Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:19 (3396884): wrapper (7.7.26015): starting
00:05:19 (3396884): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 00:05:19] Arguments: --nthreads 12
[2025-11-24 00:05:19] Threads: 12
[2025-11-24 00:05:19] Checking for CVMFS
[2025-11-24 00:05:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:05:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:05:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:05:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:05:20] 2.13.2.0 5195 33242 175524 153233 2 365 29303192 40960001 20993 16776704 0 62159659 99.764 34140519 37806 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:05:20] CVMFS is ok
[2025-11-24 00:05:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:05:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:05:20] Further information can be found at the LHC@home message board.
[2025-11-24 00:05:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:05:20] Checking for apptainer binary...
[2025-11-24 00:05:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:05:20] Running /usr/bin/apptainer --version
[2025-11-24 00:05:20] apptainer version 1.4.4-1.el9
[2025-11-24 00:05:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:05:20] c-212-19.aglt2.org
[2025-11-24 00:05:20] apptainer works
[2025-11-24 00:05:20] Set ATHENA_PROC_NUMBER=12
[2025-11-24 00:05:20] Set ATHENA_CORE_NUMBER=12
[2025-11-24 00:05:20] Starting ATLAS job with PandaID=6895356777
[2025-11-24 00:05:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 01:52:27]  *** The last 200 lines of the pilot log: ***
[2025-11-25 01:52:27] 2025-11-25 06:51:41,118 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-25 01:52:27] 2025-11-25 06:51:41,118 | INFO     | log transfer has been attempted: DONE
[2025-11-25 01:52:27] 2025-11-25 06:51:41,118 | INFO     | job 6895356777 has finished - writing final server update
[2025-11-25 01:52:27] 2025-11-25 06:51:41,118 | INFO     | total number of processed events: 1000 (read)
[2025-11-25 01:52:27] 2025-11-25 06:51:41,124 | INFO     | executing command: lscpu
[2025-11-25 01:52:27] 2025-11-25 06:51:41,237 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 01:52:27] 2025-11-25 06:51:42,442 | INFO     | monitor loop #6160: job 0:6895356777 is in state 'finished'
[2025-11-25 01:52:27] 2025-11-25 06:51:42,442 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:52:27] 2025-11-25 06:51:42,768 | INFO     | time since job start (92762s) is within the limit (172800.0s)
[2025-11-25 01:52:27] 2025-11-25 06:51:44,588 | INFO     | PID=3403082 has CPU usage=14.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-25 01:52:27] 2025-11-25 06:51:44,588 | INFO     | .. there are 20 such processes running
[2025-11-25 01:52:27] 2025-11-25 06:51:44,973 | INFO     | monitor loop #6161: job 0:6895356777 is in state 'finished'
[2025-11-25 01:52:27] 2025-11-25 06:51:44,973 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:52:27] 2025-11-25 06:51:45,589 | INFO     | time since job start (92765s) is within the limit (172800.0s)
[2025-11-25 01:52:27] 2025-11-25 06:51:47,478 | INFO     | monitor loop #6162: job 0:6895356777 is in state 'finished'
[2025-11-25 01:52:27] 2025-11-25 06:51:47,478 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 01:52:27] 2025-11-25 06:51:47,597 | INFO     | time since job start (92767s) is within the limit (172800.0s)
[2025-11-25 01:52:27] 2025-11-25 06:51:47,747 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 01:52:27] 2025-11-25 06:51:47,777 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3089.906354166665
