Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:41:34 (1583395): wrapper (7.7.26015): starting
23:41:34 (1583395): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 23:41:34] Arguments: --nthreads 8
[2025-11-24 23:41:34] Threads: 8
[2025-11-24 23:41:34] Checking for CVMFS
[2025-11-24 23:41:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 23:41:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 23:41:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 23:41:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 23:41:36] 2.13.2.0 8058 33932 293500 153270 1 325 23426319 40960000 11178 16776704 0 34941435 99.720 24069525 35432 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 23:41:36] CVMFS is ok
[2025-11-24 23:41:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 23:41:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 23:41:37] Further information can be found at the LHC@home message board.
[2025-11-24 23:41:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 23:41:37] Checking for apptainer binary...
[2025-11-24 23:41:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 23:41:37] Running /usr/bin/apptainer --version
[2025-11-24 23:41:37] apptainer version 1.4.4-1.el9
[2025-11-24 23:41:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 23:41:37] c-210-33-3.aglt2.org
[2025-11-24 23:41:37] apptainer works
[2025-11-24 23:41:37] Set ATHENA_PROC_NUMBER=8
[2025-11-24 23:41:37] Set ATHENA_CORE_NUMBER=8
[2025-11-24 23:41:37] Starting ATLAS job with PandaID=6895356896
[2025-11-24 23:41:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 10:53:55]  *** The last 200 lines of the pilot log: ***
[2025-11-26 10:53:55] 2025-11-26 15:53:06,094 | INFO     | monitor loop #7277: job 0:6895356896 is in state 'finished'
[2025-11-26 10:53:55] 2025-11-26 15:53:06,095 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:53:55] 2025-11-26 15:53:06,744 | INFO     | time since job start (126638s) is within the limit (172800.0s)
[2025-11-26 10:53:55] 2025-11-26 15:53:08,599 | INFO     | monitor loop #7278: job 0:6895356896 is in state 'finished'
[2025-11-26 10:53:55] 2025-11-26 15:53:08,600 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:53:55] 2025-11-26 15:53:08,762 | INFO     | time since job start (126640s) is within the limit (172800.0s)
[2025-11-26 10:53:55] 2025-11-26 15:53:10,769 | INFO     | time since job start (126642s) is within the limit (172800.0s)
[2025-11-26 10:53:55] 2025-11-26 15:53:11,104 | INFO     | monitor loop #7279: job 0:6895356896 is in state 'finished'
[2025-11-26 10:53:55] 2025-11-26 15:53:11,105 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:53:55] 2025-11-26 15:53:12,777 | INFO     | time since job start (126644s) is within the limit (172800.0s)
[2025-11-26 10:53:55] 2025-11-26 15:53:13,609 | INFO     | monitor loop #7280: job 0:6895356896 is in state 'finished'
[2025-11-26 10:53:55] 2025-11-26 15:53:13,610 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:53:55] 2025-11-26 15:53:14,786 | INFO     | time since job start (126646s) is within the limit (172800.0s)
[2025-11-26 10:53:55] 2025-11-26 15:53:16,029 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 10:53:55] 2025-11-26 15:53:16,061 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2730.3589107142866
[2025-11-26 10:53:55] 2025-11-26 15:53:16,091 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895356896/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 10:53:55] 2025-11-26 15:53:16,104 | INFO     | extracted standard info from prmon json
