Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:13:31 (3764442): wrapper (7.7.26015): starting
00:13:31 (3764442): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:13:31] Arguments: --nthreads 8
[2025-11-25 00:13:31] Threads: 8
[2025-11-25 00:13:31] Checking for CVMFS
[2025-11-25 00:13:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:13:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:13:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:13:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:13:36] 2.13.2.0 6468 31890 444264 153271 1 106 30600601 40960001 23139 16776704 0 110620819 99.613 110271659 38152 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:13:36] CVMFS is ok
[2025-11-25 00:13:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:13:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:13:36] Further information can be found at the LHC@home message board.
[2025-11-25 00:13:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:13:36] Checking for apptainer binary...
[2025-11-25 00:13:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:13:36] Running /usr/bin/apptainer --version
[2025-11-25 00:13:36] apptainer version 1.4.4-1.el9
[2025-11-25 00:13:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:13:37] c-206-41.aglt2.org
[2025-11-25 00:13:37] apptainer works
[2025-11-25 00:13:37] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:13:37] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:13:37] Starting ATLAS job with PandaID=6895369002
[2025-11-25 00:13:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:10 (3764442): BOINC client no longer exists - exiting
00:20:10 (3764442): timer handler: client dead, exiting
00:31:09 (3811363): wrapper (7.7.26015): starting
00:31:09 (3811363): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:31:09] Arguments: --nthreads 8
[2025-11-25 00:31:09] Threads: 8
[2025-11-25 00:31:09] This job has been restarted, cleaning up previous attempt
[2025-11-25 00:31:09] Checking for CVMFS
[2025-11-25 00:31:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:31:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:31:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:31:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:31:11] 2.13.2.0 6468 31908 446864 153272 3 273 30701567 40960001 16761 16776704 0 110730557 99.613 110301937 38154 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:31:11] CVMFS is ok
[2025-11-25 00:31:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:31:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:31:11] Further information can be found at the LHC@home message board.
[2025-11-25 00:31:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:31:11] Checking for apptainer binary...
[2025-11-25 00:31:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:31:11] Running /usr/bin/apptainer --version
[2025-11-25 00:31:11] apptainer version 1.4.4-1.el9
[2025-11-25 00:31:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:31:11] c-206-41.aglt2.org
[2025-11-25 00:31:11] apptainer works
[2025-11-25 00:31:12] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:31:12] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:31:12] Starting ATLAS job with PandaID=6895369002
[2025-11-25 00:31:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:04:23]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:04:23] 2025-11-26 21:34:54,347 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6895369002/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:04:23] 2025-11-26 21:34:54,358 | INFO     | extracted standard info from prmon json
[2025-11-27 00:04:23] 2025-11-26 21:34:54,358 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:04:23] 2025-11-26 21:34:54,358 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:04:23] 2025-11-26 21:34:54,582 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:04:23] 2025-11-26 21:34:54,595 | INFO     | sum of square deviations: 4085678113773.6553
[2025-11-27 00:04:23] 2025-11-26 21:34:54,756 | INFO     | monitor loop #9312: job 0:6895369002 is in state 'finished'
