Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:08:22 (3137199): wrapper (7.7.26015): starting
11:08:22 (3137199): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 11:08:22] Arguments: --nthreads 9
[2025-11-24 11:08:22] Threads: 9
[2025-11-24 11:08:22] Checking for CVMFS
[2025-11-24 11:08:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 11:08:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 11:08:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 11:08:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 11:08:22] 2.13.3.0 11900 27390 393564 153250 2 380 28876215 32935937 30971 16776704 0 146729733 99.520 176043181 33500 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 11:08:22] CVMFS is ok
[2025-11-24 11:08:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 11:08:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 11:08:22] Further information can be found at the LHC@home message board.
[2025-11-24 11:08:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 11:08:22] Checking for apptainer binary...
[2025-11-24 11:08:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 11:08:22] Running /usr/bin/apptainer --version
[2025-11-24 11:08:22] apptainer version 1.4.4-1.el9
[2025-11-24 11:08:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 11:08:22] c6-12-27-1.aglt2.org
[2025-11-24 11:08:22] apptainer works
[2025-11-24 11:08:22] Set ATHENA_PROC_NUMBER=9
[2025-11-24 11:08:22] Set ATHENA_CORE_NUMBER=9
[2025-11-24 11:08:22] Starting ATLAS job with PandaID=6895368990
[2025-11-24 11:08:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 02:30:17]  *** The last 200 lines of the pilot log: ***
[2025-11-26 02:30:17] 2025-11-26 07:29:30,460 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:30:17] 2025-11-26 07:29:32,322 | INFO     | time since job start (141655s) is within the limit (172800.0s)
[2025-11-26 02:30:17] 2025-11-26 07:29:32,979 | INFO     | monitor loop #8704: job 0:6895368990 is in state 'finished'
[2025-11-26 02:30:17] 2025-11-26 07:29:32,979 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:30:17] 2025-11-26 07:29:34,330 | INFO     | time since job start (141657s) is within the limit (172800.0s)
[2025-11-26 02:30:17] 2025-11-26 07:29:35,497 | INFO     | monitor loop #8705: job 0:6895368990 is in state 'finished'
[2025-11-26 02:30:17] 2025-11-26 07:29:35,497 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:30:17] 2025-11-26 07:29:36,339 | INFO     | time since job start (141659s) is within the limit (172800.0s)
[2025-11-26 02:30:17] 2025-11-26 07:29:38,014 | INFO     | monitor loop #8706: job 0:6895368990 is in state 'finished'
[2025-11-26 02:30:17] 2025-11-26 07:29:38,014 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:30:17] 2025-11-26 07:29:38,789 | INFO     | PID=3143242 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 02:30:17] 2025-11-26 07:29:38,789 | INFO     | .. there are 52 such processes running
[2025-11-26 02:30:17] 2025-11-26 07:29:39,210 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 02:30:17] 2025-11-26 07:29:39,232 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2765.231729166666
[2025-11-26 02:30:17] 2025-11-26 07:29:39,263 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895368990/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 02:30:17] 2025-11-26 07:29:39,268 | INFO     | extracted standard info from prmon json
[2025-11-26 02:30:17] 2025-11-26 07:29:39,268 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 02:30:17] 2025-11-26 07:29:39,268 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 02:30:17] 2025-11-26 07:29:39,332 | INFO     | fitting pss+swap vs Time
[2025-11-26 02:30:17] 2025-11-26 07:29:39,348 | INFO     | sum of square deviations: 3877069007166.9556
[2025-11-26 02:30:17] 2025-11-26 07:29:39,665 | INFO     | sum of deviations: 10098010377145.29
