Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:48:59 (2036190): wrapper (7.7.26015): starting
16:48:59 (2036190): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 16:48:59] Arguments: --nthreads 9
[2025-11-24 16:48:59] Threads: 9
[2025-11-24 16:48:59] Checking for CVMFS
[2025-11-24 16:48:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 16:48:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 16:48:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 16:49:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 16:49:00] 2.13.2.0 6465 31520 407360 153259 0 273 30881396 40960000 17026 16776704 0 96555718 99.583 95931551 37743 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 16:49:00] CVMFS is ok
[2025-11-24 16:49:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 16:49:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 16:49:00] Further information can be found at the LHC@home message board.
[2025-11-24 16:49:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 16:49:00] Checking for apptainer binary...
[2025-11-24 16:49:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 16:49:00] Running /usr/bin/apptainer --version
[2025-11-24 16:49:00] apptainer version 1.4.4-1.el9
[2025-11-24 16:49:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 16:49:00] c-206-40.aglt2.org
[2025-11-24 16:49:00] apptainer works
[2025-11-24 16:49:00] Set ATHENA_PROC_NUMBER=9
[2025-11-24 16:49:00] Set ATHENA_CORE_NUMBER=9
[2025-11-24 16:49:00] Starting ATLAS job with PandaID=6895369006
[2025-11-24 16:49:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:50:52]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:50:53] 2025-11-26 04:49:43,346 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3274.4066406250013
[2025-11-25 23:50:53] 2025-11-26 04:49:43,413 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895369006/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 23:50:53] 2025-11-26 04:49:43,414 | INFO     | extracted standard info from prmon json
[2025-11-25 23:50:53] 2025-11-26 04:49:43,414 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 23:50:53] 2025-11-26 04:49:43,414 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 23:50:53] 2025-11-26 04:49:43,579 | INFO     | fitting pss+swap vs Time
[2025-11-25 23:50:53] 2025-11-26 04:49:43,643 | INFO     | sum of square deviations: 1897348360446.2864
[2025-11-25 23:50:53] 2025-11-26 04:49:44,190 | INFO     | sum of deviations: 6188008513829.462
[2025-11-25 23:50:53] 2025-11-26 04:49:44,191 | INFO     | mean x: 1764076773.0984144
[2025-11-25 23:50:53] 2025-11-26 04:49:44,239 | INFO     | mean y: 3176697.0530344453
[2025-11-25 23:50:53] 2025-11-26 04:49:44,239 | INFO     | intersect: -5750180102.651447
[2025-11-25 23:50:53] 2025-11-26 04:49:44,241 | INFO     | chi2: 9.812633999930425
[2025-11-25 23:50:53] 2025-11-26 04:49:44,256 | INFO     | sum of square deviations: 1881835266278.6587
[2025-11-25 23:50:53] 2025-11-26 04:49:44,719 | INFO     | sum of deviations: 6936401754274.746
[2025-11-25 23:50:53] 2025-11-26 04:49:44,719 | INFO     | mean x: 1764076620.6178727
[2025-11-25 23:50:53] 2025-11-26 04:49:44,719 | INFO     | mean y: 3184051.933662281
[2025-11-25 23:50:53] 2025-11-26 04:49:44,719 | INFO     | intersect: -6499162027.554117
[2025-11-25 23:50:53] 2025-11-26 04:49:44,754 | INFO     | chi2: 6.042353377959668
[2025-11-25 23:50:53] 2025-11-26 04:49:44,755 | INFO     | current chi2=6.042353377959668 (change=38.422717305032364 %)
[2025-11-25 23:50:53] 2025-11-26 04:49:44,756 | INFO     | sum of square deviations: 1866406788650.1853
[2025-11-25 23:50:53] 2025-11-26 04:49:44,984 | INFO     | time since job start (111622s) is within the limit (172800.0s)
[2025-11-25 23:50:53] 2025-11-26 04:49:45,245 | INFO     | monitor loop #6850: job 0:6895369006 is in state 'finished'