[2025-11-26 10:53:55] 2025-11-26 15:53:16,104 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 10:53:55] 2025-11-26 15:53:16,104 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 10:53:55] 2025-11-26 15:53:16,136 | INFO     | monitor loop #7281: job 0:6895356896 is in state 'finished'
[2025-11-26 10:53:55] 2025-11-26 15:53:16,137 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 10:53:55] 2025-11-26 15:53:16,276 | INFO     | fitting pss+swap vs Time
[2025-11-26 10:53:55] 2025-11-26 15:53:16,280 | INFO     | sum of square deviations: 2766032795075.3833
[2025-11-26 10:53:55] 2025-11-26 15:53:16,784 | INFO     | sum of deviations: 8959505012868.174
[2025-11-26 10:53:55] 2025-11-26 15:53:16,785 | INFO     | mean x: 1764109093.6407907
[2025-11-26 10:53:55] 2025-11-26 15:53:16,785 | INFO     | mean y: 2916417.1277724206
[2025-11-26 10:53:55] 2025-11-26 15:53:16,785 | INFO     | intersect: -5711240080.170822
[2025-11-26 10:53:55] 2025-11-26 15:53:16,834 | INFO     | chi2: 19.76191141259676
[2025-11-26 10:53:55] 2025-11-26 15:53:16,929 | INFO     | sum of square deviations: 2746077635373.884
[2025-11-26 10:53:55] 2025-11-26 15:53:17,393 | INFO     | sum of deviations: 9683270122123.754
[2025-11-26 10:53:55] 2025-11-26 15:53:17,393 | INFO     | mean x: 1764108941.1556308
[2025-11-26 10:53:55] 2025-11-26 15:53:17,393 | INFO     | mean y: 2921946.7491541808
[2025-11-26 10:53:55] 2025-11-26 15:53:17,410 | INFO     | intersect: -6217711870.013968
[2025-11-26 10:53:55] 2025-11-26 15:53:17,413 | INFO     | chi2: 16.34098606558245
[2025-11-26 10:53:55] 2025-11-26 15:53:17,414 | INFO     | current chi2=16.34098606558245 (change=17.310700749491893 %)
[2025-11-26 10:53:55] 2025-11-26 15:53:17,414 | INFO     | right removable region: 2068
[2025-11-26 10:53:55] 2025-11-26 15:53:17,416 | INFO     | sum of square deviations: 2746069866413.884
[2025-11-26 10:53:55] 2025-11-26 15:53:17,957 | INFO     | sum of deviations: 8135473678341.295
[2025-11-26 10:53:55] 2025-11-26 15:53:17,958 | INFO     | mean x: 1764109246.1556308
[2025-11-26 10:53:55] 2025-11-26 15:53:17,958 | INFO     | mean y: 2922712.166747221
[2025-11-26 10:53:55] 2025-11-26 15:53:17,958 | INFO     | intersect: -5223406200.054215
[2025-11-26 10:53:55] 2025-11-26 15:53:18,005 | INFO     | chi2: 15.869567601981544
[2025-11-26 10:53:55] 2025-11-26 15:53:18,006 | INFO     | current chi2=15.869567601981544 (change=19.69619096730762 %)
[2025-11-26 10:53:55] 2025-11-26 15:53:18,006 | INFO     | left removable region: 10
[2025-11-26 10:53:55] 2025-11-26 15:53:18,050 | INFO     | sum of square deviations: 2702499289225.725
[2025-11-26 10:53:55] 2025-11-26 15:53:18,505 | INFO     | sum of deviations: 8477889066662.838
[2025-11-26 10:53:55] 2025-11-26 15:53:18,506 | INFO     | mean x: 1764109215.6880467
[2025-11-26 10:53:55] 2025-11-26 15:53:18,506 | INFO     | mean y: 2933180.0184645285
[2025-11-26 10:53:55] 2025-11-26 15:53:18,506 | INFO     | intersect: -5531174559.327423
[2025-11-26 10:53:55] 2025-11-26 15:53:18,514 | INFO     | chi2: 10.357439155592386
[2025-11-26 10:53:55] 2025-11-26 15:53:18,515 | INFO     | current memory leak: 3.14 B/s (using 2058 data points, chi2=10.36)
[2025-11-26 10:53:55] 2025-11-26 15:53:18,517 | INFO     | could have reported an average CPU frequency of 2775 MHz (72 samples)
[2025-11-26 10:53:55] 2025-11-26 15:53:18,530 | INFO     | ..............................