[2025-11-27 00:04:23] 2025-11-26 21:34:54,756 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:04:23] 2025-11-26 21:34:55,030 | INFO     | sum of deviations: 13344681333454.92
[2025-11-27 00:04:23] 2025-11-26 21:34:55,031 | INFO     | mean x: 1764120830.5453005
[2025-11-27 00:04:23] 2025-11-26 21:34:55,031 | INFO     | mean y: 2961639.7950889077
[2025-11-27 00:04:23] 2025-11-26 21:34:55,031 | INFO     | intersect: -5759026862.914711
[2025-11-27 00:04:23] 2025-11-26 21:34:55,033 | INFO     | chi2: 6.8910122716448114
[2025-11-27 00:04:23] 2025-11-26 21:34:55,035 | INFO     | sum of square deviations: 4059788554677.448
[2025-11-27 00:04:23] 2025-11-26 21:34:55,135 | INFO     | sum of deviations: 14106582446152.162
[2025-11-27 00:04:23] 2025-11-26 21:34:55,135 | INFO     | mean x: 1764120678.060246
[2025-11-27 00:04:23] 2025-11-26 21:34:55,135 | INFO     | mean y: 2966126.132795927
[2025-11-27 00:04:23] 2025-11-26 21:34:55,135 | INFO     | intersect: -6126839270.098214
[2025-11-27 00:04:23] 2025-11-26 21:34:55,137 | INFO     | chi2: 4.031478782995955
[2025-11-27 00:04:23] 2025-11-26 21:34:55,137 | INFO     | current chi2=4.031478782995955 (change=41.49656648291407 %)
[2025-11-27 00:04:23] 2025-11-26 21:34:55,139 | INFO     | sum of square deviations: 4034008338258.9775
[2025-11-27 00:04:23] 2025-11-26 21:34:55,243 | INFO     | sum of deviations: 14189219905901.406
[2025-11-27 00:04:23] 2025-11-26 21:34:55,243 | INFO     | mean x: 1764120525.5744047
[2025-11-27 00:04:23] 2025-11-26 21:34:55,243 | INFO     | mean y: 2966614.0034013605
[2025-11-27 00:04:23] 2025-11-26 21:34:55,243 | INFO     | intersect: -6202150475.242091
[2025-11-27 00:04:23] 2025-11-26 21:34:55,245 | INFO     | chi2: 3.842078158803255
[2025-11-27 00:04:23] 2025-11-26 21:34:55,245 | INFO     | current chi2=3.842078158803255 (change=4.698043432389068 %)
[2025-11-27 00:04:23] 2025-11-26 21:34:55,245 | INFO     | right removable region: 2351
[2025-11-27 00:04:23] 2025-11-26 21:34:55,247 | INFO     | sum of square deviations: 4059778403667.4463
[2025-11-27 00:04:23] 2025-11-26 21:34:55,349 | INFO     | sum of deviations: 12514152553018.826
[2025-11-27 00:04:23] 2025-11-26 21:34:55,350 | INFO     | mean x: 1764120983.060246
[2025-11-27 00:04:23] 2025-11-26 21:34:55,350 | INFO     | mean y: 2966529.5082732285
[2025-11-27 00:04:23] 2025-11-26 21:34:55,350 | INFO     | intersect: -5434886700.129685
[2025-11-27 00:04:23] 2025-11-26 21:34:55,351 | INFO     | chi2: 3.8888326634656623
[2025-11-27 00:04:23] 2025-11-26 21:34:55,352 | INFO     | current chi2=3.8888326634656623 (change=43.566597908010415 %)
[2025-11-27 00:04:23] 2025-11-26 21:34:55,354 | INFO     | sum of square deviations: 4033989616518.003
[2025-11-27 00:04:23] 2025-11-26 21:34:55,453 | INFO     | sum of deviations: 12207238617757.863
[2025-11-27 00:04:23] 2025-11-26 21:34:55,453 | INFO     | mean x: 1764121135.5714285
[2025-11-27 00:04:23] 2025-11-26 21:34:55,453 | INFO     | mean y: 2968343.857993197
[2025-11-27 00:04:23] 2025-11-26 21:34:55,453 | INFO     | intersect: -5335431032.375079
[2025-11-27 00:04:23] 2025-11-26 21:34:55,455 | INFO     | chi2: 3.5433004713924667
[2025-11-27 00:04:23] 2025-11-26 21:34:55,456 | INFO     | current chi2=3.5433004713924667 (change=8.885241972979703 %)
[2025-11-27 00:04:23] 2025-11-26 21:34:55,456 | INFO     | left removable region: 20
[2025-11-27 00:04:23] 2025-11-26 21:34:55,458 | INFO     | sum of square deviations: 3926890233413.317
[2025-11-27 00:04:23] 2025-11-26 21:34:55,560 | INFO     | sum of deviations: 12646677444351.754
[2025-11-27 00:04:23] 2025-11-26 21:34:55,560 | INFO     | mean x: 1764121105.1184042
[2025-11-27 00:04:23] 2025-11-26 21:34:55,560 | INFO     | mean y: 2975649.8704418703
[2025-11-27 00:04:23] 2025-11-26 21:34:55,560 | INFO     | intersect: -5678433623.903265
[2025-11-27 00:04:23] 2025-11-26 21:34:55,562 | INFO     | chi2: 0.345403788709044
[2025-11-27 00:04:23] 2025-11-26 21:34:55,562 | INFO     | current memory leak: 3.22 B/s (using 2331 data points, chi2=0.35)
[2025-11-27 00:04:23] 2025-11-26 21:34:55,564 | INFO     | could have reported an average CPU frequency of 3212 MHz (82 samples)
[2025-11-27 00:04:23] 2025-11-26 21:34:55,564 | INFO     | ..............................
[2025-11-27 00:04:23] 2025-11-26 21:34:55,564 | INFO     | . Timing measurements:
[2025-11-27 00:04:23] 2025-11-26 21:34:55,564 | INFO     | . get job = 0 s
[2025-11-27 00:04:23] 2025-11-26 21:34:55,564 | INFO     | . initial setup = 2 s
[2025-11-27 00:04:23] 2025-11-26 21:34:55,564 | INFO     | . payload setup = 29 s
[2025-11-27 00:04:23] 2025-11-26 21:34:55,564 | INFO     | . stage-in = 0 s
[2025-11-27 00:04:23] 2025-11-26 21:34:55,564 | INFO     | . payload execution = 144066 s
[2025-11-27 00:04:23] 2025-11-26 21:34:55,565 | INFO     | . stage-out = 5 s
[2025-11-27 00:04:23] 2025-11-26 21:34:55,565 | INFO     | . log creation = 2 s
[2025-11-27 00:04:23] 2025-11-26 21:34:55,565 | INFO     | ..............................
[2025-11-27 00:04:23] 2025-11-26 21:34:55,642 | INFO     | 
[2025-11-27 00:04:23] 2025-11-26 21:34:55,643 | INFO     | job summary report
[2025-11-27 00:04:23] 2025-11-26 21:34:55,643 | INFO     | --------------------------------------------------
[2025-11-27 00:04:23] 2025-11-26 21:34:55,643 | INFO     | PanDA job id: 6895369002
[2025-11-27 00:04:23] 2025-11-26 21:34:55,643 | INFO     | task id: 47556137
[2025-11-27 00:04:23] 2025-11-26 21:34:55,643 | INFO     | errors: (none)
[2025-11-27 00:04:23] 2025-11-26 21:34:55,643 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:04:23] 2025-11-26 21:34:55,643 | INFO     | pilot state: finished 
[2025-11-27 00:04:23] 2025-11-26 21:34:55,643 | INFO     | transexitcode: 0
[2025-11-27 00:04:23] 2025-11-26 21:34:55,643 | INFO     | exeerrorcode: 0
[2025-11-27 00:04:23] 2025-11-26 21:34:55,643 | INFO     | exeerrordiag: 
[2025-11-27 00:04:23] 2025-11-26 21:34:55,643 | INFO     | exitcode: 0
[2025-11-27 00:04:23] 2025-11-26 21:34:55,643 | INFO     | exitmsg: OK
[2025-11-27 00:04:23] 2025-11-26 21:34:55,643 | INFO     | cpuconsumptiontime: 206951 s
[2025-11-27 00:04:23] 2025-11-26 21:34:55,643 | INFO     | nevents: 1000
[2025-11-27 00:04:23] 2025-11-26 21:34:55,643 | INFO     | neventsw: 0
[2025-11-27 00:04:23] 2025-11-26 21:34:55,643 | INFO     | pid: 3911618
[2025-11-27 00:04:23] 2025-11-26 21:34:55,644 | INFO     | pgrp: 3911618
[2025-11-27 00:04:23] 2025-11-26 21:34:55,644 | INFO     | corecount: 8
[2025-11-27 00:04:23] 2025-11-26 21:34:55,644 | INFO     | event service: False
[2025-11-27 00:04:23] 2025-11-26 21:34:55,644 | INFO     | sizes: {0: 2284088, 1: 2284287, 12: 2284287, 23: 2284577, 34: 2284605, 144100: 2378496, 144106: 2387495, 144110: 2387551, 144132: 2387797}
[2025-11-27 00:04:23] 2025-11-26 21:34:55,644 | INFO     | --------------------------------------------------
[2025-11-27 00:04:23] 2025-11-26 21:34:55,644 | INFO     | 
[2025-11-27 00:04:23] 2025-11-26 21:34:55,644 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 00:04:23] 2025-11-26 21:34:55,871 | INFO     | time since job start (144186s) is within the limit (172800.0s)
[2025-11-27 00:04:23] 2025-11-26 21:34:55,881 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:04:23] 2025-11-26 21:34:55,882 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:04:23] 2025-11-26 21:34:55,882 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:04:23] 2025-11-26 21:34:55,882 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:04:23] 2025-11-26 21:34:55,882 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:04:23] 2025-11-26 21:34:55,882 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:04:23] 2025-11-26 21:34:55,882 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:04:23] 2025-11-26 21:34:55,882 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:04:23] 2025-11-26 21:34:55,882 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:04:23] 2025-11-26 21:34:55,882 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:04:23] 2025-11-26 21:34:55,882 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:04:23] 2025-11-26 21:34:55,882 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:04:23] 2025-11-26 21:34:55,882 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:04:23] 2025-11-26 21:34:55,882 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:04:23] 2025-11-26 21:34:55,883 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:04:23] 2025-11-26 21:34:55,883 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:04:23] 2025-11-26 21:34:55,883 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:04:23] 2025-11-26 21:34:55,883 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:04:23] 2025-11-26 21:34:55,883 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:04:23] 2025-11-26 21:34:55,883 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:04:23] 2025-11-26 21:34:55,883 | INFO     | job 6895369002 has completed (purged errors)