[2025-11-25 23:50:53] 2025-11-26 04:49:45,245 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:50:53] 2025-11-26 04:49:45,382 | INFO     | sum of deviations: 7371573114194.142
[2025-11-25 23:50:53] 2025-11-26 04:49:45,382 | INFO     | mean x: 1764076468.1363387
[2025-11-25 23:50:53] 2025-11-26 04:49:45,382 | INFO     | mean y: 3188350.1083012642
[2025-11-25 23:50:53] 2025-11-26 04:49:45,382 | INFO     | intersect: -6964220225.0079
[2025-11-25 23:50:53] 2025-11-26 04:49:45,384 | INFO     | chi2: 4.454214205718303
[2025-11-25 23:50:53] 2025-11-26 04:49:45,384 | INFO     | current chi2=4.454214205718303 (change=26.283454026941317 %)
[2025-11-25 23:50:53] 2025-11-26 04:49:45,415 | INFO     | sum of square deviations: 1851061365302.2007
[2025-11-25 23:50:53] 2025-11-26 04:49:45,967 | INFO     | sum of deviations: 7496152757582.571
[2025-11-25 23:50:53] 2025-11-26 04:49:45,968 | INFO     | mean x: 1764076315.6471884
[2025-11-25 23:50:53] 2025-11-26 04:49:45,981 | INFO     | mean y: 3189587.610253583
[2025-11-25 23:50:53] 2025-11-26 04:49:45,981 | INFO     | intersect: -7140704064.973157
[2025-11-25 23:50:53] 2025-11-26 04:49:45,982 | INFO     | chi2: 4.2518038966458045
[2025-11-25 23:50:53] 2025-11-26 04:49:45,983 | INFO     | current chi2=4.2518038966458045 (change=4.544242816446617 %)
[2025-11-25 23:50:53] 2025-11-26 04:49:45,983 | INFO     | right removable region: 1813
[2025-11-25 23:50:53] 2025-11-26 04:49:45,984 | INFO     | sum of square deviations: 1881827457986.8936
[2025-11-25 23:50:53] 2025-11-26 04:49:46,476 | INFO     | sum of deviations: 5613174897645.809
[2025-11-25 23:50:53] 2025-11-26 04:49:46,476 | INFO     | mean x: 1764076925.6173246
[2025-11-25 23:50:53] 2025-11-26 04:49:46,477 | INFO     | mean y: 3182342.012609649
[2025-11-25 23:50:53] 2025-11-26 04:49:46,477 | INFO     | intersect: -5258762516.090489
[2025-11-25 23:50:53] 2025-11-26 04:49:46,478 | INFO     | chi2: 7.419166255743438
[2025-11-25 23:50:53] 2025-11-26 04:49:46,478 | INFO     | current chi2=7.419166255743438 (change=24.391694872181695 %)
[2025-11-25 23:50:53] 2025-11-26 04:49:46,478 | INFO     | left removable region: 10
[2025-11-25 23:50:53] 2025-11-26 04:49:46,484 | INFO     | sum of square deviations: 1817586507811.4983
[2025-11-25 23:50:53] 2025-11-26 04:49:46,886 | INFO     | sum of deviations: 6774427263537.069
[2025-11-25 23:50:53] 2025-11-26 04:49:46,946 | INFO     | mean x: 1764076590.1846921
[2025-11-25 23:50:53] 2025-11-26 04:49:46,946 | INFO     | mean y: 3197095.690515807
[2025-11-25 23:50:53] 2025-11-26 04:49:46,946 | INFO     | intersect: -6571790392.472597
[2025-11-25 23:50:53] 2025-11-26 04:49:46,948 | INFO     | chi2: 1.7394762269394841
[2025-11-25 23:50:53] 2025-11-26 04:49:46,948 | INFO     | current memory leak: 3.73 B/s (using 1803 data points, chi2=1.74)
[2025-11-25 23:50:53] 2025-11-26 04:49:46,951 | INFO     | could have reported an average CPU frequency of 3267 MHz (64 samples)
[2025-11-25 23:50:53] 2025-11-26 04:49:46,951 | INFO     | ..............................
[2025-11-25 23:50:53] 2025-11-26 04:49:46,951 | INFO     | . Timing measurements:
[2025-11-25 23:50:53] 2025-11-26 04:49:46,952 | INFO     | . get job = 0 s
[2025-11-25 23:50:53] 2025-11-26 04:49:46,952 | INFO     | . initial setup = 2 s
[2025-11-25 23:50:53] 2025-11-26 04:49:46,952 | INFO     | . payload setup = 15 s
[2025-11-25 23:50:53] 2025-11-26 04:49:46,952 | INFO     | . stage-in = 0 s
[2025-11-25 23:50:53] 2025-11-26 04:49:46,952 | INFO     | . payload execution = 111521 s
[2025-11-25 23:50:53] 2025-11-26 04:49:46,952 | INFO     | . stage-out = 10 s
[2025-11-25 23:50:53] 2025-11-26 04:49:46,952 | INFO     | . log creation = 3 s
[2025-11-25 23:50:53] 2025-11-26 04:49:46,952 | INFO     | ..............................
