Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:35 (2366549): wrapper (7.7.26015): starting
00:00:35 (2366549): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:00:35] Arguments: --nthreads 9
[2025-11-25 00:00:35] Threads: 9
[2025-11-25 00:00:35] Checking for CVMFS
[2025-11-25 00:00:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:00:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:00:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:00:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:00:37] 2.13.3.0 7109 28140 325688 153270 3 268 20692783 21042177 28225 16776704 0 120648829 99.480 153437639 31408 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:00:37] CVMFS is ok
[2025-11-25 00:00:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:00:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:00:37] Further information can be found at the LHC@home message board.
[2025-11-25 00:00:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:00:37] Checking for apptainer binary...
[2025-11-25 00:00:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:00:37] Running /usr/bin/apptainer --version
[2025-11-25 00:00:37] apptainer version 1.4.4-1.el9
[2025-11-25 00:00:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:00:37] c-16-11.aglt2.org
[2025-11-25 00:00:37] apptainer works
[2025-11-25 00:00:37] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:00:37] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:00:37] Starting ATLAS job with PandaID=6895369037
[2025-11-25 00:00:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 04:18:52]  *** The last 200 lines of the pilot log: ***
[2025-11-26 04:18:52] 2025-11-26 09:18:03,922 | INFO     | monitor loop #5452: job 0:6895369037 is in state 'finished'
[2025-11-26 04:18:52] 2025-11-26 09:18:03,923 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:18:52] 2025-11-26 09:18:06,564 | INFO     | PID=2371966 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 04:18:52] 2025-11-26 09:18:06,564 | INFO     | .. there are 43 such processes running
[2025-11-26 04:18:52] 2025-11-26 09:18:06,598 | INFO     | monitor loop #5453: job 0:6895369037 is in state 'finished'
[2025-11-26 04:18:52] 2025-11-26 09:18:06,598 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:18:52] 2025-11-26 09:18:07,565 | INFO     | time since job start (101807s) is within the limit (172800.0s)
[2025-11-26 04:18:52] 2025-11-26 09:18:09,119 | INFO     | monitor loop #5454: job 0:6895369037 is in state 'finished'
[2025-11-26 04:18:52] 2025-11-26 09:18:09,121 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:18:52] 2025-11-26 09:18:09,575 | INFO     | time since job start (101809s) is within the limit (172800.0s)
[2025-11-26 04:18:52] 2025-11-26 09:18:11,585 | INFO     | time since job start (101811s) is within the limit (172800.0s)
[2025-11-26 04:18:52] 2025-11-26 09:18:11,630 | INFO     | monitor loop #5455: job 0:6895369037 is in state 'finished'
[2025-11-26 04:18:52] 2025-11-26 09:18:11,630 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:18:52] 2025-11-26 09:18:13,643 | INFO     | time since job start (101813s) is within the limit (172800.0s)
[2025-11-26 04:18:52] 2025-11-26 09:18:14,154 | INFO     | monitor loop #5456: job 0:6895369037 is in state 'finished'
[2025-11-26 04:18:52] 2025-11-26 09:18:14,159 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:18:52] 2025-11-26 09:18:15,396 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 04:18:52] 2025-11-26 09:18:15,413 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2900.0320500000003
[2025-11-26 04:18:52] 2025-11-26 09:18:15,431 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895369037/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 04:18:52] 2025-11-26 09:18:15,432 | INFO     | extracted standard info from prmon json