[2025-11-27 00:04:23] 2025-11-26 21:34:55,883 | INFO     | overall cleanup function is called
[2025-11-27 00:04:23] 2025-11-26 21:34:56,994 | INFO     | --- collectZombieJob: --- 10, [3911618]
[2025-11-27 00:04:23] 2025-11-26 21:34:56,994 | INFO     | zombie collector waiting for pid 3911618
[2025-11-27 00:04:23] 2025-11-26 21:34:56,995 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:04:23] 2025-11-26 21:34:56,995 | INFO     | collected zombie processes
[2025-11-27 00:04:23] 2025-11-26 21:34:56,995 | INFO     | will attempt to kill all subprocesses of pid=3911618
[2025-11-27 00:04:23] 2025-11-26 21:34:57,433 | INFO     | process IDs to be killed: [3911618] (in reverse order)
[2025-11-27 00:04:23] 2025-11-26 21:34:57,664 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:04:23] 2025-11-26 21:34:57,664 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:04:23] 2025-11-26 21:34:57,678 | INFO     | did not find any defunct processes belonging to 3911618
[2025-11-27 00:04:23] 2025-11-26 21:34:57,691 | INFO     | did not find any defunct processes belonging to 3911618
[2025-11-27 00:04:23] 2025-11-26 21:34:57,692 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:04:23] 2025-11-26 21:34:57,692 | INFO     | ready for new job
[2025-11-27 00:04:23] 2025-11-26 21:34:57,693 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:04:23] 2025-11-26 21:34:57,702 | INFO     | ***************************************
[2025-11-27 00:04:23] 2025-11-26 21:34:57,702 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:04:23] 2025-11-26 21:34:57,702 | INFO     | ***************************************
[2025-11-27 00:04:23] 2025-11-26 21:34:57,702 | INFO     | 
[2025-11-27 00:04:23] 2025-11-26 21:34:57,706 | INFO     | architecture information:
[2025-11-27 00:04:23] 2025-11-26 21:34:57,707 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:04:23] 2025-11-26 21:34:57,834 | INFO     | cat /etc/os-release:
[2025-11-27 00:04:23] NAME="CentOS Linux"
[2025-11-27 00:04:23] VERSION="7 (Core)"
[2025-11-27 00:04:23] ID="centos"
[2025-11-27 00:04:23] ID_LIKE="rhel fedora"
[2025-11-27 00:04:23] VERSION_ID="7"
[2025-11-27 00:04:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:04:23] ANSI_COLOR="0;31"
[2025-11-27 00:04:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:04:23] HOME_URL="https://www.centos.org/"
[2025-11-27 00:04:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:04:23] 
[2025-11-27 00:04:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:04:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:04:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:04:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:04:23] 
[2025-11-27 00:04:23] 2025-11-26 21:34:57,834 | INFO     | ***************************************
[2025-11-27 00:04:23] 2025-11-26 21:34:58,337 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 00:04:23] 2025-11-26 21:34:58,428 | INFO     | sufficient remaining disk space (77662781440 B)
[2025-11-27 00:04:23] 2025-11-26 21:34:58,429 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:04:23] 2025-11-26 21:34:58,429 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:04:23] 2025-11-26 21:34:58,429 | INFO     | update_server=False
[2025-11-27 00:04:23] 2025-11-26 21:34:58,429 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:04:23] 2025-11-26 21:34:58,429 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:04:23] 2025-11-26 21:34:58,429 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:04:23] 2025-11-26 21:34:58,430 | INFO     | aborting loop
[2025-11-27 00:04:23] 2025-11-26 21:34:58,661 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:04:23] 2025-11-26 21:34:58,777 | INFO     | all data control threads have been joined
[2025-11-27 00:04:23] 2025-11-26 21:34:58,929 | INFO     | all job control threads have been joined
[2025-11-27 00:04:23] 2025-11-26 21:34:59,202 | INFO     | all payload control threads have been joined
[2025-11-27 00:04:23] 2025-11-26 21:34:59,437 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:04:23] 2025-11-26 21:34:59,438 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:04:23] 2025-11-26 21:34:59,536 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:04:23] 2025-11-26 21:34:59,565 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:04:23] 2025-11-26 21:34:59,783 | INFO     | [data] control thread has finished
[2025-11-27 00:04:23] 2025-11-26 21:34:59,953 | INFO     | [job] control thread has finished
[2025-11-27 00:04:23] 2025-11-26 21:35:00,018 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:04:23] 2025-11-26 21:35:00,038 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:04:23] 2025-11-26 21:35:00,137 | INFO     | [job] validate thread has finished
[2025-11-27 00:04:23] 2025-11-26 21:35:00,208 | INFO     | [payload] control thread has finished
[2025-11-27 00:04:23] 2025-11-26 21:35:00,400 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:04:23] 2025-11-26 21:35:00,430 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:04:23] 2025-11-26 21:35:00,659 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:04:23] 2025-11-26 21:35:00,668 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:04:23] 2025-11-26 21:35:00,950 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:04:23] 2025-11-26 21:35:01,357 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:04:23] 2025-11-26 21:35:01,665 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:04:23] 2025-11-26 21:35:02,439 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:04:23] 2025-11-26 21:35:03,530 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140602961209152)>', '<ExcThread(monitor, started 140602146526976)>']
[2025-11-27 00:04:23] 2025-11-26 21:35:08,556 | INFO     | all workflow threads have been joined
[2025-11-27 00:04:23] 2025-11-26 21:35:08,556 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:04:23] 2025-11-26 21:35:08,557 | INFO     | traces error code: 0
[2025-11-27 00:04:23] 2025-11-26 21:35:08,557 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:04:23] 2025-11-26 21:35:27,946 | INFO     | 144190s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 00:04:23] 2025-11-26 21:35:29,907 | INFO     | PID=3841609 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 00:04:23] 2025-11-26 21:35:29,907 | INFO     | .. there are 20 such processes running
[2025-11-27 00:04:23] 2025-11-26 21:35:29,908 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:04:23] 2025-11-26 21:35:29,908 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:04:23] 2025-11-26 21:35:29,908 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:04:23] 2025-11-26 21:35:29,908 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:04:23] 2025-11-26 21:35:29,908 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 00:04:23] 2025-11-26 21:35:29,909 | INFO     | [monitor] control thread has ended
[2025-11-27 00:04:23] 2025-11-26 21:35:30,131 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:04:23] 2025-11-26 21:35:30,168 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:04:23] 2025-11-26 21:35:30,207 [wrapper] pilotpid: 3841609
[2025-11-27 00:04:23] 2025-11-26 21:35:30,254 [wrapper] Pilot exit status: 0
[2025-11-27 00:04:23] 2025-11-26 21:35:30,352 [wrapper] pandaids: 6895369002 6895369002
[2025-11-27 00:04:23] 2025-11-26 21:35:30,715 [wrapper] cleanup supervisor_pilot 2243093 3841610
[2025-11-27 00:04:23] 2025-11-26 21:35:30,749 [wrapper] Test setup, not cleaning
[2025-11-27 00:04:23] 2025-11-26 21:35:30,753 [wrapper] apfmon messages muted
[2025-11-27 00:04:23] 2025-11-26 21:35:30,760 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:04:23] 2025-11-26 21:35:30,768 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:04:23]  *** Error codes and diagnostics ***
[2025-11-27 00:04:23]     "exeErrorCode": 0,
[2025-11-27 00:04:23]     "exeErrorDiag": "",
[2025-11-27 00:04:23]     "pilotErrorCode": 0,
[2025-11-27 00:04:23]     "pilotErrorDiag": "",