[2025-11-25 23:50:53] 2025-11-26 04:49:47,108 | INFO     | time since job start (111625s) is within the limit (172800.0s)
[2025-11-25 23:50:53] 2025-11-26 04:49:47,611 | INFO     | 
[2025-11-25 23:50:53] 2025-11-26 04:49:47,612 | INFO     | job summary report
[2025-11-25 23:50:53] 2025-11-26 04:49:47,612 | INFO     | --------------------------------------------------
[2025-11-25 23:50:53] 2025-11-26 04:49:47,612 | INFO     | PanDA job id: 6895369006
[2025-11-25 23:50:53] 2025-11-26 04:49:47,612 | INFO     | task id: 47556137
[2025-11-25 23:50:53] 2025-11-26 04:49:47,612 | INFO     | errors: (none)
[2025-11-25 23:50:53] 2025-11-26 04:49:47,612 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 23:50:53] 2025-11-26 04:49:47,613 | INFO     | pilot state: finished 
[2025-11-25 23:50:53] 2025-11-26 04:49:47,613 | INFO     | transexitcode: 0
[2025-11-25 23:50:53] 2025-11-26 04:49:47,613 | INFO     | exeerrorcode: 0
[2025-11-25 23:50:53] 2025-11-26 04:49:47,613 | INFO     | exeerrordiag: 
[2025-11-25 23:50:53] 2025-11-26 04:49:47,613 | INFO     | exitcode: 0
[2025-11-25 23:50:53] 2025-11-26 04:49:47,613 | INFO     | exitmsg: OK
[2025-11-25 23:50:53] 2025-11-26 04:49:47,613 | INFO     | cpuconsumptiontime: 203735 s
[2025-11-25 23:50:53] 2025-11-26 04:49:47,613 | INFO     | nevents: 1000
[2025-11-25 23:50:53] 2025-11-26 04:49:47,613 | INFO     | neventsw: 0
[2025-11-25 23:50:53] 2025-11-26 04:49:47,613 | INFO     | pid: 2048622
[2025-11-25 23:50:53] 2025-11-26 04:49:47,613 | INFO     | pgrp: 2048622
[2025-11-25 23:50:53] 2025-11-26 04:49:47,613 | INFO     | corecount: 9
[2025-11-25 23:50:53] 2025-11-26 04:49:47,613 | INFO     | event service: False
[2025-11-25 23:50:53] 2025-11-26 04:49:47,613 | INFO     | sizes: {0: 2284309, 8: 2284571, 11: 2284599, 111539: 2360911, 111540: 2360910, 111551: 2369965, 111552: 2370149, 111604: 2370395}
[2025-11-25 23:50:53] 2025-11-26 04:49:47,613 | INFO     | --------------------------------------------------
[2025-11-25 23:50:53] 2025-11-26 04:49:47,613 | INFO     | 
[2025-11-25 23:50:53] 2025-11-26 04:49:47,614 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 23:50:53] 2025-11-26 04:49:47,771 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 23:50:53] 2025-11-26 04:49:47,772 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 23:50:53] 2025-11-26 04:49:47,772 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 23:50:53] 2025-11-26 04:49:47,772 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 23:50:53] 2025-11-26 04:49:47,772 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 23:50:53] 2025-11-26 04:49:47,772 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 23:50:53] 2025-11-26 04:49:47,772 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 23:50:53] 2025-11-26 04:49:47,772 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 23:50:53] 2025-11-26 04:49:47,772 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 23:50:53] 2025-11-26 04:49:47,772 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 23:50:53] 2025-11-26 04:49:47,772 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 23:50:53] 2025-11-26 04:49:47,791 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 23:50:53] 2025-11-26 04:49:47,791 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 23:50:53] 2025-11-26 04:49:47,791 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 23:50:53] 2025-11-26 04:49:47,791 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 23:50:53] 2025-11-26 04:49:47,791 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 23:50:53] 2025-11-26 04:49:47,791 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 23:50:53] 2025-11-26 04:49:47,792 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 23:50:53] 2025-11-26 04:49:47,792 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 23:50:53] 2025-11-26 04:49:47,792 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 23:50:53] 2025-11-26 04:49:47,792 | INFO     | job 6895369006 has completed (purged errors)