[2025-11-25 01:52:27] 2025-11-25 06:51:47,802 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6895356777/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 01:52:27] 2025-11-25 06:51:47,803 | INFO     | extracted standard info from prmon json
[2025-11-25 01:52:27] 2025-11-25 06:51:47,803 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 01:52:27] 2025-11-25 06:51:47,803 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 01:52:27] 2025-11-25 06:51:47,823 | INFO     | fitting pss+swap vs Time
[2025-11-25 01:52:27] 2025-11-25 06:51:47,825 | INFO     | sum of square deviations: 1088784390211.4978
[2025-11-25 01:52:27] 2025-11-25 06:51:47,900 | INFO     | sum of deviations: 8423323326024.956
[2025-11-25 01:52:27] 2025-11-25 06:51:47,900 | INFO     | mean x: 1764007112.1243422
[2025-11-25 01:52:27] 2025-11-25 06:51:47,900 | INFO     | mean y: 4025906.8414473683
[2025-11-25 01:52:27] 2025-11-25 06:51:47,900 | INFO     | intersect: -13643122590.525005
[2025-11-25 01:52:27] 2025-11-25 06:51:47,901 | INFO     | chi2: 53.97217804548634
[2025-11-25 01:52:27] 2025-11-25 06:51:47,937 | INFO     | sum of square deviations: 1078075134680.6027
[2025-11-25 01:52:27] 2025-11-25 06:51:48,016 | INFO     | sum of deviations: 9288475660879.352
[2025-11-25 01:52:27] 2025-11-25 06:51:48,016 | INFO     | mean x: 1764006959.6363037
[2025-11-25 01:52:27] 2025-11-25 06:51:48,016 | INFO     | mean y: 4038224.899009901
[2025-11-25 01:52:27] 2025-11-25 06:51:48,016 | INFO     | intersect: -15194286254.644705
[2025-11-25 01:52:27] 2025-11-25 06:51:48,018 | INFO     | chi2: 48.55938624722479
[2025-11-25 01:52:27] 2025-11-25 06:51:48,018 | INFO     | current chi2=48.55938624722479 (change=10.028855596118031 %)
[2025-11-25 01:52:27] 2025-11-25 06:51:48,018 | INFO     | right removable region: 1514
[2025-11-25 01:52:27] 2025-11-25 06:51:48,019 | INFO     | sum of square deviations: 1078071774190.6031
[2025-11-25 01:52:27] 2025-11-25 06:51:48,060 | INFO     | sum of deviations: 7620990966527.868
[2025-11-25 01:52:27] 2025-11-25 06:51:48,061 | INFO     | mean x: 1764007264.6363037
[2025-11-25 01:52:27] 2025-11-25 06:51:48,061 | INFO     | mean y: 4037327.3663366335
[2025-11-25 01:52:27] 2025-11-25 06:51:48,061 | INFO     | intersect: -12465896261.958855
[2025-11-25 01:52:27] 2025-11-25 06:51:48,062 | INFO     | chi2: 50.67822373704795
[2025-11-25 01:52:27] 2025-11-25 06:51:48,063 | INFO     | current chi2=50.67822373704795 (change=6.103059812895319 %)
[2025-11-25 01:52:27] 2025-11-25 06:51:48,063 | INFO     | left removable region: 10
[2025-11-25 01:52:27] 2025-11-25 06:51:48,064 | INFO     | sum of square deviations: 1054762572451.5583
[2025-11-25 01:52:27] 2025-11-25 06:51:48,111 | INFO     | sum of deviations: 8319218760262.23
[2025-11-25 01:52:27] 2025-11-25 06:51:48,111 | INFO     | mean x: 1764007234.1136968
[2025-11-25 01:52:27] 2025-11-25 06:51:48,111 | INFO     | mean y: 4056552.4022606383
[2025-11-25 01:52:27] 2025-11-25 06:51:48,111 | INFO     | intersect: -13909180851.507362
[2025-11-25 01:52:27] 2025-11-25 06:51:48,112 | INFO     | chi2: 44.07582821415877
[2025-11-25 01:52:27] 2025-11-25 06:51:48,113 | INFO     | current memory leak: 7.89 B/s (using 1504 data points, chi2=44.08)
[2025-11-25 01:52:27] 2025-11-25 06:51:48,114 | INFO     | could have reported an average CPU frequency of 3113 MHz (54 samples)
[2025-11-25 01:52:27] 2025-11-25 06:51:48,114 | INFO     | ..............................