[2025-11-26 04:18:52] 2025-11-26 09:18:15,432 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 04:18:52] 2025-11-26 09:18:15,432 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 04:18:52] 2025-11-26 09:18:15,556 | INFO     | fitting pss+swap vs Time
[2025-11-26 04:18:52] 2025-11-26 09:18:15,570 | INFO     | sum of square deviations: 1436420110218.0667
[2025-11-26 04:18:52] 2025-11-26 09:18:15,663 | INFO     | time since job start (101815s) is within the limit (172800.0s)
[2025-11-26 04:18:52] 2025-11-26 09:18:15,768 | INFO     | sum of deviations: 4134709548266.9395
[2025-11-26 04:18:52] 2025-11-26 09:18:15,768 | INFO     | mean x: 1764097775.0809839
[2025-11-26 04:18:52] 2025-11-26 09:18:15,768 | INFO     | mean y: 3140570.770845831
[2025-11-26 04:18:52] 2025-11-26 09:18:15,769 | INFO     | intersect: -5074783264.197242
[2025-11-26 04:18:52] 2025-11-26 09:18:15,779 | INFO     | chi2: 21.29287313626593
[2025-11-26 04:18:52] 2025-11-26 09:18:15,789 | INFO     | sum of square deviations: 1423534083319.707
[2025-11-26 04:18:52] 2025-11-26 09:18:15,999 | INFO     | sum of deviations: 4747123855411.652
[2025-11-26 04:18:52] 2025-11-26 09:18:16,000 | INFO     | mean x: 1764097622.584236
[2025-11-26 04:18:52] 2025-11-26 09:18:16,000 | INFO     | mean y: 3147817.223826715
[2025-11-26 04:18:52] 2025-11-26 09:18:16,000 | INFO     | intersect: -5879668762.70335
[2025-11-26 04:18:52] 2025-11-26 09:18:16,006 | INFO     | chi2: 17.972469234982185
[2025-11-26 04:18:52] 2025-11-26 09:18:16,007 | INFO     | current chi2=17.972469234982185 (change=15.59396836694831 %)
[2025-11-26 04:18:52] 2025-11-26 09:18:16,007 | INFO     | right removable region: 1661
[2025-11-26 04:18:52] 2025-11-26 09:18:16,013 | INFO     | sum of square deviations: 1423532984099.7083
[2025-11-26 04:18:52] 2025-11-26 09:18:16,178 | INFO     | sum of deviations: 3508895386498.469
[2025-11-26 04:18:52] 2025-11-26 09:18:16,179 | INFO     | mean x: 1764097927.584236
[2025-11-26 04:18:52] 2025-11-26 09:18:16,179 | INFO     | mean y: 3147974.1323706377
[2025-11-26 04:18:52] 2025-11-26 09:18:16,179 | INFO     | intersect: -4345212863.707034
[2025-11-26 04:18:52] 2025-11-26 09:18:16,185 | INFO     | chi2: 18.268129248460415
[2025-11-26 04:18:52] 2025-11-26 09:18:16,186 | INFO     | current chi2=18.268129248460415 (change=14.205428588468799 %)
[2025-11-26 04:18:52] 2025-11-26 09:18:16,186 | INFO     | left removable region: 10
[2025-11-26 04:18:52] 2025-11-26 09:18:16,188 | INFO     | sum of square deviations: 1395455114533.4417
[2025-11-26 04:18:52] 2025-11-26 09:18:16,344 | INFO     | sum of deviations: 4028941191320.55
[2025-11-26 04:18:52] 2025-11-26 09:18:16,345 | INFO     | mean x: 1764097897.08722
[2025-11-26 04:18:52] 2025-11-26 09:18:16,345 | INFO     | mean y: 3159104.0308903693
[2025-11-26 04:18:52] 2025-11-26 09:18:16,345 | INFO     | intersect: -5090123086.900041
[2025-11-26 04:18:52] 2025-11-26 09:18:16,351 | INFO     | chi2: 14.05266342676494
[2025-11-26 04:18:52] 2025-11-26 09:18:16,352 | INFO     | current memory leak: 2.89 B/s (using 1651 data points, chi2=14.05)
[2025-11-26 04:18:52] 2025-11-26 09:18:16,353 | INFO     | could have reported an average CPU frequency of 2900 MHz (59 samples)
[2025-11-26 04:18:52] 2025-11-26 09:18:16,353 | INFO     | ..............................
[2025-11-26 04:18:52] 2025-11-26 09:18:16,354 | INFO     | . Timing measurements:
[2025-11-26 04:18:52] 2025-11-26 09:18:16,354 | INFO     | . get job = 0 s
[2025-11-26 04:18:52] 2025-11-26 09:18:16,354 | INFO     | . initial setup = 6 s
[2025-11-26 04:18:52] 2025-11-26 09:18:16,354 | INFO     | . payload setup = 21 s
[2025-11-26 04:18:52] 2025-11-26 09:18:16,354 | INFO     | . stage-in = 0 s
[2025-11-26 04:18:52] 2025-11-26 09:18:16,354 | INFO     | . payload execution = 101683 s
[2025-11-26 04:18:52] 2025-11-26 09:18:16,355 | INFO     | . stage-out = 14 s
[2025-11-26 04:18:52] 2025-11-26 09:18:16,359 | INFO     | . log creation = 6 s
[2025-11-26 04:18:52] 2025-11-26 09:18:16,359 | INFO     | ..............................