[2025-11-26 10:53:55] 2025-11-26 15:53:18,530 | INFO     | . Timing measurements:
[2025-11-26 10:53:55] 2025-11-26 15:53:18,530 | INFO     | . get job = 0 s
[2025-11-26 10:53:55] 2025-11-26 15:53:18,530 | INFO     | . initial setup = 5 s
[2025-11-26 10:53:55] 2025-11-26 15:53:18,530 | INFO     | . payload setup = 34 s
[2025-11-26 10:53:55] 2025-11-26 15:53:18,530 | INFO     | . stage-in = 0 s
[2025-11-26 10:53:55] 2025-11-26 15:53:18,530 | INFO     | . payload execution = 126502 s
[2025-11-26 10:53:55] 2025-11-26 15:53:18,530 | INFO     | . stage-out = 10 s
[2025-11-26 10:53:55] 2025-11-26 15:53:18,530 | INFO     | . log creation = 3 s
[2025-11-26 10:53:55] 2025-11-26 15:53:18,530 | INFO     | ..............................
[2025-11-26 10:53:55] 2025-11-26 15:53:18,610 | INFO     | PID=1590837 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 10:53:55] 2025-11-26 15:53:18,610 | INFO     | .. there are 11 such processes running
[2025-11-26 10:53:55] 2025-11-26 15:53:18,875 | INFO     | 
[2025-11-26 10:53:55] 2025-11-26 15:53:18,876 | INFO     | job summary report
[2025-11-26 10:53:55] 2025-11-26 15:53:18,876 | INFO     | --------------------------------------------------
[2025-11-26 10:53:55] 2025-11-26 15:53:18,876 | INFO     | PanDA job id: 6895356896
[2025-11-26 10:53:55] 2025-11-26 15:53:18,876 | INFO     | task id: 47556149
[2025-11-26 10:53:55] 2025-11-26 15:53:18,876 | INFO     | errors: (none)
[2025-11-26 10:53:55] 2025-11-26 15:53:18,876 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 10:53:55] 2025-11-26 15:53:18,876 | INFO     | pilot state: finished 
[2025-11-26 10:53:55] 2025-11-26 15:53:18,876 | INFO     | transexitcode: 0
[2025-11-26 10:53:55] 2025-11-26 15:53:18,876 | INFO     | exeerrorcode: 0
[2025-11-26 10:53:55] 2025-11-26 15:53:18,876 | INFO     | exeerrordiag: 
[2025-11-26 10:53:55] 2025-11-26 15:53:18,876 | INFO     | exitcode: 0
[2025-11-26 10:53:55] 2025-11-26 15:53:18,877 | INFO     | exitmsg: OK
[2025-11-26 10:53:55] 2025-11-26 15:53:18,877 | INFO     | cpuconsumptiontime: 247708 s
[2025-11-26 10:53:55] 2025-11-26 15:53:18,877 | INFO     | nevents: 1000
[2025-11-26 10:53:55] 2025-11-26 15:53:18,877 | INFO     | neventsw: 0
[2025-11-26 10:53:55] 2025-11-26 15:53:18,877 | INFO     | pid: 1604445
[2025-11-26 10:53:55] 2025-11-26 15:53:18,877 | INFO     | pgrp: 1604445
[2025-11-26 10:53:55] 2025-11-26 15:53:18,877 | INFO     | corecount: 8
[2025-11-26 10:53:55] 2025-11-26 15:53:18,877 | INFO     | event service: False
[2025-11-26 10:53:55] 2025-11-26 15:53:18,877 | INFO     | sizes: {0: 2283981, 1: 2284065, 2: 2284093, 3: 2284264, 14: 2284292, 23: 2284582, 24: 2284738, 126541: 2367218, 126542: 2367217, 126554: 2376272, 126558: 2376328, 
[2025-11-26 10:53:55] 2025-11-26 15:53:18,877 | INFO     | --------------------------------------------------
[2025-11-26 10:53:55] 2025-11-26 15:53:18,877 | INFO     | 
