Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:52:36 (2796086): wrapper (7.7.26015): starting
02:52:36 (2796086): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 02:52:37] Arguments: --nthreads 8
[2025-11-24 02:52:37] Threads: 8
[2025-11-24 02:52:37] Checking for CVMFS
[2025-11-24 02:52:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 02:52:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 02:52:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 02:52:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 02:52:38] 2.13.3.0 15733 25456 349172 153238 2 330 18002664 32935937 25580 16776704 0 135842785 99.713 98395881 26628 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 02:52:38] CVMFS is ok
[2025-11-24 02:52:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 02:52:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 02:52:38] Further information can be found at the LHC@home message board.
[2025-11-24 02:52:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 02:52:38] Checking for apptainer binary...
[2025-11-24 02:52:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 02:52:38] Running /usr/bin/apptainer --version
[2025-11-24 02:52:38] apptainer version 1.4.4-1.el9
[2025-11-24 02:52:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 02:52:39] c-8-39.aglt2.org
[2025-11-24 02:52:39] apptainer works
[2025-11-24 02:52:39] Set ATHENA_PROC_NUMBER=8
[2025-11-24 02:52:39] Set ATHENA_CORE_NUMBER=8
[2025-11-24 02:52:39] Starting ATLAS job with PandaID=6895369030
[2025-11-24 02:52:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 04:11:32]  *** The last 200 lines of the pilot log: ***
[2025-11-25 04:11:32] 2025-11-25 09:10:56,570 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895369030/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 04:11:32] 2025-11-25 09:10:56,571 | INFO     | extracted standard info from prmon json
[2025-11-25 04:11:32] 2025-11-25 09:10:56,571 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 04:11:32] 2025-11-25 09:10:56,571 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 04:11:32] 2025-11-25 09:10:56,598 | INFO     | fitting pss+swap vs Time
[2025-11-25 04:11:32] 2025-11-25 09:10:56,601 | INFO     | sum of square deviations: 1025734645239.275
[2025-11-25 04:11:32] 2025-11-25 09:10:56,626 | INFO     | monitor loop #5678: job 0:6895369030 is in state 'finished'
[2025-11-25 04:11:32] 2025-11-25 09:10:56,627 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 04:11:32] 2025-11-25 09:10:56,682 | INFO     | sum of deviations: 5272796384126.343
[2025-11-25 04:11:32] 2025-11-25 09:10:56,682 | INFO     | mean x: 1764016369.785235
[2025-11-25 04:11:32] 2025-11-25 09:10:56,683 | INFO     | mean y: 2948533.579194631
[2025-11-25 04:11:32] 2025-11-25 09:10:56,683 | INFO     | intersect: -9064990410.77959
[2025-11-25 04:11:32] 2025-11-25 09:10:56,685 | INFO     | chi2: 9.931694422628347
[2025-11-25 04:11:32] 2025-11-25 09:10:56,687 | INFO     | sum of square deviations: 1015443603783.4836
[2025-11-25 04:11:32] 2025-11-25 09:10:56,749 | INFO     | sum of deviations: 5805569124229.321
[2025-11-25 04:11:32] 2025-11-25 09:10:56,750 | INFO     | mean x: 1764016217.2895622
[2025-11-25 04:11:32] 2025-11-25 09:10:56,750 | INFO     | mean y: 2956428.1434343434
[2025-11-25 04:11:32] 2025-11-25 09:10:56,750 | INFO     | intersect: -10082407296.221243