[2025-11-26 04:18:52] 2025-11-26 09:18:17,312 | INFO     | 
[2025-11-26 04:18:52] 2025-11-26 09:18:17,313 | INFO     | job summary report
[2025-11-26 04:18:52] 2025-11-26 09:18:17,313 | INFO     | --------------------------------------------------
[2025-11-26 04:18:52] 2025-11-26 09:18:17,313 | INFO     | PanDA job id: 6895369037
[2025-11-26 04:18:52] 2025-11-26 09:18:17,313 | INFO     | task id: 47556149
[2025-11-26 04:18:52] 2025-11-26 09:18:17,314 | INFO     | errors: (none)
[2025-11-26 04:18:52] 2025-11-26 09:18:17,314 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 04:18:52] 2025-11-26 09:18:17,314 | INFO     | pilot state: finished 
[2025-11-26 04:18:52] 2025-11-26 09:18:17,314 | INFO     | transexitcode: 0
[2025-11-26 04:18:52] 2025-11-26 09:18:17,314 | INFO     | exeerrorcode: 0
[2025-11-26 04:18:52] 2025-11-26 09:18:17,314 | INFO     | exeerrordiag: 
[2025-11-26 04:18:52] 2025-11-26 09:18:17,315 | INFO     | exitcode: 0
[2025-11-26 04:18:52] 2025-11-26 09:18:17,315 | INFO     | exitmsg: OK
[2025-11-26 04:18:52] 2025-11-26 09:18:17,315 | INFO     | cpuconsumptiontime: 507329 s
[2025-11-26 04:18:52] 2025-11-26 09:18:17,315 | INFO     | nevents: 1000
[2025-11-26 04:18:52] 2025-11-26 09:18:17,315 | INFO     | neventsw: 0
[2025-11-26 04:18:52] 2025-11-26 09:18:17,316 | INFO     | pid: 2379692
[2025-11-26 04:18:52] 2025-11-26 09:18:17,316 | INFO     | pgrp: 2379692
[2025-11-26 04:18:52] 2025-11-26 09:18:17,316 | INFO     | corecount: 9
[2025-11-26 04:18:52] 2025-11-26 09:18:17,316 | INFO     | event service: False
[2025-11-26 04:18:52] 2025-11-26 09:18:17,316 | INFO     | sizes: {0: 2284139, 1: 2284338, 2: 2284366, 12: 2284366, 17: 2284656, 25: 2284684, 101707: 2355062, 101708: 2355061, 101724: 2364116, 101726: 2364172, 101769: 2364
[2025-11-26 04:18:52] 2025-11-26 09:18:17,316 | INFO     | --------------------------------------------------
[2025-11-26 04:18:52] 2025-11-26 09:18:17,317 | INFO     | 
[2025-11-26 04:18:52] 2025-11-26 09:18:17,317 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 04:18:52] 2025-11-26 09:18:17,634 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 04:18:52] 2025-11-26 09:18:17,634 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 04:18:52] 2025-11-26 09:18:17,634 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 04:18:52] 2025-11-26 09:18:17,634 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 04:18:52] 2025-11-26 09:18:17,635 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 04:18:52] 2025-11-26 09:18:17,635 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 04:18:52] 2025-11-26 09:18:17,635 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 04:18:52] 2025-11-26 09:18:17,635 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 04:18:52] 2025-11-26 09:18:17,635 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 04:18:52] 2025-11-26 09:18:17,635 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 04:18:52] 2025-11-26 09:18:17,636 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 04:18:52] 2025-11-26 09:18:17,636 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 04:18:52] 2025-11-26 09:18:17,636 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 04:18:52] 2025-11-26 09:18:17,636 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 04:18:52] 2025-11-26 09:18:17,636 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 04:18:52] 2025-11-26 09:18:17,637 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 04:18:52] 2025-11-26 09:18:17,638 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 04:18:52] 2025-11-26 09:18:17,638 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 04:18:52] 2025-11-26 09:18:17,638 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 04:18:52] 2025-11-26 09:18:17,638 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 04:18:52] 2025-11-26 09:18:17,639 | INFO     | job 6895369037 has completed (purged errors)
[2025-11-26 04:18:52] 2025-11-26 09:18:17,639 | INFO     | overall cleanup function is called