[2025-11-25 23:50:53] 2025-11-26 04:49:47,792 | INFO     | overall cleanup function is called
[2025-11-25 23:50:53] 2025-11-26 04:49:48,893 | INFO     | --- collectZombieJob: --- 10, [2048622]
[2025-11-25 23:50:53] 2025-11-26 04:49:48,893 | INFO     | zombie collector waiting for pid 2048622
[2025-11-25 23:50:53] 2025-11-26 04:49:48,894 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 23:50:53] 2025-11-26 04:49:48,894 | INFO     | collected zombie processes
[2025-11-25 23:50:53] 2025-11-26 04:49:48,894 | INFO     | will attempt to kill all subprocesses of pid=2048622
[2025-11-25 23:50:53] 2025-11-26 04:49:50,878 | INFO     | process IDs to be killed: [2048622] (in reverse order)
[2025-11-25 23:50:53] 2025-11-26 04:49:51,129 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 23:50:53] 2025-11-26 04:49:51,129 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 23:50:53] 2025-11-26 04:49:51,249 | INFO     | did not find any defunct processes belonging to 2048622
[2025-11-25 23:50:53] 2025-11-26 04:49:51,374 | INFO     | did not find any defunct processes belonging to 2048622
[2025-11-25 23:50:53] 2025-11-26 04:49:51,408 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 23:50:53] 2025-11-26 04:49:51,408 | INFO     | ready for new job
[2025-11-25 23:50:53] 2025-11-26 04:49:51,408 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 23:50:53] 2025-11-26 04:49:51,417 | INFO     | ***************************************
[2025-11-25 23:50:53] 2025-11-26 04:49:51,417 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 23:50:53] 2025-11-26 04:49:51,417 | INFO     | ***************************************
[2025-11-25 23:50:53] 2025-11-26 04:49:51,417 | INFO     | 
[2025-11-25 23:50:53] 2025-11-26 04:49:51,421 | INFO     | architecture information:
[2025-11-25 23:50:53] 2025-11-26 04:49:51,422 | INFO     | executing command: cat /etc/os-release
[2025-11-25 23:50:53] 2025-11-26 04:49:51,444 | INFO     | cat /etc/os-release:
[2025-11-25 23:50:53] NAME="CentOS Linux"
[2025-11-25 23:50:53] VERSION="7 (Core)"
[2025-11-25 23:50:53] ID="centos"
[2025-11-25 23:50:53] ID_LIKE="rhel fedora"
[2025-11-25 23:50:53] VERSION_ID="7"
[2025-11-25 23:50:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 23:50:53] ANSI_COLOR="0;31"
[2025-11-25 23:50:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 23:50:53] HOME_URL="https://www.centos.org/"
[2025-11-25 23:50:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 23:50:53] 
[2025-11-25 23:50:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 23:50:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 23:50:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 23:50:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 23:50:53] 
[2025-11-25 23:50:53] 2025-11-26 04:49:51,444 | INFO     | ***************************************
[2025-11-25 23:50:53] 2025-11-26 04:49:51,948 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 23:50:53] 2025-11-26 04:49:52,170 | INFO     | sufficient remaining disk space (78519468032 B)
[2025-11-25 23:50:53] 2025-11-26 04:49:52,170 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 23:50:53] 2025-11-26 04:49:52,170 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 23:50:53] 2025-11-26 04:49:52,170 | INFO     | update_server=False
[2025-11-25 23:50:53] 2025-11-26 04:49:52,171 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:50:53] 2025-11-26 04:49:52,171 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:50:53] 2025-11-26 04:49:52,186 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:50:53] 2025-11-26 04:49:52,186 | INFO     | aborting loop
[2025-11-25 23:50:53] 2025-11-26 04:49:52,189 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:50:53] 2025-11-26 04:49:52,197 | INFO     | all job control threads have been joined
[2025-11-25 23:50:53] 2025-11-26 04:49:52,619 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:50:53] 2025-11-26 04:49:52,907 | INFO     | all data control threads have been joined
[2025-11-25 23:50:53] 2025-11-26 04:49:53,189 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:50:53] 2025-11-26 04:49:53,195 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:50:53] 2025-11-26 04:49:53,204 | INFO     | [job] control thread has finished
[2025-11-25 23:50:53] 2025-11-26 04:49:53,210 | INFO     | all payload control threads have been joined
[2025-11-25 23:50:53] 2025-11-26 04:49:53,360 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:50:53] 2025-11-26 04:49:53,501 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:50:53] 2025-11-26 04:49:53,625 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:50:53] 2025-11-26 04:49:53,913 | INFO     | [data] control thread has finished
[2025-11-25 23:50:53] 2025-11-26 04:49:54,007 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:50:53] 2025-11-26 04:49:54,184 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:50:53] 2025-11-26 04:49:54,190 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:50:53] 2025-11-26 04:49:54,196 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:50:53] 2025-11-26 04:49:54,211 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:50:53] 2025-11-26 04:49:54,216 | INFO     | [payload] control thread has finished
[2025-11-25 23:50:53] 2025-11-26 04:49:54,388 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:50:53] 2025-11-26 04:49:54,528 | INFO     | [job] validate thread has finished
[2025-11-25 23:50:53] 2025-11-26 04:49:56,207 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:50:53] 2025-11-26 04:50:22,835 | INFO     | PID=2039880 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 23:50:53] 2025-11-26 04:50:22,836 | INFO     | .. there are 20 such processes running
[2025-11-25 23:50:53] 2025-11-26 04:50:22,836 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:50:53] 2025-11-26 04:50:22,836 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:50:53] 2025-11-26 04:50:22,836 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:50:53] 2025-11-26 04:50:42,558 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:50:53] 2025-11-26 04:50:44,175 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140162739492672)>', '<ExcThread(monitor, started 140161417471744)>']
[2025-11-25 23:50:53] 2025-11-26 04:50:45,005 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:50:53] 2025-11-26 04:50:45,005 | INFO     | [monitor] control thread has ended
[2025-11-25 23:50:53] 2025-11-26 04:50:49,204 | INFO     | all workflow threads have been joined
[2025-11-25 23:50:53] 2025-11-26 04:50:49,204 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:50:53] 2025-11-26 04:50:49,204 | INFO     | traces error code: 0
[2025-11-25 23:50:53] 2025-11-26 04:50:49,205 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:50:53] 2025-11-26 04:50:50,543 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:50:53] 2025-11-26 04:50:50,588 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:50:53] 2025-11-26 04:50:50,619 [wrapper] pilotpid: 2039880
[2025-11-25 23:50:53] 2025-11-26 04:50:50,659 [wrapper] Pilot exit status: 0
[2025-11-25 23:50:53] 2025-11-26 04:50:50,793 [wrapper] pandaids: 6895369006
[2025-11-25 23:50:53] 2025-11-26 04:50:51,761 [wrapper] cleanup supervisor_pilot 2922927 2039881
[2025-11-25 23:50:53] 2025-11-26 04:50:51,791 [wrapper] Test setup, not cleaning
[2025-11-25 23:50:53] 2025-11-26 04:50:51,828 [wrapper] apfmon messages muted
[2025-11-25 23:50:53] 2025-11-26 04:50:51,893 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:50:53] 2025-11-26 04:50:51,926 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:50:53]  *** Error codes and diagnostics ***
[2025-11-25 23:50:53]     "exeErrorCode": 0,
[2025-11-25 23:50:53]     "exeErrorDiag": "",
[2025-11-25 23:50:53]     "pilotErrorCode": 0,
[2025-11-25 23:50:53]     "pilotErrorDiag": "",
[2025-11-25 23:50:53]  *** Listing of results directory ***
[2025-11-25 23:50:53] total 1337672
[2025-11-25 23:50:53] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 14:32 pilot3.tar.gz