[2025-11-25 04:11:32] 2025-11-25 09:10:56,777 | INFO     | chi2: 6.529547840122529
[2025-11-25 04:11:32] 2025-11-25 09:10:56,778 | INFO     | current chi2=6.529547840122529 (change=34.25544965171679 %)
[2025-11-25 04:11:32] 2025-11-25 09:10:56,780 | INFO     | sum of square deviations: 1005221633390.144
[2025-11-25 04:11:32] 2025-11-25 09:10:56,950 | INFO     | sum of deviations: 6122860789108.524
[2025-11-25 04:11:32] 2025-11-25 09:10:56,951 | INFO     | mean x: 1764016064.7939188
[2025-11-25 04:11:32] 2025-11-25 09:10:56,951 | INFO     | mean y: 2961158.4804054056
[2025-11-25 04:11:32] 2025-11-25 09:10:56,951 | INFO     | intersect: -10741758648.293013
[2025-11-25 04:11:32] 2025-11-25 09:10:56,961 | INFO     | chi2: 4.997442430560892
[2025-11-25 04:11:32] 2025-11-25 09:10:56,962 | INFO     | current chi2=4.997442430560892 (change=23.46418844115378 %)
[2025-11-25 04:11:32] 2025-11-25 09:10:56,962 | INFO     | right removable region: 1479
[2025-11-25 04:11:32] 2025-11-25 09:10:56,964 | INFO     | sum of square deviations: 1015442435633.4841
[2025-11-25 04:11:32] 2025-11-25 09:10:57,112 | INFO     | sum of deviations: 4712817390516.886
[2025-11-25 04:11:32] 2025-11-25 09:10:57,112 | INFO     | mean x: 1764016522.2895622
[2025-11-25 04:11:32] 2025-11-25 09:10:57,113 | INFO     | mean y: 2956829.27003367
[2025-11-25 04:11:32] 2025-11-25 09:10:57,113 | INFO     | intersect: -8184102773.19674
[2025-11-25 04:11:32] 2025-11-25 09:10:57,115 | INFO     | chi2: 6.502492413386251
[2025-11-25 04:11:32] 2025-11-25 09:10:57,115 | INFO     | current chi2=6.502492413386251 (change=34.527864665560095 %)
[2025-11-25 04:11:32] 2025-11-25 09:10:57,117 | INFO     | sum of square deviations: 1005219568237.9025
[2025-11-25 04:11:32] 2025-11-25 09:10:57,182 | INFO     | sum of deviations: 4448556930791.904
[2025-11-25 04:11:32] 2025-11-25 09:10:57,182 | INFO     | mean x: 1764016674.7918918
[2025-11-25 04:11:32] 2025-11-25 09:10:57,182 | INFO     | mean y: 2960768.525675676
[2025-11-25 04:11:32] 2025-11-25 09:10:57,182 | INFO     | intersect: -7803620850.686052
[2025-11-25 04:11:32] 2025-11-25 09:10:57,184 | INFO     | chi2: 5.754703278855912
[2025-11-25 04:11:32] 2025-11-25 09:10:57,184 | INFO     | current chi2=5.754703278855912 (change=11.500038554307498 %)
[2025-11-25 04:11:32] 2025-11-25 09:10:57,185 | INFO     | left removable region: 20
[2025-11-25 04:11:32] 2025-11-25 09:10:57,187 | INFO     | sum of square deviations: 963035038345.7024
[2025-11-25 04:11:32] 2025-11-25 09:10:57,232 | INFO     | time since job start (91039s) is within the limit (172800.0s)
[2025-11-25 04:11:32] 2025-11-25 09:10:57,244 | INFO     | sum of deviations: 5126330642404.957
[2025-11-25 04:11:32] 2025-11-25 09:10:57,244 | INFO     | mean x: 1764016644.3022618
[2025-11-25 04:11:32] 2025-11-25 09:10:57,244 | INFO     | mean y: 2977298.2858122
[2025-11-25 04:11:32] 2025-11-25 09:10:57,244 | INFO     | intersect: -9387057557.48949
[2025-11-25 04:11:32] 2025-11-25 09:10:57,254 | INFO     | chi2: 0.6092387166387498
[2025-11-25 04:11:32] 2025-11-25 09:10:57,255 | INFO     | current memory leak: 5.32 B/s (using 1459 data points, chi2=0.61)
[2025-11-25 04:11:32] 2025-11-25 09:10:57,256 | INFO     | could have reported an average CPU frequency of 2713 MHz (53 samples)
[2025-11-25 04:11:32] 2025-11-25 09:10:57,256 | INFO     | ..............................