[2025-11-25 01:52:27] 2025-11-25 06:51:48,114 | INFO     | . Timing measurements:
[2025-11-25 01:52:27] 2025-11-25 06:51:48,114 | INFO     | . get job = 0 s
[2025-11-25 01:52:27] 2025-11-25 06:51:48,114 | INFO     | . initial setup = 2 s
[2025-11-25 01:52:27] 2025-11-25 06:51:48,114 | INFO     | . payload setup = 10 s
[2025-11-25 01:52:27] 2025-11-25 06:51:48,114 | INFO     | . stage-in = 0 s
[2025-11-25 01:52:27] 2025-11-25 06:51:48,115 | INFO     | . payload execution = 92722 s
[2025-11-25 01:52:27] 2025-11-25 06:51:48,115 | INFO     | . stage-out = 4 s
[2025-11-25 01:52:27] 2025-11-25 06:51:48,115 | INFO     | . log creation = 0 s
[2025-11-25 01:52:27] 2025-11-25 06:51:48,115 | INFO     | ..............................
[2025-11-25 01:52:27] 2025-11-25 06:51:48,622 | INFO     | 
[2025-11-25 01:52:27] 2025-11-25 06:51:48,623 | INFO     | job summary report
[2025-11-25 01:52:27] 2025-11-25 06:51:48,623 | INFO     | --------------------------------------------------
[2025-11-25 01:52:27] 2025-11-25 06:51:48,623 | INFO     | PanDA job id: 6895356777
[2025-11-25 01:52:27] 2025-11-25 06:51:48,623 | INFO     | task id: 47556149
[2025-11-25 01:52:27] 2025-11-25 06:51:48,623 | INFO     | errors: (none)
[2025-11-25 01:52:27] 2025-11-25 06:51:48,624 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 01:52:27] 2025-11-25 06:51:48,624 | INFO     | pilot state: finished 
[2025-11-25 01:52:27] 2025-11-25 06:51:48,624 | INFO     | transexitcode: 0
[2025-11-25 01:52:27] 2025-11-25 06:51:48,624 | INFO     | exeerrorcode: 0
[2025-11-25 01:52:27] 2025-11-25 06:51:48,624 | INFO     | exeerrordiag: 
[2025-11-25 01:52:27] 2025-11-25 06:51:48,624 | INFO     | exitcode: 0
[2025-11-25 01:52:27] 2025-11-25 06:51:48,624 | INFO     | exitmsg: OK
[2025-11-25 01:52:27] 2025-11-25 06:51:48,624 | INFO     | cpuconsumptiontime: 223325 s
[2025-11-25 01:52:27] 2025-11-25 06:51:48,624 | INFO     | nevents: 1000
[2025-11-25 01:52:27] 2025-11-25 06:51:48,624 | INFO     | neventsw: 0
[2025-11-25 01:52:27] 2025-11-25 06:51:48,624 | INFO     | pid: 3428648
[2025-11-25 01:52:27] 2025-11-25 06:51:48,624 | INFO     | pgrp: 3428648
[2025-11-25 01:52:27] 2025-11-25 06:51:48,625 | INFO     | corecount: 12
[2025-11-25 01:52:27] 2025-11-25 06:51:48,625 | INFO     | event service: False
[2025-11-25 01:52:27] 2025-11-25 06:51:48,625 | INFO     | sizes: {0: 2298585, 1: 2298784, 8: 2299046, 11: 2299074, 92733: 2367825, 92734: 2367824, 92739: 2377849, 92748: 2378039}
[2025-11-25 01:52:27] 2025-11-25 06:51:48,625 | INFO     | --------------------------------------------------
[2025-11-25 01:52:27] 2025-11-25 06:51:48,625 | INFO     | 
[2025-11-25 01:52:27] 2025-11-25 06:51:48,625 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-25 01:52:27] 2025-11-25 06:51:48,646 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 01:52:27] 2025-11-25 06:51:48,646 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 01:52:27] 2025-11-25 06:51:48,646 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 01:52:27] 2025-11-25 06:51:48,647 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 01:52:27] 2025-11-25 06:51:48,647 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 01:52:27] 2025-11-25 06:51:48,647 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 01:52:27] 2025-11-25 06:51:48,647 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 01:52:27] 2025-11-25 06:51:48,647 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 01:52:27] 2025-11-25 06:51:48,647 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 01:52:27] 2025-11-25 06:51:48,647 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 01:52:27] 2025-11-25 06:51:48,647 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 01:52:27] 2025-11-25 06:51:48,647 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 01:52:27] 2025-11-25 06:51:48,647 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 01:52:27] 2025-11-25 06:51:48,647 