Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:21:46 (2082339): wrapper (7.7.26015): starting
07:21:46 (2082339): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 07:21:46] Arguments: --nthreads 9
[2025-11-24 07:21:46] Threads: 9
[2025-11-24 07:21:46] Checking for CVMFS
[2025-11-24 07:21:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 07:21:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 07:21:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 07:21:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 07:21:47] 2.13.3.0 4306 24086 308104 153246 1 91 29528064 32935936 30176 16776704 0 138561017 99.788 75437207 31798 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 07:21:47] CVMFS is ok
[2025-11-24 07:21:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 07:21:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 07:21:47] Further information can be found at the LHC@home message board.
[2025-11-24 07:21:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 07:21:47] Checking for apptainer binary...
[2025-11-24 07:21:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 07:21:47] Running /usr/bin/apptainer --version
[2025-11-24 07:21:47] apptainer version 1.4.4-1.el9
[2025-11-24 07:21:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 07:21:47] c-6-4.aglt2.org
[2025-11-24 07:21:47] apptainer works
[2025-11-24 07:21:47] Set ATHENA_PROC_NUMBER=9
[2025-11-24 07:21:47] Set ATHENA_CORE_NUMBER=9
[2025-11-24 07:21:47] Starting ATLAS job with PandaID=6895368982
[2025-11-24 07:21:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 20:07:46]  *** The last 200 lines of the pilot log: ***
[2025-11-24 20:07:46] 2025-11-25 01:07:10,776 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 20:07:46] 2025-11-25 01:07:12,084 | INFO     | time since job start (45906s) is within the limit (172800.0s)
[2025-11-24 20:07:46] 2025-11-25 01:07:12,275 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 20:07:46] 2025-11-25 01:07:12,288 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.807024999999
[2025-11-24 20:07:46] 2025-11-25 01:07:12,307 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895368982/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 20:07:46] 2025-11-25 01:07:12,308 | INFO     | extracted standard info from prmon json
[2025-11-24 20:07:46] 2025-11-25 01:07:12,309 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 20:07:46] 2025-11-25 01:07:12,309 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 20:07:46] 2025-11-25 01:07:12,328 | INFO     | fitting pss+swap vs Time
[2025-11-24 20:07:46] 2025-11-25 01:07:12,330 | INFO     | sum of square deviations: 131868022243.48392
[2025-11-24 20:07:46] 2025-11-25 01:07:12,377 | INFO     | sum of deviations: 1067882717442.4185
[2025-11-24 20:07:46] 2025-11-25 01:07:12,377 | INFO     | mean x: 1764009872.593085
[2025-11-24 20:07:46] 2025-11-25 01:07:12,377 | INFO     | mean y: 3090257.272606383
[2025-11-24 20:07:46] 2025-11-25 01:07:12,377 | INFO     | intersect: -14282068678.847261
[2025-11-24 20:07:46] 2025-11-25 01:07:12,379 | INFO     | chi2: 5.860733642284121
[2025-11-24 20:07:46] 2025-11-25 01:07:12,380 | INFO     | sum of square deviations: 129255423957.46994
[2025-11-24 20:07:46] 2025-11-25 01:07:12,396 | INFO     | sum of deviations: 1348689079772.5422
[2025-11-24 20:07:46] 2025-11-25 01:07:12,396 | INFO     | mean x: 1764009720.1004016