[2025-11-26 10:53:55] 2025-11-26 15:53:18,877 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 10:53:55] 2025-11-26 15:53:18,957 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 10:53:55] 2025-11-26 15:53:18,957 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 10:53:55] 2025-11-26 15:53:18,957 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 10:53:55] 2025-11-26 15:53:18,957 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 10:53:55] 2025-11-26 15:53:18,958 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 10:53:55] 2025-11-26 15:53:18,958 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 10:53:55] 2025-11-26 15:53:18,958 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 10:53:55] 2025-11-26 15:53:18,958 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 10:53:55] 2025-11-26 15:53:18,958 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 10:53:55] 2025-11-26 15:53:18,958 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 10:53:55] 2025-11-26 15:53:18,958 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 10:53:55] 2025-11-26 15:53:18,958 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 10:53:55] 2025-11-26 15:53:18,958 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 10:53:55] 2025-11-26 15:53:18,958 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 10:53:55] 2025-11-26 15:53:18,958 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 10:53:55] 2025-11-26 15:53:18,958 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 10:53:55] 2025-11-26 15:53:18,958 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 10:53:55] 2025-11-26 15:53:18,959 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 10:53:55] 2025-11-26 15:53:18,959 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 10:53:55] 2025-11-26 15:53:18,959 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 10:53:55] 2025-11-26 15:53:18,959 | INFO     | job 6895356896 has completed (purged errors)
[2025-11-26 10:53:55] 2025-11-26 15:53:18,959 | INFO     | overall cleanup function is called
[2025-11-26 10:53:55] 2025-11-26 15:53:19,991 | INFO     | --- collectZombieJob: --- 10, [1604445]
[2025-11-26 10:53:55] 2025-11-26 15:53:19,992 | INFO     | zombie collector waiting for pid 1604445
[2025-11-26 10:53:55] 2025-11-26 15:53:19,992 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 10:53:55] 2025-11-26 15:53:19,992 | INFO     | collected zombie processes
[2025-11-26 10:53:55] 2025-11-26 15:53:19,992 | INFO     | will attempt to kill all subprocesses of pid=1604445
[2025-11-26 10:53:55] 2025-11-26 15:53:20,619 | INFO     | process IDs to be killed: [1604445] (in reverse order)
[2025-11-26 10:53:55] 2025-11-26 15:53:20,815 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 10:53:55] 2025-11-26 15:53:20,815 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 10:53:55] 2025-11-26 15:53:20,839 | INFO     | did not find any defunct processes belonging to 1604445
[2025-11-26 10:53:55] 2025-11-26 15:53:20,857 | INFO     | did not find any defunct processes belonging to 1604445
[2025-11-26 10:53:55] 2025-11-26 15:53:20,863 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 10:53:55] 2025-11-26 15:53:20,864 | INFO     | ready for new job
[2025-11-26 10:53:55] 2025-11-26 15:53:20,864 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 10:53:55] 2025-11-26 15:53:20,885 | INFO     | ***************************************
[2025-11-26 10:53:55] 2025-11-26 15:53:20,885 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 10:53:55] 2025-11-26 15:53:20,885 | INFO     | ***************************************
[2025-11-26 10:53:55] 2025-11-26 15:53:20,885 | INFO     | 
[2025-11-26 10:53:55] 2025-11-26 15:53:20,978 | INFO     | architecture information:
[2025-11-26 10:53:55] 2025-11-26 15:53:20,984 | INFO     | executing command: cat /etc/os-release