[2025-11-25 04:11:32] 2025-11-25 09:10:57,257 | INFO     | . Timing measurements:
[2025-11-25 04:11:32] 2025-11-25 09:10:57,257 | INFO     | . get job = 0 s
[2025-11-25 04:11:32] 2025-11-25 09:10:57,257 | INFO     | . initial setup = 6 s
[2025-11-25 04:11:32] 2025-11-25 09:10:57,257 | INFO     | . payload setup = 34 s
[2025-11-25 04:11:32] 2025-11-25 09:10:57,257 | INFO     | . stage-in = 0 s
[2025-11-25 04:11:32] 2025-11-25 09:10:57,257 | INFO     | . payload execution = 90893 s
[2025-11-25 04:11:32] 2025-11-25 09:10:57,257 | INFO     | . stage-out = 9 s
[2025-11-25 04:11:32] 2025-11-25 09:10:57,258 | INFO     | . log creation = 1 s
[2025-11-25 04:11:32] 2025-11-25 09:10:57,258 | INFO     | ..............................
[2025-11-25 04:11:32] 2025-11-25 09:10:57,440 | INFO     | 
[2025-11-25 04:11:32] 2025-11-25 09:10:57,441 | INFO     | job summary report
[2025-11-25 04:11:32] 2025-11-25 09:10:57,441 | INFO     | --------------------------------------------------
[2025-11-25 04:11:32] 2025-11-25 09:10:57,441 | INFO     | PanDA job id: 6895369030
[2025-11-25 04:11:32] 2025-11-25 09:10:57,441 | INFO     | task id: 47556149
[2025-11-25 04:11:32] 2025-11-25 09:10:57,441 | INFO     | errors: (none)
[2025-11-25 04:11:32] 2025-11-25 09:10:57,441 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 04:11:32] 2025-11-25 09:10:57,442 | INFO     | pilot state: finished 
[2025-11-25 04:11:32] 2025-11-25 09:10:57,442 | INFO     | transexitcode: 0
[2025-11-25 04:11:32] 2025-11-25 09:10:57,442 | INFO     | exeerrorcode: 0
[2025-11-25 04:11:32] 2025-11-25 09:10:57,442 | INFO     | exeerrordiag: 
[2025-11-25 04:11:32] 2025-11-25 09:10:57,442 | INFO     | exitcode: 0
[2025-11-25 04:11:32] 2025-11-25 09:10:57,442 | INFO     | exitmsg: OK
[2025-11-25 04:11:32] 2025-11-25 09:10:57,442 | INFO     | cpuconsumptiontime: 337619 s
[2025-11-25 04:11:32] 2025-11-25 09:10:57,442 | INFO     | nevents: 1000
[2025-11-25 04:11:32] 2025-11-25 09:10:57,442 | INFO     | neventsw: 0
[2025-11-25 04:11:32] 2025-11-25 09:10:57,443 | INFO     | pid: 2809834
[2025-11-25 04:11:32] 2025-11-25 09:10:57,443 | INFO     | pgrp: 2809834
[2025-11-25 04:11:32] 2025-11-25 09:10:57,443 | INFO     | corecount: 8
[2025-11-25 04:11:32] 2025-11-25 09:10:57,443 | INFO     | event service: False
[2025-11-25 04:11:32] 2025-11-25 09:10:57,443 | INFO     | sizes: {0: 2297979, 1: 2298664, 2: 2298692, 3: 2298891, 14: 2298891, 25: 2298919, 36: 2299337, 47: 2299365, 90932: 2367721, 90943: 2377511, 90946: 2377567, 90965: 
[2025-11-25 04:11:32] 2025-11-25 09:10:57,443 | INFO     | --------------------------------------------------
[2025-11-25 04:11:32] 2025-11-25 09:10:57,443 | INFO     | 
[2025-11-25 04:11:32] 2025-11-25 09:10:57,443 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 04:11:32] 2025-11-25 09:10:57,493 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 04:11:32] 2025-11-25 09:10:57,494 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 04:11:32] 2025-11-25 09:10:57,494 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 04:11:32] 2025-11-25 09:10:57,494 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 04:11:32] 2025-11-25 09:10:57,494 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 04:11:32] 2025-11-25 09:10:57,494 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 04:11:32] 2025-11-25 09:10:57,495 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 