[2025-11-24 20:07:46] 2025-11-25 01:07:12,396 | INFO     | mean y: 3106643.5261044176
[2025-11-24 20:07:46] 2025-11-25 01:07:12,396 | INFO     | intersect: -18403089191.589077
[2025-11-24 20:07:46] 2025-11-25 01:07:12,397 | INFO     | chi2: 2.5405469149143274
[2025-11-24 20:07:46] 2025-11-25 01:07:12,398 | INFO     | current chi2=2.5405469149143274 (change=56.65138411026316 %)
[2025-11-24 20:07:46] 2025-11-25 01:07:12,400 | INFO     | sum of square deviations: 126677388731.71553
[2025-11-24 20:07:46] 2025-11-25 01:07:12,417 | INFO     | sum of deviations: 1386571357005.6987
[2025-11-24 20:07:46] 2025-11-25 01:07:12,418 | INFO     | mean x: 1764009567.6024258
[2025-11-24 20:07:46] 2025-11-25 01:07:12,418 | INFO     | mean y: 3108873.9447439355
[2025-11-24 20:07:46] 2025-11-25 01:07:12,418 | INFO     | intersect: -19305192034.44901
[2025-11-24 20:07:46] 2025-11-25 01:07:12,419 | INFO     | chi2: 2.3033194112666173
[2025-11-24 20:07:46] 2025-11-25 01:07:12,419 | INFO     | current chi2=2.3033194112666173 (change=9.337654906314134 %)
[2025-11-24 20:07:46] 2025-11-25 01:07:12,419 | INFO     | right removable region: 741
[2025-11-24 20:07:46] 2025-11-25 01:07:12,420 | INFO     | sum of square deviations: 129254922537.46986
[2025-11-24 20:07:46] 2025-11-25 01:07:12,435 | INFO     | sum of deviations: 847067595989.0687
[2025-11-24 20:07:46] 2025-11-25 01:07:12,436 | INFO     | mean x: 1764010025.1004016
[2025-11-24 20:07:46] 2025-11-25 01:07:12,436 | INFO     | mean y: 3103125.1057563587
[2025-11-24 20:07:46] 2025-11-25 01:07:12,436 | INFO     | intersect: -11557274630.172758
[2025-11-24 20:07:46] 2025-11-25 01:07:12,437 | INFO     | chi2: 3.6971408724065244
[2025-11-24 20:07:46] 2025-11-25 01:07:12,437 | INFO     | current chi2=3.6971408724065244 (change=36.916756534841824 %)
[2025-11-24 20:07:46] 2025-11-25 01:07:12,438 | INFO     | sum of square deviations: 126676795629.9191
[2025-11-24 20:07:46] 2025-11-25 01:07:12,453 | INFO     | sum of deviations: 794990587932.2428
[2025-11-24 20:07:46] 2025-11-25 01:07:12,453 | INFO     | mean x: 1764010177.6010783
[2025-11-24 20:07:46] 2025-11-25 01:07:12,453 | INFO     | mean y: 3106204.1967654987
[2025-11-24 20:07:46] 2025-11-25 01:07:12,453 | INFO     | intersect: -11067362394.539425
[2025-11-24 20:07:46] 2025-11-25 01:07:12,454 | INFO     | chi2: 3.6495305758606995
[2025-11-24 20:07:46] 2025-11-25 01:07:12,455 | INFO     | current chi2=3.6495305758606995 (change=1.287759871449926 %)
[2025-11-24 20:07:46] 2025-11-25 01:07:12,455 | INFO     | left removable region: 20
[2025-11-24 20:07:46] 2025-11-25 01:07:12,456 | INFO     | sum of square deviations: 116223108223.4452
[2025-11-24 20:07:46] 2025-11-25 01:07:12,472 | INFO     | sum of deviations: 1058441286700.1503
[2025-11-24 20:07:46] 2025-11-25 01:07:12,472 | INFO     | mean x: 1764010147.1151178
[2025-11-24 20:07:46] 2025-11-25 01:07:12,472 | INFO     | mean y: 3128699.1789181693
[2025-11-24 20:07:46] 2025-11-25 01:07:12,472 | INFO     | intersect: -16061672857.109213
[2025-11-24 20:07:46] 2025-11-25 01:07:12,473 | INFO     | chi2: 0.05362072291280243
[2025-11-24 20:07:46] 2025-11-25 01:07:12,474 | INFO     | current memory leak: 9.11 B/s (using 721 data points, chi2=0.05)
[2025-11-24 20:07:46] 2025-11-25 01:07:12,475 | INFO     | could have reported an average CPU frequency of 2599 MHz (29 samples)
[2025-11-24 20:07:46] 2025-11-25 01:07:12,475 | INFO     | ..............................