[2025-11-27 00:04:23]  *** Listing of results directory ***
[2025-11-27 00:04:23] total 1757108
[2025-11-27 00:04:23] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 00:04:23] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 14:32 pilot3.tar.gz
[2025-11-27 00:04:23] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 14:48 queuedata.json
[2025-11-27 00:04:23] -rwx------. 1 boincer umatlas     36292 Nov 23 14:49 runpilot2-wrapper.sh
[2025-11-27 00:04:23] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:04:23] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:13 run_atlas
[2025-11-27 00:04:23] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:13 job.xml
[2025-11-27 00:04:23] -rw-r--r--. 3 boincer umatlas 412453032 Nov 25 00:13 EVNT.47483658._000876.pool.root.1
[2025-11-27 00:04:23] -rw-r--r--. 3 boincer umatlas 412453032 Nov 25 00:13 ATLAS.root_0
[2025-11-27 00:04:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:13 start_atlas.sh
[2025-11-27 00:04:23] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:13 shared
[2025-11-27 00:04:23] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 00:13 input.tar.gz
[2025-11-27 00:04:23] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:13 boinc_lockfile
[2025-11-27 00:04:23] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:31 pandaJob.out
[2025-11-27 00:04:23] -rw-------. 1 boincer umatlas        57 Nov 25 00:31 setup.sh.local
[2025-11-27 00:04:23] -rw-------. 1 boincer umatlas    991801 Nov 25 00:31 agis_schedconf.cvmfs.json
[2025-11-27 00:04:23] -rw-r--r--. 1 boincer umatlas       530 Nov 26 16:25 boinc_task_state.xml
[2025-11-27 00:04:23] -rw-------. 1 boincer umatlas 926029426 Nov 26 16:33 HITS.47556137._008629.pool.root.1
[2025-11-27 00:04:23] -rw-------. 1 boincer umatlas      1063 Nov 26 16:34 memory_monitor_summary.json
[2025-11-27 00:04:23] -rw-------. 1 boincer umatlas   1516240 Nov 26 16:34 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:04:23] -rw-------. 1 boincer umatlas   3194272 Nov 26 16:34 log.47556137._008629.job.log.tgz.1
[2025-11-27 00:04:23] -rw-------. 1 boincer umatlas      8601 Nov 26 16:34 heartbeat.json
[2025-11-27 00:04:23] -rw-------. 1 boincer umatlas        96 Nov 26 16:35 pilot_heartbeat.json
[2025-11-27 00:04:23] -rw-------. 1 boincer umatlas      1010 Nov 26 16:35 pilotlog.txt
[2025-11-27 00:04:23] -rw-------. 1 boincer umatlas  19013136 Nov 26 16:35 log.47556137._008629.job.log.1
[2025-11-27 00:04:23] -rw-------. 1 boincer umatlas       353 Nov 26 16:35 output.list
[2025-11-27 00:04:23] -rw-r--r--. 1 boincer umatlas       620 Nov 26 16:35 runtime_log
[2025-11-27 00:04:23] -rw-------. 1 boincer umatlas  22231040 Nov 26 16:35 result.tar.gz
[2025-11-27 00:04:23] -rw-------. 1 boincer umatlas       794 Nov 26 16:35 y5ULDmTGVh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm89KKDmqfpRBo.diag
[2025-11-27 00:04:23] -rw-r--r--. 1 boincer umatlas      9429 Nov 26 16:35 runtime_log.err
[2025-11-27 00:04:23] -rw-r--r--. 1 boincer umatlas      6903 Nov 27 00:04 init_data.xml
[2025-11-27 00:04:23] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 00:04 boinc_mmap_file
[2025-11-27 00:04:23] -rw-r--r--. 1 boincer umatlas        27 Nov 27 00:04 wrapper_checkpoint.txt
[2025-11-27 00:04:23] -rw-r--r--. 1 boincer umatlas     23644 Nov 27 00:04 stderr.txt
[2025-11-27 00:04:23] HITS file was successfully produced:
[2025-11-27 00:04:23] -rw-------. 1 boincer umatlas 926029426 Nov 26 16:33 shared/HITS.pool.root.1
[2025-11-27 00:04:23]  *** Contents of shared directory: ***
[2025-11-27 00:04:23] total 1329432
[2025-11-27 00:04:23] -rw-r--r--. 3 boincer umatlas 412453032 Nov 25 00:13 ATLAS.root_0
[2025-11-27 00:04:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:13 start_atlas.sh
[2025-11-27 00:04:23] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 00:13 input.tar.gz
[2025-11-27 00:04:23] -rw-------. 1 boincer umatlas 926029426 Nov 26 16:33 HITS.pool.root.1
[2025-11-27 00:04:23] -rw-------. 1 boincer umatlas  22231040 Nov 26 16:35 result.tar.gz
00:04:25 (3811363): run_atlas exited; CPU time 207301.366336
00:04:25 (3811363): called boinc_finish(0)

</stderr_txt>
]]>

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