[2025-11-26 02:30:17] 2025-11-26 07:29:39,665 | INFO     | mean x: 1764071310.3998277
[2025-11-26 02:30:17] 2025-11-26 07:29:39,665 | INFO     | mean y: 3082929.2507539853
[2025-11-26 02:30:17] 2025-11-26 07:29:39,665 | INFO     | intersect: -4591524586.249331
[2025-11-26 02:30:17] 2025-11-26 07:29:39,676 | INFO     | chi2: 22.766814981444465
[2025-11-26 02:30:17] 2025-11-26 07:29:39,687 | INFO     | sum of square deviations: 3852067181404.749
[2025-11-26 02:30:17] 2025-11-26 07:29:39,822 | INFO     | time since job start (141662s) is within the limit (172800.0s)
[2025-11-26 02:30:17] 2025-11-26 07:29:39,952 | INFO     | sum of deviations: 10918070180937.15
[2025-11-26 02:30:17] 2025-11-26 07:29:39,967 | INFO     | mean x: 1764071157.9019861
[2025-11-26 02:30:17] 2025-11-26 07:29:39,967 | INFO     | mean y: 3087930.6925734025
[2025-11-26 02:30:17] 2025-11-26 07:29:39,967 | INFO     | intersect: -4996890470.285685
[2025-11-26 02:30:17] 2025-11-26 07:29:39,970 | INFO     | chi2: 19.557160466762816
[2025-11-26 02:30:17] 2025-11-26 07:29:39,971 | INFO     | current chi2=19.557160466762816 (change=14.097951414361646 %)
[2025-11-26 02:30:17] 2025-11-26 07:29:39,971 | INFO     | right removable region: 2315
[2025-11-26 02:30:17] 2025-11-26 07:29:39,981 | INFO     | sum of square deviations: 3852065482307.139
[2025-11-26 02:30:17] 2025-11-26 07:29:40,321 | INFO     | sum of deviations: 9413673834481.592
[2025-11-26 02:30:17] 2025-11-26 07:29:40,321 | INFO     | mean x: 1764071462.9028497
[2025-11-26 02:30:17] 2025-11-26 07:29:40,321 | INFO     | mean y: 3087101.0470639034
[2025-11-26 02:30:17] 2025-11-26 07:29:40,321 | INFO     | intersect: -4307949003.805978
[2025-11-26 02:30:17] 2025-11-26 07:29:40,344 | INFO     | chi2: 20.61758808250557
[2025-11-26 02:30:17] 2025-11-26 07:29:40,345 | INFO     | current chi2=20.61758808250557 (change=9.440173782281667 %)
[2025-11-26 02:30:17] 2025-11-26 07:29:40,345 | INFO     | left removable region: 10
[2025-11-26 02:30:17] 2025-11-26 07:29:40,371 | INFO     | sum of square deviations: 3797439385838.1
[2025-11-26 02:30:17] 2025-11-26 07:29:40,603 | INFO     | monitor loop #8707: job 0:6895368990 is in state 'finished'
[2025-11-26 02:30:17] 2025-11-26 07:29:40,603 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:30:17] 2025-11-26 07:29:41,023 | INFO     | sum of deviations: 10147081190562.39
[2025-11-26 02:30:17] 2025-11-26 07:29:41,023 | INFO     | mean x: 1764071432.4065075
[2025-11-26 02:30:17] 2025-11-26 07:29:41,023 | INFO     | mean y: 3094581.122342733
[2025-11-26 02:30:17] 2025-11-26 07:29:41,024 | INFO     | intersect: -4710654403.874275
[2025-11-26 02:30:17] 2025-11-26 07:29:41,062 | INFO     | chi2: 16.690541103206254
[2025-11-26 02:30:17] 2025-11-26 07:29:41,062 | INFO     | current memory leak: 2.67 B/s (using 2305 data points, chi2=16.69)
[2025-11-26 02:30:17] 2025-11-26 07:29:41,116 | INFO     | could have reported an average CPU frequency of 2652 MHz (81 samples)
[2025-11-26 02:30:17] 2025-11-26 07:29:41,117 | INFO     | ..............................
[2025-11-26 02:30:17] 2025-11-26 07:29:41,117 | INFO     | . Timing measurements:
[2025-11-26 02:30:17] 2025-11-26 07:29:41,117 | INFO     | . get job = 0 s
[2025-11-26 02:30:17] 2025-11-26 07:29:41,117 | INFO     | . initial setup = 2 s
[2025-11-26 02:30:17] 2025-11-26 07:29:41,120 | INFO     | . payload setup = 8 s
[2025-11-26 02:30:17] 2025-11-26 07:29:41,120 | INFO     | . stage-in = 0 s
[2025-11-26 02:30:17] 2025-11-26 07:29:41,120 | INFO     | . payload execution = 141574 s
[2025-11-26 02:30:17] 2025-11-26 07:29:41,121 | INFO     | . stage-out = 11 s
[2025-11-26 02:30:17] 2025-11-26 07:29:41,121 | INFO     | . log creation = 2 s
[2025-11-26 02:30:17] 2025-11-26 07:29:41,121 | INFO     | ..............................