[2025-11-24 20:07:46] 2025-11-25 01:07:12,475 | INFO     | . Timing measurements:
[2025-11-24 20:07:46] 2025-11-25 01:07:12,475 | INFO     | . get job = 0 s
[2025-11-24 20:07:46] 2025-11-25 01:07:12,475 | INFO     | . initial setup = 3 s
[2025-11-24 20:07:46] 2025-11-25 01:07:12,476 | INFO     | . payload setup = 12 s
[2025-11-24 20:07:46] 2025-11-25 01:07:12,476 | INFO     | . stage-in = 0 s
[2025-11-24 20:07:46] 2025-11-25 01:07:12,476 | INFO     | . payload execution = 45852 s
[2025-11-24 20:07:46] 2025-11-25 01:07:12,476 | INFO     | . stage-out = 4 s
[2025-11-24 20:07:46] 2025-11-25 01:07:12,476 | INFO     | . log creation = 0 s
[2025-11-24 20:07:46] 2025-11-25 01:07:12,476 | INFO     | ..............................
[2025-11-24 20:07:46] 2025-11-25 01:07:12,591 | INFO     | 
[2025-11-24 20:07:46] 2025-11-25 01:07:12,591 | INFO     | job summary report
[2025-11-24 20:07:46] 2025-11-25 01:07:12,591 | INFO     | --------------------------------------------------
[2025-11-24 20:07:46] 2025-11-25 01:07:12,591 | INFO     | PanDA job id: 6895368982
[2025-11-24 20:07:46] 2025-11-25 01:07:12,591 | INFO     | task id: 47556137
[2025-11-24 20:07:46] 2025-11-25 01:07:12,591 | INFO     | errors: (none)
[2025-11-24 20:07:46] 2025-11-25 01:07:12,591 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 20:07:46] 2025-11-25 01:07:12,592 | INFO     | pilot state: finished 
[2025-11-24 20:07:46] 2025-11-25 01:07:12,592 | INFO     | transexitcode: 0
[2025-11-24 20:07:46] 2025-11-25 01:07:12,592 | INFO     | exeerrorcode: 0
[2025-11-24 20:07:46] 2025-11-25 01:07:12,592 | INFO     | exeerrordiag: 
[2025-11-24 20:07:46] 2025-11-25 01:07:12,592 | INFO     | exitcode: 0
[2025-11-24 20:07:46] 2025-11-25 01:07:12,592 | INFO     | exitmsg: OK
[2025-11-24 20:07:46] 2025-11-25 01:07:12,592 | INFO     | cpuconsumptiontime: 290988 s
[2025-11-24 20:07:46] 2025-11-25 01:07:12,592 | INFO     | nevents: 1000
[2025-11-24 20:07:46] 2025-11-25 01:07:12,592 | INFO     | neventsw: 0
[2025-11-24 20:07:46] 2025-11-25 01:07:12,592 | INFO     | pid: 2093706
[2025-11-24 20:07:46] 2025-11-25 01:07:12,593 | INFO     | pgrp: 2093706
[2025-11-24 20:07:46] 2025-11-25 01:07:12,593 | INFO     | corecount: 9
[2025-11-24 20:07:46] 2025-11-25 01:07:12,593 | INFO     | event service: False
[2025-11-24 20:07:46] 2025-11-25 01:07:12,593 | INFO     | sizes: {0: 2283482, 1: 2284167, 2: 2284366, 9: 2284628, 12: 2284656, 45868: 2332427, 45874: 2341421, 45877: 2341477, 45885: 2341723}
[2025-11-24 20:07:46] 2025-11-25 01:07:12,593 | INFO     | --------------------------------------------------
[2025-11-24 20:07:46] 2025-11-25 01:07:12,593 | INFO     | 
[2025-11-24 20:07:46] 2025-11-25 01:07:12,593 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 20:07:46] 2025-11-25 01:07:12,655 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 20:07:46] 2025-11-25 01:07:12,655 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 20:07:46] 2025-11-25 01:07:12,655 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 20:07:46] 2025-11-25 01:07:12,655 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 20:07:46] 2025-11-25 01:07:12,656 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 20:07:46] 2025-11-25 01:07:12,656 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 20:07:46] 2025-11-25 01:07:12,656 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 