04:11:32] 2025-11-25 09:10:57,495 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 04:11:32] 2025-11-25 09:10:57,495 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 04:11:32] 2025-11-25 09:10:57,495 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 04:11:32] 2025-11-25 09:10:57,495 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 04:11:32] 2025-11-25 09:10:57,495 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 04:11:32] 2025-11-25 09:10:57,495 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 04:11:32] 2025-11-25 09:10:57,496 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 04:11:32] 2025-11-25 09:10:57,496 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 04:11:32] 2025-11-25 09:10:57,496 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 04:11:32] 2025-11-25 09:10:57,496 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 04:11:32] 2025-11-25 09:10:57,496 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 04:11:32] 2025-11-25 09:10:57,496 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 04:11:32] 2025-11-25 09:10:57,496 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 04:11:32] 2025-11-25 09:10:57,497 | INFO     | job 6895369030 has completed (purged errors)
[2025-11-25 04:11:32] 2025-11-25 09:10:57,497 | INFO     | overall cleanup function is called
[2025-11-25 04:11:32] 2025-11-25 09:10:58,536 | INFO     | --- collectZombieJob: --- 10, [2809834]
[2025-11-25 04:11:32] 2025-11-25 09:10:58,537 | INFO     | zombie collector waiting for pid 2809834
[2025-11-25 04:11:32] 2025-11-25 09:10:58,537 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 04:11:32] 2025-11-25 09:10:58,537 | INFO     | collected zombie processes
[2025-11-25 04:11:32] 2025-11-25 09:10:58,537 | INFO     | will attempt to kill all subprocesses of pid=2809834
[2025-11-25 04:11:32] 2025-11-25 09:11:00,190 | INFO     | process IDs to be killed: [2809834] (in reverse order)
[2025-11-25 04:11:32] 2025-11-25 09:11:00,452 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 04:11:32] 2025-11-25 09:11:00,452 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 04:11:32] 2025-11-25 09:11:00,496 | INFO     | did not find any defunct processes belonging to 2809834
[2025-11-25 04:11:32] 2025-11-25 09:11:00,588 | INFO     | did not find any defunct processes belonging to 2809834
[2025-11-25 04:11:32] 2025-11-25 09:11:00,590 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 04:11:32] 2025-11-25 09:11:00,590 | INFO     | ready for new job
[2025-11-25 04:11:32] 2025-11-25 09:11:00,590 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 04:11:32] 2025-11-25 09:11:00,604 | INFO     | ***************************************
[2025-11-25 04:11:32] 2025-11-25 09:11:00,605 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 04:11:32] 2025-11-25 09:11:00,605 | INFO     | ***************************************
[2025-11-25 04:11:32] 2025-11-25 09:11:00,605 | INFO     | 
[2025-11-25 04:11:32] 2025-11-25 09:11:00,612 | INFO     | architecture information:
[2025-11-25 04:11:32] 2025-11-25 09:11:00,613 | INFO     | executing command: cat /etc/os-release
[2025-11-25 04:11:32] 2025-11-25 09:11:00,731 | INFO     | cat /etc/os-release:
[2025-11-25 04:11:32] NAME="CentOS Linux"
[2025-11-25 04:11:32] VERSION="7 (Core)"
[2025-11-25 04:11:32] ID="centos"
[2025-11-25 04:11:32] ID_LIKE="rhel fedora"