[2025-11-26 10:53:55] 2025-11-26 15:53:21,026 | INFO     | cat /etc/os-release:
[2025-11-26 10:53:55] NAME="CentOS Linux"
[2025-11-26 10:53:55] VERSION="7 (Core)"
[2025-11-26 10:53:55] ID="centos"
[2025-11-26 10:53:55] ID_LIKE="rhel fedora"
[2025-11-26 10:53:55] VERSION_ID="7"
[2025-11-26 10:53:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 10:53:55] ANSI_COLOR="0;31"
[2025-11-26 10:53:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 10:53:55] HOME_URL="https://www.centos.org/"
[2025-11-26 10:53:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 10:53:55] 
[2025-11-26 10:53:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 10:53:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 10:53:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 10:53:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 10:53:55] 
[2025-11-26 10:53:55] 2025-11-26 15:53:21,034 | INFO     | ***************************************
[2025-11-26 10:53:55] 2025-11-26 15:53:21,538 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 10:53:55] 2025-11-26 15:53:21,680 | INFO     | sufficient remaining disk space (69390565376 B)
[2025-11-26 10:53:55] 2025-11-26 15:53:21,681 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 10:53:55] 2025-11-26 15:53:21,681 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 10:53:55] 2025-11-26 15:53:21,681 | INFO     | update_server=False
[2025-11-26 10:53:55] 2025-11-26 15:53:21,681 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 10:53:55] 2025-11-26 15:53:22,258 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:53:55] 2025-11-26 15:53:22,259 | INFO     | aborting loop
[2025-11-26 10:53:55] 2025-11-26 15:53:22,654 | INFO     | all data control threads have been joined
[2025-11-26 10:53:55] 2025-11-26 15:53:22,688 | INFO     | [job] retrieve thread has finished
[2025-11-26 10:53:55] 2025-11-26 15:53:22,785 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 10:53:55] 2025-11-26 15:53:22,809 | INFO     | all payload control threads have been joined
[2025-11-26 10:53:55] 2025-11-26 15:53:22,827 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 10:53:55] 2025-11-26 15:53:23,014 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 10:53:55] 2025-11-26 15:53:23,265 | INFO     | [job] job monitor thread has finished
[2025-11-26 10:53:55] 2025-11-26 15:53:23,360 | INFO     | [payload] validate_post thread has finished
[2025-11-26 10:53:55] 2025-11-26 15:53:23,456 | INFO     | all job control threads have been joined
[2025-11-26 10:53:55] 2025-11-26 15:53:23,661 | INFO     | [data] control thread has finished
[2025-11-26 10:53:55] 2025-11-26 15:53:23,704 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 10:53:55] 2025-11-26 15:53:23,759 | INFO     | [data] copytool_in thread has finished
[2025-11-26 10:53:55] 2025-11-26 15:53:23,772 | INFO     | [job] validate thread has finished
[2025-11-26 10:53:55] 2025-11-26 15:53:23,815 | INFO     | [payload] control thread has finished
[2025-11-26 10:53:55] 2025-11-26 15:53:23,818 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 10:53:55] 2025-11-26 15:53:24,015 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 10:53:55] 2025-11-26 15:53:24,022 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:53:55] 2025-11-26 15:53:24,162 | INFO     | [payload] failed_post thread has finished
[2025-11-26 10:53:55] 2025-11-26 15:53:24,462 | INFO     | [job] control thread has finished