20:07:46] 2025-11-25 01:07:12,656 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 20:07:46] 2025-11-25 01:07:12,656 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 20:07:46] 2025-11-25 01:07:12,656 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 20:07:46] 2025-11-25 01:07:12,656 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 20:07:46] 2025-11-25 01:07:12,656 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 20:07:46] 2025-11-25 01:07:12,656 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 20:07:46] 2025-11-25 01:07:12,656 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 20:07:46] 2025-11-25 01:07:12,657 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 20:07:46] 2025-11-25 01:07:12,657 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 20:07:46] 2025-11-25 01:07:12,657 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 20:07:46] 2025-11-25 01:07:12,657 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 20:07:46] 2025-11-25 01:07:12,657 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 20:07:46] 2025-11-25 01:07:12,657 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 20:07:46] 2025-11-25 01:07:12,657 | INFO     | job 6895368982 has completed (purged errors)
[2025-11-24 20:07:46] 2025-11-25 01:07:12,657 | INFO     | overall cleanup function is called
[2025-11-24 20:07:46] 2025-11-25 01:07:13,677 | INFO     | --- collectZombieJob: --- 10, [2093706]
[2025-11-24 20:07:46] 2025-11-25 01:07:13,677 | INFO     | zombie collector waiting for pid 2093706
[2025-11-24 20:07:46] 2025-11-25 01:07:13,677 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 20:07:46] 2025-11-25 01:07:13,677 | INFO     | collected zombie processes
[2025-11-24 20:07:46] 2025-11-25 01:07:13,677 | INFO     | will attempt to kill all subprocesses of pid=2093706
[2025-11-24 20:07:46] 2025-11-25 01:07:14,145 | INFO     | process IDs to be killed: [2093706] (in reverse order)
[2025-11-24 20:07:46] 2025-11-25 01:07:14,282 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 20:07:46] 2025-11-25 01:07:14,282 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 20:07:46] 2025-11-25 01:07:14,299 | INFO     | did not find any defunct processes belonging to 2093706
[2025-11-24 20:07:46] 2025-11-25 01:07:14,316 | INFO     | did not find any defunct processes belonging to 2093706
[2025-11-24 20:07:46] 2025-11-25 01:07:14,317 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 20:07:46] 2025-11-25 01:07:14,317 | INFO     | ready for new job
[2025-11-24 20:07:46] 2025-11-25 01:07:14,317 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 20:07:46] 2025-11-25 01:07:14,321 | INFO     | ***************************************
[2025-11-24 20:07:46] 2025-11-25 01:07:14,322 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 20:07:46] 2025-11-25 01:07:14,322 | INFO     | ***************************************
[2025-11-24 20:07:46] 2025-11-25 01:07:14,322 | INFO     | 
[2025-11-24 20:07:46] 2025-11-25 01:07:14,323 | INFO     | architecture information:
[2025-11-24 20:07:46] 2025-11-25 01:07:14,324 | INFO     | executing command: cat /etc/os-release
[2025-11-24 20:07:46] 2025-11-25 01:07:14,340 | INFO     | cat /etc/os-release:
[2025-11-24 20:07:46] NAME="CentOS Linux"
[2025-11-24 20:07:46] VERSION="7 (Core)"
[2025-11-24 20:07:46] ID="centos"
[2025-11-24 20:07:46] ID_LIKE="rhel fedora"