[2025-11-25 23:50:53] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 14:48 queuedata.json
[2025-11-25 23:50:53] -rwx------. 1 boincer umatlas     36292 Nov 23 14:49 runpilot2-wrapper.sh
[2025-11-25 23:50:53] -rw-r--r--. 1 boincer umatlas       100 Nov 24 16:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:50:53] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 16:48 run_atlas
[2025-11-25 23:50:53] -rw-r--r--. 1 boincer umatlas       105 Nov 24 16:48 job.xml
[2025-11-25 23:50:53] -rw-r--r--. 2 boincer umatlas 409522111 Nov 24 16:48 EVNT.47483658._000877.pool.root.1
[2025-11-25 23:50:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 16:48 start_atlas.sh
[2025-11-25 23:50:53] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 16:48 shared
[2025-11-25 23:50:53] -rw-r--r--. 2 boincer umatlas    590107 Nov 24 16:48 input.tar.gz
[2025-11-25 23:50:53] -rw-r--r--. 1 boincer umatlas         0 Nov 24 16:48 boinc_lockfile
[2025-11-25 23:50:53] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 16:49 pandaJob.out
[2025-11-25 23:50:53] -rw-------. 1 boincer umatlas        57 Nov 24 16:49 setup.sh.local
[2025-11-25 23:50:53] -rw-------. 1 boincer umatlas    991801 Nov 24 16:49 agis_schedconf.cvmfs.json
[2025-11-25 23:50:53] drwx------. 5 boincer umatlas      4096 Nov 24 16:49 pilot3
[2025-11-25 23:50:53] -rw-r--r--. 1 boincer umatlas       533 Nov 25 23:13 boinc_task_state.xml
[2025-11-25 23:50:53] -rw-r--r--. 1 boincer umatlas      6903 Nov 25 23:45 init_data.xml
[2025-11-25 23:50:53] -rw-------. 1 boincer umatlas 922254128 Nov 25 23:46 HITS.47556137._008633.pool.root.1
[2025-11-25 23:50:53] -rw-------. 1 boincer umatlas      1061 Nov 25 23:48 memory_monitor_summary.json
[2025-11-25 23:50:53] -rw-------. 1 boincer umatlas   1516240 Nov 25 23:48 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:50:53] -rw-------. 1 boincer umatlas   2846372 Nov 25 23:48 log.47556137._008633.job.log.tgz.1
[2025-11-25 23:50:53] -rw-------. 1 boincer umatlas        95 Nov 25 23:49 pilot_heartbeat.json
[2025-11-25 23:50:53] -rw-------. 1 boincer umatlas      8602 Nov 25 23:49 heartbeat.json
[2025-11-25 23:50:53] -rw-------. 1 boincer umatlas      4824 Nov 25 23:50 pilotlog.txt
[2025-11-25 23:50:53] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 23:50 boinc_mmap_file
[2025-11-25 23:50:53] -rw-r--r--. 1 boincer umatlas        29 Nov 25 23:50 wrapper_checkpoint.txt
[2025-11-25 23:50:53] -rw-------. 1 boincer umatlas  14195290 Nov 25 23:50 log.47556137._008633.job.log.1
[2025-11-25 23:50:53] -rw-------. 1 boincer umatlas       353 Nov 25 23:50 output.list
[2025-11-25 23:50:53] -rw-r--r--. 1 boincer umatlas       620 Nov 25 23:50 runtime_log
[2025-11-25 23:50:53] -rw-------. 1 boincer umatlas  17059840 Nov 25 23:50 result.tar.gz
[2025-11-25 23:50:53] -rw-------. 1 boincer umatlas       666 Nov 25 23:50 zWjMDmqGVh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAALKDmnRCqbm.diag
[2025-11-25 23:50:53] -rw-r--r--. 1 boincer umatlas      9344 Nov 25 23:50 runtime_log.err
[2025-11-25 23:50:53] -rw-r--r--. 1 boincer umatlas     21378 Nov 25 23:50 stderr.txt
[2025-11-25 23:50:53] HITS file was successfully produced:
[2025-11-25 23:50:53] -rw-------. 1 boincer umatlas 922254128 Nov 25 23:46 shared/HITS.pool.root.1
[2025-11-25 23:50:53]  *** Contents of shared directory: ***
[2025-11-25 23:50:53] total 1317828
[2025-11-25 23:50:53] -rw-r--r--. 2 boincer umatlas 409522111 Nov 24 16:48 ATLAS.root_0
[2025-11-25 23:50:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 16:48 start_atlas.sh
[2025-11-25 23:50:53] -rw-r--r--. 2 boincer umatlas    590107 Nov 24 16:48 input.tar.gz
[2025-11-25 23:50:53] -rw-------. 1 boincer umatlas 922254128 Nov 25 23:46 HITS.pool.root.1
[2025-11-25 23:50:53] -rw-------. 1 boincer umatlas  17059840 Nov 25 23:50 result.tar.gz
23:50:54 (2036190): run_atlas exited; CPU time 203118.426507
23:50:54 (2036190): called boinc_finish(0)

</stderr_txt>
]]>

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