[2025-11-25 04:11:32] VERSION_ID="7"
[2025-11-25 04:11:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 04:11:32] ANSI_COLOR="0;31"
[2025-11-25 04:11:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 04:11:32] HOME_URL="https://www.centos.org/"
[2025-11-25 04:11:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 04:11:32] 
[2025-11-25 04:11:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 04:11:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 04:11:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 04:11:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 04:11:32] 
[2025-11-25 04:11:32] 2025-11-25 09:11:00,732 | INFO     | ***************************************
[2025-11-25 04:11:32] 2025-11-25 09:11:01,246 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 04:11:32] 2025-11-25 09:11:01,282 | INFO     | sufficient remaining disk space (71137492992 B)
[2025-11-25 04:11:32] 2025-11-25 09:11:01,282 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 04:11:32] 2025-11-25 09:11:01,283 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 04:11:32] 2025-11-25 09:11:01,283 | INFO     | update_server=False
[2025-11-25 04:11:32] 2025-11-25 09:11:01,283 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 04:11:32] 2025-11-25 09:11:01,283 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 04:11:32] 2025-11-25 09:11:01,329 | INFO     | all job control threads have been joined
[2025-11-25 04:11:32] 2025-11-25 09:11:01,434 | INFO     | all payload control threads have been joined
[2025-11-25 04:11:32] 2025-11-25 09:11:01,659 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 04:11:32] 2025-11-25 09:11:01,660 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 04:11:32] 2025-11-25 09:11:01,660 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:11:32] 2025-11-25 09:11:01,660 | INFO     | will abort loop
[2025-11-25 04:11:32] 2025-11-25 09:11:02,289 | INFO     | [job] retrieve thread has finished
[2025-11-25 04:11:32] 2025-11-25 09:11:02,335 | INFO     | [job] control thread has finished
[2025-11-25 04:11:32] 2025-11-25 09:11:02,351 | INFO     | all data control threads have been joined
[2025-11-25 04:11:32] 2025-11-25 09:11:02,440 | INFO     | [payload] control thread has finished
[2025-11-25 04:11:32] 2025-11-25 09:11:02,478 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:11:32] 2025-11-25 09:11:02,499 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 04:11:32] 2025-11-25 09:11:02,500 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 04:11:32] 2025-11-25 09:11:02,673 | INFO     | [job] job monitor thread has finished
[2025-11-25 04:11:32] 2025-11-25 09:11:02,920 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 04:11:32] 2025-11-25 09:11:03,046 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 04:11:32] 2025-11-25 09:11:03,291 | INFO     | [data] copytool_out thread has finished
[2025-11-25 04:11:32] 2025-11-25 09:11:03,310 | INFO     | [payload] validate_post thread has finished
[2025-11-25 04:11:32] 2025-11-25 09:11:03,365 | INFO     | [data] control thread has finished
[2025-11-25 04:11:32] 2025-11-25 09:11:03,460 | INFO     | [data] copytool_in thread has finished
[2025-11-25 04:11:32] 2025-11-25 09:11:03,484 | INFO     | [job] queue monitor thread has finished
[2025-11-25 04:11:32] 2025-11-25 09:11:03,617 | INFO     | [job] validate thread has finished
[2025-11-25 04:11:32] 2025-11-25 09:11:03,665 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 04:11:32] 2025-11-25 09:11:03,778 | INFO     | [payload] failed_post thread has finished
[2025-11-25 04:11:32] 2025-11-25 09:11:06,509 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 04:11:32] 2025-11-25 09:11:18,687 | INFO     | [monitor] cgroup control has ended
[2025-11-25 04:11:32] 2025-11-25 09:11:19,388 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140466493581120)>', '<ExcThread(monitor, started 140465487734528)>']
[2025-11-25 04:11:32] 2025-11-25 09:11:24,416 | INFO     | all workflow threads have been joined
[2025-11-25 04:11:32] 2025-11-25 09:11:24,417 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 04:11:32] 2025-11-25 09:11:24,417 | INFO     | traces error code: 0
[2025-11-25 04:11:32] 2025-11-25 09:11:24,417 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 04:11:32] 2025-11-25 09:11:31,612 | INFO     | PID=2801434 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 04:11:32] 2025-11-25 09:11:31,612 | INFO     | .. there are 51 such processes running
[2025-11-25 04:11:32] 2025-11-25 09:11:31,613 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 04:11:32] 2025-11-25 09:11:31,613 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 04:11:32] 2025-11-25 09:11:31,614 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 04:11:32] 2025-11-25 09:11:31,614 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 04:11:32] 2025-11-25 09:11:31,614 | INFO     | [monitor] control thread has ended
[2025-11-25 04:11:32] 2025-11-25 09:11:32,021 [wrapper] ==== pilot stdout END ====
[2025-11-25 04:11:32] 2025-11-25 09:11:32,023 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 04:11:32] 2025-11-25 09:11:32,025 [wrapper] pilotpid: 2801434
[2025-11-25 04:11:32] 2025-11-25 09:11:32,028 [wrapper] Pilot exit status: 0
[2025-11-25 04:11:32] 2025-11-25 09:11:32,049 [wrapper] pandaids: 6895369030
[2025-11-25 04:11:32] 2025-11-25 09:11:32,186 [wrapper] cleanup supervisor_pilot 3820722 2801435
[2025-11-25 04:11:32] 2025-11-25 09:11:32,189 [wrapper] Test setup, not cleaning
[2025-11-25 04:11:32] 2025-11-25 09:11:32,192 [wrapper] apfmon messages muted
[2025-11-25 04:11:32] 2025-11-25 09:11:32,196 [wrapper] ==== wrapper stdout END ====
[2025-11-25 04:11:32] 2025-11-25 09:11:32,198 [wrapper] ==== wrapper stderr END ====
[2025-11-25 04:11:32]  *** Error codes and diagnostics ***
[2025-11-25 04:11:32]     "exeErrorCode": 0,
[2025-11-25 04:11:32]     "exeErrorDiag": "",
[2025-11-25 04:11:32]     "pilotErrorCode": 0,
[2025-11-25 04:11:32]     "pilotErrorDiag": "",
[2025-11-25 04:11:32]  *** Listing of results directory ***
[2025-11-25 04:11:32] total 1328900
[2025-11-25 04:11:32] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 14:32 pilot3.tar.gz
[2025-11-25 04:11:32] -rwx------. 1 boincer umatlas     36292 Nov 23 14:51 runpilot2-wrapper.sh
[2025-11-25 04:11:32] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 14:51 queuedata.json
[2025-11-25 04:11:32] -rw-r--r--. 1 boincer umatlas       100 Nov 24 02:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 04:11:32] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 02:52 run_atlas
[2025-11-25 04:11:32] -rw-r--r--. 1 boincer umatlas       105 Nov 24 02:52 job.xml
[2025-11-25 04:11:32] -rw-r--r--. 2 boincer umatlas 410229360 Nov 24 02:52 EVNT.47483658._001189.pool.root.1
[2025-11-25 04:11:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 02:52 start_atlas.sh
[2025-11-25 04:11:32] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 02:52 shared
[2025-11-25 04:11:32] -rw-r--r--. 2 boincer umatlas    590106 Nov 24 02:52 input.tar.gz
[2025-11-25 04:11:32] -rw-r--r--. 1 boincer umatlas         0 Nov 24 02:52 boinc_lockfile
[2025-11-25 04:11:32] -rw-r--r--. 1 boincer umatlas      2786 Nov 24 02:52 pandaJob.out
[2025-11-25 04:11:32] -rw-------. 1 boincer umatlas        57 Nov 24 02:52 setup.sh.local
[2025-11-25 04:11:32] -rw-------. 1 boincer umatlas    989786 Nov 24 02:53 agis_schedconf.cvmfs.json
[2025-11-25 04:11:32] drwx------. 5 boincer umatlas      4096 Nov 24 02:53 pilot3
[2025-11-25 04:11:32] -rw-r--r--. 1 boincer umatlas       533 Nov 25 03:56 boinc_task_state.xml
[2025-11-25 04:11:32] -rw-r--r--. 1 boincer umatlas      6614 Nov 25 04:04 init_data.xml
[2025-11-25 04:11:32] -rw-------. 1 boincer umatlas 918096147 Nov 25 04:09 HITS.47556149._001753.pool.root.1
[2025-11-25 04:11:32] -rw-------. 1 boincer umatlas      1071 Nov 25 04:10 memory_monitor_summary.json
[2025-11-25 04:11:32] -rw-------. 1 boincer umatlas   1516240 Nov 25 04:10 agis_ddmendpoints.agis.ALL.json
[2025-11-25 04:11:32] -rw-------. 1 boincer umatlas   2535778 Nov 25 04:10 log.47556149._001753.job.log.tgz.1
[2025-11-25 04:11:32] -rw-------. 1 boincer umatlas      8626 Nov 25 04:10 heartbeat.json
[2025-11-25 04:11:32] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 04:11 boinc_mmap_file
[2025-11-25 04:11:32] -rw-r--r--. 1 boincer umatlas        29 Nov 25 04:11 wrapper_checkpoint.txt
[2025-11-25 04:11:32] -rw-------. 1 boincer umatlas        95 Nov 25 04:11 pilot_heartbeat.json
[2025-11-25 04:11:32] -rw-------. 1 boincer umatlas       823 Nov 25 04:11 pilotlog.txt
[2025-11-25 04:11:32] -rw-------. 1 boincer umatlas  11740554 Nov 25 04:11 log.47556149._001753.job.log.1
[2025-11-25 04:11:32] -rw-------. 1 boincer umatlas       353 Nov 25 04:11 output.list
[2025-11-25 04:11:32] -rw-r--r--. 1 boincer umatlas       620 Nov 25 04:11 runtime_log
[2025-11-25 04:11:32] -rw-------. 1 boincer umatlas  14295040 Nov 25 04:11 result.tar.gz
[2025-11-25 04:11:32] -rw-------. 1 boincer umatlas       658 Nov 25 04:11 ATFLDmpIVh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIjIKDmYHQ4No.diag
[2025-11-25 04:11:32] -rw-r--r--. 1 boincer umatlas      9333 Nov 25 04:11 runtime_log.err
[2025-11-25 04:11:32] -rw-r--r--. 1 boincer umatlas     21369 Nov 25 04:11 stderr.txt
[2025-11-25 04:11:32] HITS file was successfully produced:
[2025-11-25 04:11:32] -rw-------. 1 boincer umatlas 918096147 Nov 25 04:09 shared/HITS.pool.root.1
[2025-11-25 04:11:32]  *** Contents of shared directory: ***
[2025-11-25 04:11:32] total 1311760
[2025-11-25 04:11:32] -rw-r--r--. 2 boincer umatlas 410229360 Nov 24 02:52 ATLAS.root_0
[2025-11-25 04:11:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 02:52 start_atlas.sh
[2025-11-25 04:11:32] -rw-r--r--. 2 boincer umatlas    590106 Nov 24 02:52 input.tar.gz
[2025-11-25 04:11:32] -rw-------. 1 boincer umatlas 918096147 Nov 25 04:09 HITS.pool.root.1
[2025-11-25 04:11:32] -rw-------. 1 boincer umatlas  14295040 Nov 25 04:11 result.tar.gz
04:11:34 (2796086): run_atlas exited; CPU time 341761.901909
04:11:34 (2796086): called boinc_finish(0)

</stderr_txt>
]]>

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