[2025-11-24 20:07:46] VERSION_ID="7"
[2025-11-24 20:07:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 20:07:46] ANSI_COLOR="0;31"
[2025-11-24 20:07:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 20:07:46] HOME_URL="https://www.centos.org/"
[2025-11-24 20:07:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 20:07:46] 
[2025-11-24 20:07:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 20:07:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 20:07:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 20:07:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 20:07:46] 
[2025-11-24 20:07:46] 2025-11-25 01:07:14,340 | INFO     | ***************************************
[2025-11-24 20:07:46] 2025-11-25 01:07:14,844 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 20:07:46] 2025-11-25 01:07:14,866 | INFO     | sufficient remaining disk space (72389492736 B)
[2025-11-24 20:07:46] 2025-11-25 01:07:14,867 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 20:07:46] 2025-11-25 01:07:14,867 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 20:07:46] 2025-11-25 01:07:14,867 | INFO     | update_server=False
[2025-11-24 20:07:46] 2025-11-25 01:07:14,867 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 20:07:46] 2025-11-25 01:07:14,868 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 20:07:46] 2025-11-25 01:07:14,870 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:07:46] 2025-11-25 01:07:14,871 | INFO     | aborting loop
[2025-11-24 20:07:46] 2025-11-25 01:07:14,874 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 20:07:46] 2025-11-25 01:07:15,845 | INFO     | all payload control threads have been joined
[2025-11-24 20:07:46] 2025-11-25 01:07:15,863 | INFO     | all job control threads have been joined
[2025-11-24 20:07:46] 2025-11-25 01:07:15,873 | INFO     | [job] retrieve thread has finished
[2025-11-24 20:07:46] 2025-11-25 01:07:15,876 | INFO     | [job] job monitor thread has finished
[2025-11-24 20:07:46] 2025-11-25 01:07:15,974 | INFO     | all data control threads have been joined
[2025-11-24 20:07:46] 2025-11-25 01:07:16,192 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 20:07:46] 2025-11-25 01:07:16,212 | INFO     | [job] validate thread has finished
[2025-11-24 20:07:46] 2025-11-25 01:07:16,342 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 20:07:46] 2025-11-25 01:07:16,543 | INFO     | [data] copytool_in thread has finished
[2025-11-24 20:07:46] 2025-11-25 01:07:16,652 | INFO     | [payload] failed_post thread has finished
[2025-11-24 20:07:46] 2025-11-25 01:07:16,721 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 20:07:46] 2025-11-25 01:07:16,851 | INFO     | [payload] control thread has finished
[2025-11-24 20:07:46] 2025-11-25 01:07:16,868 | INFO     | [job] control thread has finished
[2025-11-24 20:07:46] 2025-11-25 01:07:16,878 | INFO     | [data] copytool_out thread has finished
[2025-11-24 20:07:46] 2025-11-25 01:07:16,979 | INFO     | [data] control thread has finished
[2025-11-24 20:07:46] 2025-11-25 01:07:17,234 | INFO     | [payload] validate_post thread has finished
[2025-11-24 20:07:46] 2025-11-25 01:07:17,255 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 20:07:46] 2025-11-25 01:07:17,602 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 20:07:46] 2025-11-25 01:07:18,610 | INFO     | [job] queue monitor thread has finished
[2025-11-24 20:07:46] 2025-11-25 01:07:18,875 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 20:07:46] 2025-11-25 01:07:26,784 | INFO     | [monitor] cgroup control has ended
[2025-11-24 20:07:46] 2025-11-25 01:07:26,800 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140161638004544)>', '<ExcThread(monitor, started 140160972855040)>']
[2025-11-24 20:07:46] 2025-11-25 01:07:31,826 | INFO     | all workflow threads have been joined
[2025-11-24 20:07:46] 2025-11-25 01:07:31,826 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 20:07:46] 2025-11-25 01:07:31,826 | INFO     | traces error code: 0
[2025-11-24 20:07:46] 2025-11-25 01:07:31,827 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 20:07:46] 2025-11-25 01:07:45,741 | INFO     | PID=2086416 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 20:07:46] 2025-11-25 01:07:45,742 | INFO     | .. there are 43 such processes running
[2025-11-24 20:07:46] 2025-11-25 01:07:45,743 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 20:07:46] 2025-11-25 01:07:45,744 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 20:07:46] 2025-11-25 01:07:45,744 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 20:07:46] 2025-11-25 01:07:45,744 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 20:07:46] 2025-11-25 01:07:45,744 | CRITICAL | thread 'MainThread' is not alive
[2025-11-24 20:07:46] 2025-11-25 01:07:45,744 | INFO     | [monitor] control thread has ended
[2025-11-24 20:07:46] 2025-11-25 01:07:45,948 [wrapper] ==== pilot stdout END ====
[2025-11-24 20:07:46] 2025-11-25 01:07:45,951 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 20:07:46] 2025-11-25 01:07:45,954 [wrapper] pilotpid: 2086416
[2025-11-24 20:07:46] 2025-11-25 01:07:45,960 [wrapper] Pilot exit status: 0
[2025-11-24 20:07:46] 2025-11-25 01:07:45,978 [wrapper] pandaids: 6895368982
[2025-11-24 20:07:46] 2025-11-25 01:07:46,063 [wrapper] cleanup supervisor_pilot  417921 2086417
[2025-11-24 20:07:46] 2025-11-25 01:07:46,067 [wrapper] Test setup, not cleaning
[2025-11-24 20:07:46] 2025-11-25 01:07:46,072 [wrapper] apfmon messages muted
[2025-11-24 20:07:46] 2025-11-25 01:07:46,076 [wrapper] ==== wrapper stdout END ====
[2025-11-24 20:07:46] 2025-11-25 01:07:46,082 [wrapper] ==== wrapper stderr END ====
[2025-11-24 20:07:46]  *** Error codes and diagnostics ***
[2025-11-24 20:07:46]     "exeErrorCode": 0,
[2025-11-24 20:07:46]     "exeErrorDiag": "",
[2025-11-24 20:07:46]     "pilotErrorCode": 0,
[2025-11-24 20:07:46]     "pilotErrorDiag": "",
[2025-11-24 20:07:46]  *** Listing of results directory ***
[2025-11-24 20:07:46] total 1328772
[2025-11-24 20:07:46] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 14:32 pilot3.tar.gz
[2025-11-24 20:07:46] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 14:46 queuedata.json
[2025-11-24 20:07:46] -rwx------. 1 boincer umatlas     36292 Nov 23 14:47 runpilot2-wrapper.sh
[2025-11-24 20:07:46] -rw-r--r--. 1 boincer umatlas       100 Nov 24 07:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 20:07:46] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 07:21 run_atlas
[2025-11-24 20:07:46] -rw-r--r--. 1 boincer umatlas       105 Nov 24 07:21 job.xml
[2025-11-24 20:07:46] -rw-r--r--. 2 boincer umatlas 410259315 Nov 24 07:21 EVNT.47483658._000874.pool.root.1