[2025-11-26 02:30:17] 2025-11-26 07:29:41,445 | INFO     | 
[2025-11-26 02:30:17] 2025-11-26 07:29:41,445 | INFO     | job summary report
[2025-11-26 02:30:17] 2025-11-26 07:29:41,446 | INFO     | --------------------------------------------------
[2025-11-26 02:30:17] 2025-11-26 07:29:41,446 | INFO     | PanDA job id: 6895368990
[2025-11-26 02:30:17] 2025-11-26 07:29:41,446 | INFO     | task id: 47556137
[2025-11-26 02:30:17] 2025-11-26 07:29:41,446 | INFO     | errors: (none)
[2025-11-26 02:30:17] 2025-11-26 07:29:41,446 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 02:30:17] 2025-11-26 07:29:41,446 | INFO     | pilot state: finished 
[2025-11-26 02:30:17] 2025-11-26 07:29:41,446 | INFO     | transexitcode: 0
[2025-11-26 02:30:17] 2025-11-26 07:29:41,446 | INFO     | exeerrorcode: 0
[2025-11-26 02:30:17] 2025-11-26 07:29:41,446 | INFO     | exeerrordiag: 
[2025-11-26 02:30:17] 2025-11-26 07:29:41,446 | INFO     | exitcode: 0
[2025-11-26 02:30:17] 2025-11-26 07:29:41,446 | INFO     | exitmsg: OK
[2025-11-26 02:30:17] 2025-11-26 07:29:41,446 | INFO     | cpuconsumptiontime: 288981 s
[2025-11-26 02:30:17] 2025-11-26 07:29:41,446 | INFO     | nevents: 1000
[2025-11-26 02:30:17] 2025-11-26 07:29:41,447 | INFO     | neventsw: 0
[2025-11-26 02:30:17] 2025-11-26 07:29:41,447 | INFO     | pid: 3153253
[2025-11-26 02:30:17] 2025-11-26 07:29:41,447 | INFO     | pgrp: 3153253
[2025-11-26 02:30:17] 2025-11-26 07:29:41,447 | INFO     | corecount: 9
[2025-11-26 02:30:17] 2025-11-26 07:29:41,447 | INFO     | event service: False
[2025-11-26 02:30:17] 2025-11-26 07:29:41,447 | INFO     | sizes: {0: 2284310, 7: 2284572, 11: 2284600, 141587: 2375384, 141600: 2384383, 141601: 2384439, 141646: 2384813}
[2025-11-26 02:30:17] 2025-11-26 07:29:41,447 | INFO     | --------------------------------------------------
[2025-11-26 02:30:17] 2025-11-26 07:29:41,447 | INFO     | 
[2025-11-26 02:30:17] 2025-11-26 07:29:41,447 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 02:30:17] 2025-11-26 07:29:41,517 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 02:30:17] 2025-11-26 07:29:41,518 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 02:30:17] 2025-11-26 07:29:41,518 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 02:30:17] 2025-11-26 07:29:41,518 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 02:30:17] 2025-11-26 07:29:41,518 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 02:30:17] 2025-11-26 07:29:41,518 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 02:30:17] 2025-11-26 07:29:41,518 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 02:30:17] 2025-11-26 07:29:41,518 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 02:30:17] 2025-11-26 07:29:41,518 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 02:30:17] 2025-11-26 07:29:41,518 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 02:30:17] 2025-11-26 07:29:41,518 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 02:30:17] 2025-11-26 07:29:41,518 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 02:30:17] 2025-11-26 07:29:41,519 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 02:30:17] 2025-11-26 07:29:41,519 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 02:30:17] 2025-11-26 07:29:41,519 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 02:30:17] 2025-11-26 07:29:41,519 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 02:30:17] 2025-11-26 07:29:41,519 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 02:30:17] 2025-11-26 07:29:41,519 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 02:30:17] 2025-11-26 07:29:41,519 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 02:30:17] 2025-11-26 07:29:41,519 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 02:30:17] 2025-11-26 07:29:41,519 | INFO     | job 6895368990 has completed (purged errors)
[2025-11-26 02:30:17] 2025-11-26 07:29:41,519 | INFO     | overall cleanup function is called
[2025-11-26 02:30:17] 2025-11-26 07:29:42,551 | INFO     | --- collectZombieJob: --- 10, [3153253]