[2025-11-26 10:53:55] 2025-11-26 15:53:24,867 | INFO     | [data] copytool_out thread has finished
[2025-11-26 10:53:55] 2025-11-26 15:53:25,027 | INFO     | [job] queue monitor thread has finished
[2025-11-26 10:53:55] 2025-11-26 15:53:25,935 | INFO     | [monitor] cgroup control has ended
[2025-11-26 10:53:55] 2025-11-26 15:53:26,825 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 10:53:55] 2025-11-26 15:53:27,753 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139873996531520)>', '<ExcThread(monitor, started 139873486874368)>']
[2025-11-26 10:53:55] 2025-11-26 15:53:32,781 | INFO     | all workflow threads have been joined
[2025-11-26 10:53:55] 2025-11-26 15:53:32,781 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 10:53:55] 2025-11-26 15:53:32,781 | INFO     | traces error code: 0
[2025-11-26 10:53:55] 2025-11-26 15:53:32,781 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 10:53:55] 2025-11-26 15:53:53,737 | INFO     | PID=1590837 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 10:53:55] 2025-11-26 15:53:53,737 | INFO     | .. there are 11 such processes running
[2025-11-26 10:53:55] 2025-11-26 15:53:53,738 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 10:53:55] 2025-11-26 15:53:53,738 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 10:53:55] 2025-11-26 15:53:53,738 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 10:53:55] 2025-11-26 15:53:53,738 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 10:53:55] 2025-11-26 15:53:53,738 | INFO     | [monitor] control thread has ended
[2025-11-26 10:53:55] 2025-11-26 15:53:54,495 [wrapper] ==== pilot stdout END ====
[2025-11-26 10:53:55] 2025-11-26 15:53:54,543 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 10:53:55] 2025-11-26 15:53:54,580 [wrapper] pilotpid: 1590837
[2025-11-26 10:53:55] 2025-11-26 15:53:54,614 [wrapper] Pilot exit status: 0
[2025-11-26 10:53:55] 2025-11-26 15:53:54,760 [wrapper] pandaids: 6895356896
[2025-11-26 10:53:55] 2025-11-26 15:53:54,891 [wrapper] cleanup supervisor_pilot  524675 1590838
[2025-11-26 10:53:55] 2025-11-26 15:53:54,929 [wrapper] Test setup, not cleaning
[2025-11-26 10:53:55] 2025-11-26 15:53:54,960 [wrapper] apfmon messages muted
[2025-11-26 10:53:55] 2025-11-26 15:53:55,001 [wrapper] ==== wrapper stdout END ====
[2025-11-26 10:53:55] 2025-11-26 15:53:55,036 [wrapper] ==== wrapper stderr END ====
[2025-11-26 10:53:55]  *** Error codes and diagnostics ***
[2025-11-26 10:53:55]     "exeErrorCode": 0,
[2025-11-26 10:53:55]     "exeErrorDiag": "",
[2025-11-26 10:53:55]     "pilotErrorCode": 0,
[2025-11-26 10:53:55]     "pilotErrorDiag": "",
[2025-11-26 10:53:55]  *** Listing of results directory ***
[2025-11-26 10:53:55] total 1324504
[2025-11-26 10:53:55] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 06:12 pilot3.tar.gz
[2025-11-26 10:53:55] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 06:27 queuedata.json
[2025-11-26 10:53:55] -rwx------. 1 boincer umatlas     36292 Nov 23 06:28 runpilot2-wrapper.sh
[2025-11-26 10:53:55] -rw-r--r--. 1 boincer umatlas       100 Nov 24 23:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 10:53:55] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 23:41 run_atlas
[2025-11-26 10:53:55] -rw-r--r--. 1 boincer umatlas       105 Nov 24 23:41 job.xml
[2025-11-26 10:53:55] -rw-r--r--. 2 boincer umatlas 408740208 Nov 24 23:41 EVNT.47483658._001157.pool.root.1