[2025-11-26 04:18:52] 2025-11-26 09:18:18,719 | INFO     | --- collectZombieJob: --- 10, [2379692]
[2025-11-26 04:18:52] 2025-11-26 09:18:18,719 | INFO     | zombie collector waiting for pid 2379692
[2025-11-26 04:18:52] 2025-11-26 09:18:18,719 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 04:18:52] 2025-11-26 09:18:18,720 | INFO     | collected zombie processes
[2025-11-26 04:18:52] 2025-11-26 09:18:18,720 | INFO     | will attempt to kill all subprocesses of pid=2379692
[2025-11-26 04:18:52] 2025-11-26 09:18:21,291 | INFO     | process IDs to be killed: [2379692] (in reverse order)
[2025-11-26 04:18:52] 2025-11-26 09:18:21,639 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 04:18:52] 2025-11-26 09:18:21,639 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 04:18:52] 2025-11-26 09:18:21,820 | INFO     | did not find any defunct processes belonging to 2379692
[2025-11-26 04:18:52] 2025-11-26 09:18:21,930 | INFO     | did not find any defunct processes belonging to 2379692
[2025-11-26 04:18:52] 2025-11-26 09:18:21,947 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 04:18:52] 2025-11-26 09:18:21,948 | INFO     | ready for new job
[2025-11-26 04:18:52] 2025-11-26 09:18:21,948 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 04:18:52] 2025-11-26 09:18:21,959 | INFO     | ***************************************
[2025-11-26 04:18:52] 2025-11-26 09:18:21,960 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 04:18:52] 2025-11-26 09:18:21,964 | INFO     | ***************************************
[2025-11-26 04:18:52] 2025-11-26 09:18:21,964 | INFO     | 
[2025-11-26 04:18:52] 2025-11-26 09:18:21,966 | INFO     | architecture information:
[2025-11-26 04:18:52] 2025-11-26 09:18:21,971 | INFO     | executing command: cat /etc/os-release
[2025-11-26 04:18:52] 2025-11-26 09:18:22,020 | INFO     | cat /etc/os-release:
[2025-11-26 04:18:52] NAME="CentOS Linux"
[2025-11-26 04:18:52] VERSION="7 (Core)"
[2025-11-26 04:18:52] ID="centos"
[2025-11-26 04:18:52] ID_LIKE="rhel fedora"
[2025-11-26 04:18:52] VERSION_ID="7"
[2025-11-26 04:18:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 04:18:52] ANSI_COLOR="0;31"
[2025-11-26 04:18:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 04:18:52] HOME_URL="https://www.centos.org/"
[2025-11-26 04:18:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 04:18:52] 
[2025-11-26 04:18:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 04:18:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 04:18:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 04:18:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 04:18:52] 
[2025-11-26 04:18:52] 2025-11-26 09:18:22,021 | INFO     | ***************************************
[2025-11-26 04:18:52] 2025-11-26 09:18:22,524 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 04:18:52] 2025-11-26 09:18:22,604 | INFO     | sufficient remaining disk space (49381638144 B)
[2025-11-26 04:18:52] 2025-11-26 09:18:22,605 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 04:18:52] 2025-11-26 09:18:22,605 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 04:18:52] 2025-11-26 09:18:22,605 | INFO     | update_server=False
[2025-11-26 04:18:52] 2025-11-26 09:18:22,605 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 04:18:52] 2025-11-26 09:18:22,606 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:18:52] 2025-11-26 09:18:22,646 | INFO     | all job control threads have been joined
[2025-11-26 04:18:52] 2025-11-26 09:18:22,819 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:18:52] 2025-11-26 09:18:22,819 | INFO     | aborting loop
[2025-11-26 04:18:52] 2025-11-26 09:18:23,198 | INFO     | all data control threads have been joined
[2025-11-26 04:18:52] 2025-11-26 09:18:23,211 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 04:18:52] 2025-11-26 09:18:23,611 | INFO     | [job] retrieve thread has finished
[2025-11-26 04:18:52] 2025-11-26 09:18:23,612 | INFO     | [job] queue monitor thread has finished
[2025-11-26 04:18:52] 2025-11-26 09:18:23,652 | INFO     | [job] control thread has finished
[2025-11-26 04:18:52] 2025-11-26 09:18:23,721 | INFO     | all payload control threads have been joined
[2025-11-26 04:18:52] 2025-11-26 09:18:23,739 | INFO     | [data] copytool_in thread has finished
[2025-11-26 04:18:52] 2025-11-26 09:18:23,842 | INFO     | [payload] failed_post thread has finished
[2025-11-26 04:18:52] 2025-11-26 09:18:23,851 | INFO     | [job] job monitor thread has finished
[2025-11-26 04:18:52] 2025-11-26 09:18:23,882 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 04:18:52] 2025-11-26 09:18:24,204 | INFO     | [data] control thread has finished
[2025-11-26 04:18:52] 2025-11-26 09:18:24,635 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 04:18:52] 2025-11-26 09:18:24,646 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 04:18:52] 2025-11-26 09:18:24,677 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 04:18:52] 2025-11-26 09:18:24,689 | INFO     | [job] validate thread has finished
[2025-11-26 04:18:52] 2025-11-26 09:18:24,727 | INFO     | [payload] control thread has finished
[2025-11-26 04:18:52] 2025-11-26 09:18:24,972 | INFO     | [payload] validate_post thread has finished
[2025-11-26 04:18:52] 2025-11-26 09:18:25,259 | INFO     | [data] copytool_out thread has finished
[2025-11-26 04:18:52] 2025-11-26 09:18:25,717 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 04:18:52] 2025-11-26 09:18:26,799 | INFO     | [monitor] cgroup control has ended
[2025-11-26 04:18:52] 2025-11-26 09:18:29,763 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 04:18:52] 2025-11-26 09:18:31,419 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140042003154752)>', '<ExcThread(monitor, started 140041653294848)>']
[2025-11-26 04:18:52] 2025-11-26 09:18:36,444 | INFO     | all workflow threads have been joined
[2025-11-26 04:18:52] 2025-11-26 09:18:36,444 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 04:18:52] 2025-11-26 09:18:36,445 | INFO     | traces error code: 0
[2025-11-26 04:18:52] 2025-11-26 09:18:36,445 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 04:18:52] 2025-11-26 09:18:50,973 | INFO     | PID=2371966 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 04:18:52] 2025-11-26 09:18:50,974 | INFO     | .. there are 43 such processes running
[2025-11-26 04:18:52] 2025-11-26 09:18:50,974 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 04:18:52] 2025-11-26 09:18:50,974 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 04:18:52] 2025-11-26 09:18:50,974 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 04:18:52] 2025-11-26 09:18:50,974 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 04:18:52] 2025-11-26 09:18:50,975 | INFO     | [monitor] control thread has ended
[2025-11-26 04:18:52] 2025-11-26 09:18:51,303 [wrapper] ==== pilot stdout END ====
[2025-11-26 04:18:52] 2025-11-26 09:18:51,314 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 04:18:52] 2025-11-26 09:18:51,338 [wrapper] pilotpid: 2371966
[2025-11-26 04:18:52] 2025-11-26 09:18:51,353 [wrapper] Pilot exit status: 0
[2025-11-26 04:18:52] 2025-11-26 09:18:51,467 [wrapper] pandaids: 6895369037
[2025-11-26 04:18:52] 2025-11-26 09:18:51,819 [wrapper] cleanup supervisor_pilot 4047618 2371967
[2025-11-26 04:18:52] 2025-11-26 09:18:51,833 [wrapper] Test setup, not cleaning
[2025-11-26 04:18:52] 2025-11-26 09:18:51,853 [wrapper] apfmon messages muted
[2025-11-26 04:18:52] 2025-11-26 09:18:51,868 [wrapper] ==== wrapper stdout END ====
[2025-11-26 04:18:52] 2025-11-26 09:18:51,885 [wrapper] ==== wrapper stderr END ====
[2025-11-26 04:18:52]  *** Error codes and diagnostics ***
[2025-11-26 04:18:52]     "exeErrorCode": 0,
[2025-11-26 04:18:52]     "exeErrorDiag": "",
[2025-11-26 04:18:52]     "pilotErrorCode": 0,
[2025-11-26 04:18:52]     "pilotErrorDiag": "",
[2025-11-26 04:18:52]  *** Listing of results directory ***
[2025-11-26 04:18:52] total 1341952
[2025-11-26 04:18:52] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 14:32 pilot3.tar.gz
[2025-11-26 04:18:52] -rwx------. 1 boincer umatlas     36292 Nov 23 14:51 runpilot2-wrapper.sh
[2025-11-26 04:18:52] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 14:51 queuedata.json
[2025-11-26 04:18:52] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 04:18:52] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:00 run_atlas
[2025-11-26 04:18:52] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:00 job.xml
[2025-11-26 04:18:52] -rw-r--r--. 2 boincer umatlas 410229360 Nov 25 00:00 EVNT.47483658._001189.pool.root.1
[2025-11-26 04:18:52] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:00 start_atlas.sh
[2025-11-26 04:18:52] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:00 shared
[2025-11-26 04:18:52] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 00:00 input.tar.gz
[2025-11-26 04:18:52] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:00 boinc_lockfile
[2025-11-26 04:18:52] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 00:00 pandaJob.out
[2025-11-26 04:18:52] -rw-------. 1 boincer umatlas        57 Nov 25 00:00 setup.sh.local
[2025-11-26 04:18:52] -rw-------. 1 boincer umatlas    991801 Nov 25 00:01 agis_schedconf.cvmfs.json
[2025-11-26 04:18:52] drwx------. 5 boincer umatlas      4096 Nov 25 00:01 pilot3
[2025-11-26 04:18:52] -rw-r--r--. 1 boincer umatlas       533 Nov 26 03:30 boinc_task_state.xml
[2025-11-26 04:18:52] -rw-r--r--. 1 boincer umatlas      6525 Nov 26 04:11 init_data.xml
[2025-11-26 04:18:52] -rw-------. 1 boincer umatlas 930646834 Nov 26 04:16 HITS.47556149._001760.pool.root.1
[2025-11-26 04:18:52] -rw-------. 1 boincer umatlas      1056 Nov 26 04:17 memory_monitor_summary.json
[2025-11-26 04:18:52] -rw-------. 1 boincer umatlas   1516240 Nov 26 04:17 agis_ddmendpoints.agis.ALL.json
[2025-11-26 04:18:52] -rw-------. 1 boincer umatlas   2694456 Nov 26 04:17 log.47556149._001760.job.log.tgz.1
[2025-11-26 04:18:52] -rw-------. 1 boincer umatlas        95 Nov 26 04:17 pilot_heartbeat.json
[2025-11-26 04:18:52] -rw-------. 1 boincer umatlas      8634 Nov 26 04:18 heartbeat.json
[2025-11-26 04:18:52] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 04:18 boinc_mmap_file
[2025-11-26 04:18:52] -rw-r--r--. 1 boincer umatlas        29 Nov 26 04:18 wrapper_checkpoint.txt
[2025-11-26 04:18:52] -rw-------. 1 boincer umatlas       823 Nov 26 04:18 pilotlog.txt
[2025-11-26 04:18:52] -rw-------. 1 boincer umatlas  11988884 Nov 26 04:18 log.47556149._001760.job.log.1
[2025-11-26 04:18:52] -rw-------. 1 boincer umatlas       353 Nov 26 04:18 output.list
[2025-11-26 04:18:52] -rw-r--r--. 1 boincer umatlas       620 Nov 26 04:18 runtime_log
[2025-11-26 04:18:52] -rw-------. 1 boincer umatlas  14704640 Nov 26 04:18 result.tar.gz
[2025-11-26 04:18:52] -rw-r--r--. 1 boincer umatlas      9339 Nov 26 04:18 runtime_log.err
[2025-11-26 04:18:52] -rw-------. 1 boincer umatlas       662 Nov 26 04:18 iFSLDmpIVh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPjIKDmwOjp5n.diag
[2025-11-26 04:18:52] -rw-r--r--. 1 boincer umatlas     21899 Nov 26 04:18 stderr.txt
[2025-11-26 04:18:52] HITS file was successfully produced:
[2025-11-26 04:18:52] -rw-------. 1 boincer umatlas 930646834 Nov 26 04:16 shared/HITS.pool.root.1
[2025-11-26 04:18:52]  *** Contents of shared directory: ***
[2025-11-26 04:18:52] total 1324416
[2025-11-26 04:18:52] -rw-r--r--. 2 boincer umatlas 410229360 Nov 25 00:00 ATLAS.root_0
[2025-11-26 04:18:52] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:00 start_atlas.sh
[2025-11-26 04:18:52] -rw-r--r--. 2 boincer umatlas    590102 Nov 25 00:00 input.tar.gz
[2025-11-26 04:18:52] -rw-------. 1 boincer umatlas 930646834 Nov 26 04:16 HITS.pool.root.1
[2025-11-26 04:18:52] -rw-------. 1 boincer umatlas  14704640 Nov 26 04:18 result.tar.gz
04:18:54 (2366549): run_atlas exited; CPU time 512378.625975
04:18:54 (2366549): called boinc_finish(0)

</stderr_txt>
]]>

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