[2025-11-26 02:30:17] 2025-11-26 07:29:42,551 | INFO     | zombie collector waiting for pid 3153253
[2025-11-26 02:30:17] 2025-11-26 07:29:42,551 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 02:30:17] 2025-11-26 07:29:42,552 | INFO     | collected zombie processes
[2025-11-26 02:30:17] 2025-11-26 07:29:42,552 | INFO     | will attempt to kill all subprocesses of pid=3153253
[2025-11-26 02:30:17] 2025-11-26 07:29:44,353 | INFO     | process IDs to be killed: [3153253] (in reverse order)
[2025-11-26 02:30:17] 2025-11-26 07:29:44,624 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 02:30:17] 2025-11-26 07:29:44,624 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 02:30:17] 2025-11-26 07:29:44,666 | INFO     | did not find any defunct processes belonging to 3153253
[2025-11-26 02:30:17] 2025-11-26 07:29:44,795 | INFO     | did not find any defunct processes belonging to 3153253
[2025-11-26 02:30:17] 2025-11-26 07:29:44,805 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 02:30:17] 2025-11-26 07:29:44,805 | INFO     | ready for new job
[2025-11-26 02:30:17] 2025-11-26 07:29:44,805 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 02:30:17] 2025-11-26 07:29:44,816 | INFO     | ***************************************
[2025-11-26 02:30:17] 2025-11-26 07:29:44,816 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 02:30:17] 2025-11-26 07:29:44,816 | INFO     | ***************************************
[2025-11-26 02:30:17] 2025-11-26 07:29:44,816 | INFO     | 
[2025-11-26 02:30:17] 2025-11-26 07:29:44,826 | INFO     | architecture information:
[2025-11-26 02:30:17] 2025-11-26 07:29:44,831 | INFO     | executing command: cat /etc/os-release
[2025-11-26 02:30:17] 2025-11-26 07:29:44,907 | INFO     | cat /etc/os-release:
[2025-11-26 02:30:17] NAME="CentOS Linux"
[2025-11-26 02:30:17] VERSION="7 (Core)"
[2025-11-26 02:30:17] ID="centos"
[2025-11-26 02:30:17] ID_LIKE="rhel fedora"
[2025-11-26 02:30:17] VERSION_ID="7"
[2025-11-26 02:30:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 02:30:17] ANSI_COLOR="0;31"
[2025-11-26 02:30:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 02:30:17] HOME_URL="https://www.centos.org/"
[2025-11-26 02:30:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 02:30:17] 
[2025-11-26 02:30:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 02:30:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 02:30:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 02:30:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 02:30:17] 
[2025-11-26 02:30:17] 2025-11-26 07:29:44,908 | INFO     | ***************************************
[2025-11-26 02:30:17] 2025-11-26 07:29:45,410 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 02:30:17] 2025-11-26 07:29:45,480 | INFO     | sufficient remaining disk space (84765835264 B)
[2025-11-26 02:30:17] 2025-11-26 07:29:45,480 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 02:30:17] 2025-11-26 07:29:45,484 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 02:30:17] 2025-11-26 07:29:45,484 | INFO     | update_server=False
[2025-11-26 02:30:17] 2025-11-26 07:29:45,484 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 02:30:17] 2025-11-26 07:29:45,605 | INFO     | all data control threads have been joined
[2025-11-26 02:30:17] 2025-11-26 07:29:45,659 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 02:30:17] 2025-11-26 07:29:45,659 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 02:30:17] 2025-11-26 07:29:45,659 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:30:17] 2025-11-26 07:29:45,660 | INFO     | will abort loop
[2025-11-26 02:30:17] 2025-11-26 07:29:46,017 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 02:30:17] 2025-11-26 07:29:46,448 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:30:17] 2025-11-26 07:29:46,489 | INFO     | [job] retrieve thread has finished
[2025-11-26 02:30:17] 2025-11-26 07:29:46,490 | INFO     | [monitor] cgroup control has ended
[2025-11-26 02:30:17] 2025-11-26 07:29:46,508 | INFO     | all payload control threads have been joined