[2025-11-26 10:53:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 23:41 start_atlas.sh
[2025-11-26 10:53:55] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 23:41 shared
[2025-11-26 10:53:55] -rw-r--r--. 2 boincer umatlas    590104 Nov 24 23:41 input.tar.gz
[2025-11-26 10:53:55] -rw-r--r--. 1 boincer umatlas         0 Nov 24 23:41 boinc_lockfile
[2025-11-26 10:53:55] -rw-r--r--. 1 boincer umatlas      2784 Nov 24 23:41 pandaJob.out
[2025-11-26 10:53:55] -rw-------. 1 boincer umatlas        57 Nov 24 23:41 setup.sh.local
[2025-11-26 10:53:55] -rw-------. 1 boincer umatlas    991801 Nov 24 23:42 agis_schedconf.cvmfs.json
[2025-11-26 10:53:55] drwx------. 5 boincer umatlas      4096 Nov 24 23:42 pilot3
[2025-11-26 10:53:55] -rw-r--r--. 1 boincer umatlas       534 Nov 26 10:24 boinc_task_state.xml
[2025-11-26 10:53:55] -rw-r--r--. 1 boincer umatlas      6844 Nov 26 10:45 init_data.xml
[2025-11-26 10:53:55] -rw-------. 1 boincer umatlas 906861411 Nov 26 10:50 HITS.47556149._001440.pool.root.1
[2025-11-26 10:53:55] -rw-------. 1 boincer umatlas      1070 Nov 26 10:52 memory_monitor_summary.json
[2025-11-26 10:53:55] -rw-------. 1 boincer umatlas   1516240 Nov 26 10:52 agis_ddmendpoints.agis.ALL.json
[2025-11-26 10:53:55] -rw-------. 1 boincer umatlas   2867750 Nov 26 10:52 log.47556149._001440.job.log.tgz.1
[2025-11-26 10:53:55] -rw-------. 1 boincer umatlas      8645 Nov 26 10:53 heartbeat.json
[2025-11-26 10:53:55] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 10:53 boinc_mmap_file
[2025-11-26 10:53:55] -rw-r--r--. 1 boincer umatlas        30 Nov 26 10:53 wrapper_checkpoint.txt
[2025-11-26 10:53:55] -rw-------. 1 boincer umatlas       823 Nov 26 10:53 pilotlog.txt
[2025-11-26 10:53:55] -rw-------. 1 boincer umatlas        95 Nov 26 10:53 pilot_heartbeat.json
[2025-11-26 10:53:55] -rw-------. 1 boincer umatlas  15517102 Nov 26 10:53 log.47556149._001440.job.log.1
[2025-11-26 10:53:55] -rw-------. 1 boincer umatlas       353 Nov 26 10:53 output.list
[2025-11-26 10:53:55] -rw-r--r--. 1 boincer umatlas       620 Nov 26 10:53 runtime_log
[2025-11-26 10:53:55] -rw-------. 1 boincer umatlas  18401280 Nov 26 10:53 result.tar.gz
[2025-11-26 10:53:55] -rw-r--r--. 1 boincer umatlas      9354 Nov 26 10:53 runtime_log.err
[2025-11-26 10:53:55] -rw-------. 1 boincer umatlas       669 Nov 26 10:53 ly8LDmvRNh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDqKKDmV3zwDm.diag
[2025-11-26 10:53:55] -rw-r--r--. 1 boincer umatlas     21903 Nov 26 10:53 stderr.txt
[2025-11-26 10:53:55] HITS file was successfully produced:
[2025-11-26 10:53:55] -rw-------. 1 boincer umatlas 906861411 Nov 26 10:50 shared/HITS.pool.root.1
[2025-11-26 10:53:55]  *** Contents of shared directory: ***
[2025-11-26 10:53:55] total 1303348
[2025-11-26 10:53:55] -rw-r--r--. 2 boincer umatlas 408740208 Nov 24 23:41 ATLAS.root_0
[2025-11-26 10:53:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 23:41 start_atlas.sh
[2025-11-26 10:53:55] -rw-r--r--. 2 boincer umatlas    590104 Nov 24 23:41 input.tar.gz
[2025-11-26 10:53:55] -rw-------. 1 boincer umatlas 906861411 Nov 26 10:50 HITS.pool.root.1
[2025-11-26 10:53:55] -rw-------. 1 boincer umatlas  18401280 Nov 26 10:53 result.tar.gz
10:53:57 (1583395): run_atlas exited; CPU time 250374.309643
10:53:57 (1583395): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN