 08:58:05] 2025-11-26 13:57:35,305 | INFO     | all data control threads have been joined
[2025-11-26 08:58:05] 2025-11-26 13:57:35,994 | INFO     | [job] retrieve thread has finished
[2025-11-26 08:58:05] 2025-11-26 13:57:35,995 | INFO     | [job] job monitor thread has finished
[2025-11-26 08:58:05] 2025-11-26 13:57:36,070 | INFO     | all job control threads have been joined
[2025-11-26 08:58:05] 2025-11-26 13:57:36,234 | INFO     | [payload] validate_post thread has finished
[2025-11-26 08:58:05] 2025-11-26 13:57:36,264 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 08:58:05] 2025-11-26 13:57:36,289 | INFO     | all payload control threads have been joined
[2025-11-26 08:58:05] 2025-11-26 13:57:36,311 | INFO     | [data] control thread has finished
[2025-11-26 08:58:05] 2025-11-26 13:57:36,407 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 08:58:05] 2025-11-26 13:57:36,407 | INFO     | [job] validate thread has finished
[2025-11-26 08:58:05] 2025-11-26 13:57:36,408 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 08:58:05] 2025-11-26 13:57:36,408 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 08:58:05] 2025-11-26 13:57:36,550 | INFO     | [payload] failed_post thread has finished
[2025-11-26 08:58:05] 2025-11-26 13:57:36,767 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:58:05] 2025-11-26 13:57:36,895 | INFO     | [data] copytool_in thread has finished
[2025-11-26 08:58:05] 2025-11-26 13:57:37,076 | INFO     | [job] control thread has finished
[2025-11-26 08:58:05] 2025-11-26 13:57:37,295 | INFO     | [payload] control thread has finished
[2025-11-26 08:58:05] 2025-11-26 13:57:37,343 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 08:58:05] 2025-11-26 13:57:37,773 | INFO     | [job] queue monitor thread has finished
[2025-11-26 08:58:05] 2025-11-26 13:57:38,270 | INFO     | [data] copytool_out thread has finished
[2025-11-26 08:58:05] 2025-11-26 13:57:39,001 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 08:58:05] 2025-11-26 13:57:57,629 | INFO     | [monitor] cgroup control has ended
[2025-11-26 08:58:05] 2025-11-26 13:57:59,165 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139652784219968)>', '<ExcThread(monitor, started 139652430276352)>']
[2025-11-26 08:58:05] 2025-11-26 13:58:04,201 | INFO     | all workflow threads have been joined
[2025-11-26 08:58:05] 2025-11-26 13:58:04,202 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 08:58:05] 2025-11-26 13:58:04,202 | INFO     | traces error code: 0
[2025-11-26 08:58:05] 2025-11-26 13:58:04,203 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 08:58:05] 2025-11-26 13:58:04,286 | INFO     | PID=3414551 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 08:58:05] 2025-11-26 13:58:04,287 | INFO     | .. there are 20 such processes running
[2025-11-26 08:58:05] 2025-11-26 13:58:04,288 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 08:58:05] 2025-11-26 13:58:04,288 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 08:58:05] 2025-11-26 13:58:04,288 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 08:58:05] 2025-11-26 13:58:04,288 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 08:58:05] 2025-11-26 13:58:04,288 | INFO     | [monitor] control thread has ended
[2025-11-26 08:58:05] 2025-11-26 13:58:04,480 [wrapper] ==== pilot stdout END ====
[2025-11-26 08:58:05] 2025-11-26 13:58:04,482 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 08:58:05] 2025-11-26 13:58:04,485 [wrapper] pilotpid: 3414551
[2025-11-26 08:58:05] 2025-11-26 13:58:04,487 [wrapper] Pilot exit status: 0
[2025-11-26 08:58:05] 2025-11-26 13:58:04,554 [wrapper] pandaids: 6895356436 6895356436
[2025-11-26 08:58:05] 2025-11-26 13:58:04,682 [wrapper] cleanup supervisor_pilot  379890 3414552
[2025-11-26 08:58:05] 2025-11-26 13:58:04,687 [wrapper] Test setup, not cleaning
[2025-11-26 08:58:05] 2025-11-26 13:58:04,690 [wrapper] apfmon messages muted
[2025-11-26 08:58:05] 2025-11-26 13:58:04,693 [wrapper] ==== wrapper stdout END ====
[2025-11-26 08:58:05] 2025-11-26 13:58:04,696 [wrapper] ==== wrapper stderr END ====
[2025-11-26 08:58:05]  *** Error codes and diagnostics ***
[2025-11-26 08:58:05]     "exeErrorCode": 0,
[2025-11-26 08:58:05]     "exeErrorDiag": "",
[2025-11-26 08:58:05]     "pilotErrorCode": 0,
[2025-11-26 08:58:05]     "pilotErrorDiag": "",
[2025-11-26 08:58:05]  *** Listing of results directory ***
[2025-11-26 08:58:05] total 1736452
[2025-11-26 08:58:05] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 08:58:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 06:12 pilot3.tar.gz
[2025-11-26 08:58:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 06:12 queuedata.json
[2025-11-26 08:58:05] -rwx------. 1 boincer umatlas     36292 Nov 23 06:15 runpilot2-wrapper.sh
[2025-11-26 08:58:05] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 08:58:05] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:10 run_atlas
[2025-11-26 08:58:05] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:10 job.xml
[2025-11-26 08:58:05] -rw-r--r--. 3 boincer umatlas 409483202 Nov 24 00:10 EVNT.47483658._000701.pool.root.1
[2025-11-26 08:58:05] -rw-r--r--. 3 boincer umatlas 409483202 Nov 24 00:10 ATLAS.root_0
[2025-11-26 08:58:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:10 start_atlas.sh
[2025-11-26 08:58:05] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:10 shared
[2025-11-26 08:58:05] -rw-r--r--. 2 boincer umatlas    590107 Nov 24 00:10 input.tar.gz
[2025-11-26 08:58:05] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:10 boinc_lockfile
[2025-11-26 08:58:05] -rw-r--r--. 1 boincer umatlas      2786 Nov 24 10:49 pandaJob.out
[2025-11-26 08:58:05] -rw-------. 1 boincer umatlas        57 Nov 24 10:49 setup.sh.local
[2025-11-26 08:58:05] -rw-------. 1 boincer umatlas    987541 Nov 24 10:50 agis_schedconf.cvmfs.json
[2025-11-26 08:58:05] -rw-r--r--. 1 boincer umatlas       534 Nov 26 08:05 boinc_task_state.xml
[2025-11-26 08:58:05] -rw-r--r--. 1 boincer umatlas      6882 Nov 26 08:45 init_data.xml
[2025-11-26 08:58:05] -rw-------. 1 boincer umatlas 906168891 Nov 26 08:50 HITS.47556137._006966.pool.root.1
[2025-11-26 08:58:05] -rw-------. 1 boincer umatlas      1076 Nov 26 08:56 memory_monitor_summary.json
[2025-11-26 08:58:05] -rw-------. 1 boincer umatlas   1516240 Nov 26 08:56 agis_ddmendpoints.agis.ALL.json
[2025-11-26 08:58:05] -rw-------. 1 boincer umatlas   3397012 Nov 26 08:57 log.47556137._006966.job.log.tgz.1
[2025-11-26 08:58:05] -rw-------. 1 boincer umatlas      8661 Nov 26 08:57 heartbeat.json
[2025-11-26 08:58:05] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 08:58 boinc_mmap_file
[2025-11-26 08:58:05] -rw-r--r--. 1 boincer umatlas        30 Nov 26 08:58 wrapper_checkpoint.txt
[2025-11-26 08:58:05] -rw-------. 1 boincer umatlas        96 Nov 26 08:58 pilot_heartbeat.json
[2025-11-26 08:58:05] -rw-------. 1 boincer umatlas       823 Nov 26 08:58 pilotlog.txt
[2025-11-26 08:58:05] -rw-------. 1 boincer umatlas  21136235 Nov 26 08:58 log.47556137._006966.job.log.1
[2025-11-26 08:58:05] -rw-------. 1 boincer umatlas       353 Nov 26 08:58 output.list
[2025-11-26 08:58:05] -rw-r--r--. 1 boincer umatlas       620 Nov 26 08:58 runtime_log
[2025-11-26 08:58:05] -rw-------. 1 boincer umatlas  24555520 Nov 26 08:58 result.tar.gz
[2025-11-26 08:58:05] -rw-r--r--. 1 boincer umatlas      9439 Nov 26 08:58 runtime_log.err
[2025-11-26 08:58:05] -rw-------. 1 boincer umatlas       796 Nov 26 08:58 MvVNDm1ENh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHpKKDmYfoNJn.diag
[2025-11-26 08:58:05] -rw-r--r--. 1 boincer umatlas     24062 Nov 26 08:58 stderr.txt
[2025-11-26 08:58:05] HITS file was successfully produced:
[2025-11-26 08:58:05] -rw-------. 1 boincer umatlas 906168891 Nov 26 08:50 shared/HITS.pool.root.1
[2025-11-26 08:58:05]  *** Contents of shared directory: ***
[2025-11-26 08:58:05] total 1309404
[2025-11-26 08:58:05] -rw-r--r--. 3 boincer umatlas 409483202 Nov 24 00:10 ATLAS.root_0
[2025-11-26 08:58:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:10 start_atlas.sh
[2025-11-26 08:58:05] -rw-r--r--. 2 boincer umatlas    590107 Nov 24 00:10 input.tar.gz
[2025-11-26 08:58:05] -rw-------. 1 boincer umatlas 906168891 Nov 26 08:50 HITS.pool.root.1
[2025-11-26 08:58:05] -rw-------. 1 boincer umatlas  24555520 Nov 26 08:58 result.tar.gz
08:58:06 (3390740): run_atlas exited; CPU time 280061.799524
08:58:06 (3390740): called boinc_finish(0)

</stderr_txt>
]]>

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