[2025-11-26 02:30:17] 2025-11-26 07:29:46,611 | INFO     | [data] control thread has finished
[2025-11-26 02:30:17] 2025-11-26 07:29:46,660 | INFO     | [payload] failed_post thread has finished
[2025-11-26 02:30:17] 2025-11-26 07:29:46,661 | INFO     | [payload] validate_post thread has finished
[2025-11-26 02:30:17] 2025-11-26 07:29:46,665 | INFO     | [job] job monitor thread has finished
[2025-11-26 02:30:17] 2025-11-26 07:29:46,939 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 02:30:17] 2025-11-26 07:29:47,102 | INFO     | all job control threads have been joined
[2025-11-26 02:30:17] 2025-11-26 07:29:47,365 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 02:30:17] 2025-11-26 07:29:47,366 | INFO     | [data] copytool_in thread has finished
[2025-11-26 02:30:17] 2025-11-26 07:29:47,436 | INFO     | [job] validate thread has finished
[2025-11-26 02:30:17] 2025-11-26 07:29:47,454 | INFO     | [job] queue monitor thread has finished
[2025-11-26 02:30:17] 2025-11-26 07:29:47,514 | INFO     | [payload] control thread has finished
[2025-11-26 02:30:17] 2025-11-26 07:29:47,560 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 02:30:17] 2025-11-26 07:29:47,652 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 02:30:17] 2025-11-26 07:29:47,779 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 02:30:17] 2025-11-26 07:29:48,024 | INFO     | [data] copytool_out thread has finished
[2025-11-26 02:30:17] 2025-11-26 07:29:48,108 | INFO     | [job] control thread has finished
[2025-11-26 02:30:17] 2025-11-26 07:29:51,665 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 02:30:17] 2025-11-26 07:29:52,915 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140375520737088)>', '<ExcThread(monitor, started 140374890768128)>']
[2025-11-26 02:30:17] 2025-11-26 07:29:57,941 | INFO     | all workflow threads have been joined
[2025-11-26 02:30:17] 2025-11-26 07:29:57,944 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 02:30:17] 2025-11-26 07:29:57,944 | INFO     | traces error code: 0
[2025-11-26 02:30:17] 2025-11-26 07:29:57,944 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 02:30:17] 2025-11-26 07:30:15,814 | INFO     | PID=3143242 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 02:30:17] 2025-11-26 07:30:15,815 | INFO     | .. there are 52 such processes running
[2025-11-26 02:30:17] 2025-11-26 07:30:15,815 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 02:30:17] 2025-11-26 07:30:15,815 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 02:30:17] 2025-11-26 07:30:15,816 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 02:30:17] 2025-11-26 07:30:15,816 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 02:30:17] 2025-11-26 07:30:15,816 | INFO     | [monitor] control thread has ended
[2025-11-26 02:30:17] 2025-11-26 07:30:16,103 [wrapper] ==== pilot stdout END ====
[2025-11-26 02:30:17] 2025-11-26 07:30:16,137 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 02:30:17] 2025-11-26 07:30:16,150 [wrapper] pilotpid: 3143242
[2025-11-26 02:30:17] 2025-11-26 07:30:16,173 [wrapper] Pilot exit status: 0
[2025-11-26 02:30:17] 2025-11-26 07:30:16,264 [wrapper] pandaids: 6895368990
[2025-11-26 02:30:17] 2025-11-26 07:30:16,393 [wrapper] cleanup supervisor_pilot 4001232 3143243
[2025-11-26 02:30:17] 2025-11-26 07:30:16,403 [wrapper] Test setup, not cleaning
[2025-11-26 02:30:17] 2025-11-26 07:30:16,421 [wrapper] apfmon messages muted
[2025-11-26 02:30:17] 2025-11-26 07:30:16,438 [wrapper] ==== wrapper stdout END ====
[2025-11-26 02:30:17] 2025-11-26 07:30:16,447 [wrapper] ==== wrapper stderr END ====
[2025-11-26 02:30:17]  *** Error codes and diagnostics ***
[2025-11-26 02:30:17]     "exeErrorCode": 0,
[2025-11-26 02:30:17]     "exeErrorDiag": "",
[2025-11-26 02:30:17]     "pilotErrorCode": 0,
[2025-11-26 02:30:17]     "pilotErrorDiag": "",
[2025-11-26 02:30:17]  *** Listing of results directory ***
[2025-11-26 02:30:17] total 1334592
[2025-11-26 02:30:17] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 14:32 pilot3.tar.gz
[2025-11-26 02:30:17] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 14:44 queuedata.json
[2025-11-26 02:30:17] -rwx------. 1 boincer umatlas     36292 Nov 23 14:45 runpilot2-wrapper.sh
[2025-11-26 02:30:17] -rw-r--r--. 1 boincer umatlas       100 Nov 24 11:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 02:30:17] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 11:08 run_atlas
[2025-11-26 02:30:17] -rw-r--r--. 1 boincer umatlas       105 Nov 24 11:08 job.xml
[2025-11-26 02:30:17] -rw-r--r--. 2 boincer umatlas 408450960 Nov 24 11:08 EVNT.47483658._000875.pool.root.1
[2025-11-26 02:30:17] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 11:08 shared
[2025-11-26 02:30:17] -rw-r--r--. 2 boincer umatlas    590105 Nov 24 11:08 input.tar.gz
[2025-11-26 02:30:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 11:08 start_atlas.sh
[2025-11-26 02:30:17] -rw-r--r--. 1 boincer umatlas         0 Nov 24 11:08 boinc_lockfile
[2025-11-26 02:30:17] -rw-r--r--. 1 boincer umatlas      2786 Nov 24 11:08 pandaJob.out
[2025-11-26 02:30:17] -rw-------. 1 boincer umatlas        57 Nov 24 11:08 setup.sh.local
[2025-11-26 02:30:17] -rw-------. 1 boincer umatlas    987541 Nov 24 11:08 agis_schedconf.cvmfs.json
[2025-11-26 02:30:17] drwx------. 5 boincer umatlas      4096 Nov 24 11:08 pilot3
[2025-11-26 02:30:17] -rw-r--r--. 1 boincer umatlas       534 Nov 26 01:30 boinc_task_state.xml
[2025-11-26 02:30:17] -rw-r--r--. 1 boincer umatlas      6882 Nov 26 02:22 init_data.xml
[2025-11-26 02:30:17] -rw-------. 1 boincer umatlas 911551351 Nov 26 02:27 HITS.47556137._008617.pool.root.1
[2025-11-26 02:30:17] -rw-------. 1 boincer umatlas      1072 Nov 26 02:28 memory_monitor_summary.json
[2025-11-26 02:30:17] -rw-------. 1 boincer umatlas   1516240 Nov 26 02:28 agis_ddmendpoints.agis.ALL.json
[2025-11-26 02:30:17] -rw-------. 1 boincer umatlas   3231456 Nov 26 02:28 log.47556137._008617.job.log.tgz.1
[2025-11-26 02:30:17] -rw-------. 1 boincer umatlas      8652 Nov 26 02:29 heartbeat.json
[2025-11-26 02:30:17] -rw-r--r--. 1 boincer umatlas        30 Nov 26 02:30 wrapper_checkpoint.txt
[2025-11-26 02:30:17] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 02:30 boinc_mmap_file
[2025-11-26 02:30:17] -rw-------. 1 boincer umatlas       823 Nov 26 02:30 pilotlog.txt
[2025-11-26 02:30:17] -rw-------. 1 boincer umatlas        95 Nov 26 02:30 pilot_heartbeat.json
[2025-11-26 02:30:17] -rw-------. 1 boincer umatlas  18121943 Nov 26 02:30 log.47556137._008617.job.log.1
[2025-11-26 02:30:17] -rw-------. 1 boincer umatlas       353 Nov 26 02:30 output.list
[2025-11-26 02:30:17] -rw-r--r--. 1 boincer umatlas       620 Nov 26 02:30 runtime_log
[2025-11-26 02:30:17] -rw-------. 1 boincer umatlas  21370880 Nov 26 02:30 result.tar.gz
[2025-11-26 02:30:17] -rw-r--r--. 1 boincer umatlas      9354 Nov 26 02:30 runtime_log.err
[2025-11-26 02:30:17] -rw-------. 1 boincer umatlas       671 Nov 26 02:30 0ZDLDmtCVh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyiIKDmX6Qpen.diag
[2025-11-26 02:30:17] -rw-r--r--. 1 boincer umatlas     21841 Nov 26 02:30 stderr.txt
[2025-11-26 02:30:17] HITS file was successfully produced:
[2025-11-26 02:30:17] -rw-------. 1 boincer umatlas 911551351 Nov 26 02:27 shared/HITS.pool.root.1
[2025-11-26 02:30:17]  *** Contents of shared directory: ***
[2025-11-26 02:30:17] total 1310544
[2025-11-26 02:30:17] -rw-r--r--. 2 boincer umatlas 408450960 Nov 24 11:08 ATLAS.root_0
[2025-11-26 02:30:17] -rw-r--r--. 2 boincer umatlas    590105 Nov 24 11:08 input.tar.gz
[2025-11-26 02:30:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 11:08 start_atlas.sh
[2025-11-26 02:30:17] -rw-------. 1 boincer umatlas 911551351 Nov 26 02:27 HITS.pool.root.1
[2025-11-26 02:30:17] -rw-------. 1 boincer umatlas  21370880 Nov 26 02:30 result.tar.gz
02:30:19 (3137199): run_atlas exited; CPU time 294613.942605
02:30:19 (3137199): called boinc_finish(0)

</stderr_txt>
]]>

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