[2025-11-24 20:07:46] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 07:21 start_atlas.sh
[2025-11-24 20:07:46] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 07:21 shared
[2025-11-24 20:07:46] -rw-r--r--. 2 boincer umatlas    590104 Nov 24 07:21 input.tar.gz
[2025-11-24 20:07:46] -rw-r--r--. 1 boincer umatlas         0 Nov 24 07:21 boinc_lockfile
[2025-11-24 20:07:46] -rw-r--r--. 1 boincer umatlas      2786 Nov 24 07:21 pandaJob.out
[2025-11-24 20:07:46] -rw-------. 1 boincer umatlas        57 Nov 24 07:21 setup.sh.local
[2025-11-24 20:07:46] -rw-------. 1 boincer umatlas    988279 Nov 24 07:22 agis_schedconf.cvmfs.json
[2025-11-24 20:07:46] drwx------. 5 boincer umatlas      4096 Nov 24 07:22 pilot3
[2025-11-24 20:07:46] -rw-r--r--. 1 boincer umatlas       533 Nov 24 19:55 boinc_task_state.xml
[2025-11-24 20:07:46] -rw-r--r--. 1 boincer umatlas      6657 Nov 24 20:01 init_data.xml
[2025-11-24 20:07:46] -rw-------. 1 boincer umatlas 930086368 Nov 24 20:06 HITS.47556137._008609.pool.root.1
[2025-11-24 20:07:46] -rw-------. 1 boincer umatlas      1057 Nov 24 20:06 memory_monitor_summary.json
[2025-11-24 20:07:46] -rw-------. 1 boincer umatlas   1516227 Nov 24 20:06 agis_ddmendpoints.agis.ALL.json
[2025-11-24 20:07:46] -rw-------. 1 boincer umatlas   2088416 Nov 24 20:07 log.47556137._008609.job.log.tgz.1
[2025-11-24 20:07:46] -rw-------. 1 boincer umatlas      8616 Nov 24 20:07 heartbeat.json
[2025-11-24 20:07:46] -rw-r--r--. 1 boincer umatlas        29 Nov 24 20:07 wrapper_checkpoint.txt
[2025-11-24 20:07:46] -rw-------. 1 boincer umatlas        95 Nov 24 20:07 pilot_heartbeat.json
[2025-11-24 20:07:46] -rw-------. 1 boincer umatlas       893 Nov 24 20:07 pilotlog.txt
[2025-11-24 20:07:46] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 20:07 boinc_mmap_file
[2025-11-24 20:07:46] -rw-------. 1 boincer umatlas   6114766 Nov 24 20:07 log.47556137._008609.job.log.1
[2025-11-24 20:07:46] -rw-------. 1 boincer umatlas       353 Nov 24 20:07 output.list
[2025-11-24 20:07:46] -rw-r--r--. 1 boincer umatlas       620 Nov 24 20:07 runtime_log
[2025-11-24 20:07:46] -rw-------. 1 boincer umatlas   8222720 Nov 24 20:07 result.tar.gz
[2025-11-24 20:07:46] -rw-r--r--. 1 boincer umatlas      9328 Nov 24 20:07 runtime_log.err
[2025-11-24 20:07:46] -rw-------. 1 boincer umatlas       657 Nov 24 20:07 cZGNDmJEVh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmr9KKDmiN0fpn.diag
[2025-11-24 20:07:46] -rw-r--r--. 1 boincer umatlas     21334 Nov 24 20:07 stderr.txt
[2025-11-24 20:07:46] HITS file was successfully produced:
[2025-11-24 20:07:46] -rw-------. 1 boincer umatlas 930086368 Nov 24 20:06 shared/HITS.pool.root.1
[2025-11-24 20:07:46]  *** Contents of shared directory: ***
[2025-11-24 20:07:46] total 1317568
[2025-11-24 20:07:46] -rw-r--r--. 2 boincer umatlas 410259315 Nov 24 07:21 ATLAS.root_0
[2025-11-24 20:07:46] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 07:21 start_atlas.sh
[2025-11-24 20:07:46] -rw-r--r--. 2 boincer umatlas    590104 Nov 24 07:21 input.tar.gz
[2025-11-24 20:07:46] -rw-------. 1 boincer umatlas 930086368 Nov 24 20:06 HITS.pool.root.1
[2025-11-24 20:07:46] -rw-------. 1 boincer umatlas   8222720 Nov 24 20:07 result.tar.gz
20:07:47 (2082339): run_atlas exited; CPU time 292346.698481
20:07:47 (2082339): called boinc_finish(0)

</stderr_txt>
]]>

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