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 01:52:27] 2025-11-25 06:51:48,647 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 01:52:27] 2025-11-25 06:51:48,647 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 01:52:27] 2025-11-25 06:51:48,647 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 01:52:27] 2025-11-25 06:51:48,648 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 01:52:27] 2025-11-25 06:51:48,648 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 01:52:27] 2025-11-25 06:51:48,648 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 01:52:27] 2025-11-25 06:51:48,648 | INFO     | job 6895356777 has completed (purged errors)
[2025-11-25 01:52:27] 2025-11-25 06:51:48,648 | INFO     | overall cleanup function is called
[2025-11-25 01:52:27] 2025-11-25 06:51:49,674 | INFO     | --- collectZombieJob: --- 10, [3428648]
[2025-11-25 01:52:27] 2025-11-25 06:51:49,674 | INFO     | zombie collector waiting for pid 3428648
[2025-11-25 01:52:27] 2025-11-25 06:51:49,675 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 01:52:27] 2025-11-25 06:51:49,675 | INFO     | collected zombie processes
[2025-11-25 01:52:27] 2025-11-25 06:51:49,675 | INFO     | will attempt to kill all subprocesses of pid=3428648
[2025-11-25 01:52:27] 2025-11-25 06:51:50,148 | INFO     | process IDs to be killed: [3428648] (in reverse order)
[2025-11-25 01:52:27] 2025-11-25 06:51:50,287 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 01:52:27] 2025-11-25 06:51:50,288 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 01:52:27] 2025-11-25 06:51:50,342 | INFO     | did not find any defunct processes belonging to 3428648
[2025-11-25 01:52:27] 2025-11-25 06:51:50,359 | INFO     | did not find any defunct processes belonging to 3428648
[2025-11-25 01:52:27] 2025-11-25 06:51:50,439 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 01:52:27] 2025-11-25 06:51:50,439 | INFO     | ready for new job
[2025-11-25 01:52:27] 2025-11-25 06:51:50,439 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 01:52:27] 2025-11-25 06:51:50,544 | INFO     | ***************************************
[2025-11-25 01:52:27] 2025-11-25 06:51:50,545 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 01:52:27] 2025-11-25 06:51:50,545 | INFO     | ***************************************
[2025-11-25 01:52:27] 2025-11-25 06:51:50,545 | INFO     | 
[2025-11-25 01:52:27] 2025-11-25 06:51:50,564 | INFO     | architecture information:
[2025-11-25 01:52:27] 2025-11-25 06:51:50,583 | INFO     | executing command: cat /etc/os-release
[2025-11-25 01:52:27] 2025-11-25 06:51:50,620 | INFO     | cat /etc/os-release:
[2025-11-25 01:52:27] NAME="CentOS Linux"
[2025-11-25 01:52:27] VERSION="7 (Core)"
[2025-11-25 01:52:27] ID="centos"
[2025-11-25 01:52:27] ID_LIKE="rhel fedora"
[2025-11-25 01:52:27] VERSION_ID="7"
[2025-11-25 01:52:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 01:52:27] ANSI_COLOR="0;31"
[2025-11-25 01:52:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 01:52:27] HOME_URL="https://www.centos.org/"
[2025-11-25 01:52:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 01:52:27] 
[2025-11-25 01:52:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 01:52:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 01:52:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 01:52:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 01:52:27] 
[2025-11-25 01:52:27] 2025-11-25 06:51:50,621 | INFO     | ***************************************
[2025-11-25 01:52:27] 2025-11-25 06:51:51,124 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-25 01:52:27] 2025-11-25 06:51:51,141 | INFO     | sufficient remaining disk space (121241600000 B)
[2025-11-25 01:52:27] 2025-11-25 06:51:51,142 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 01:52:27] 2025-11-25 06:51:51,142 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 01:52:27] 2025-11-25 06:51:51,142 | INFO     | update_server=False
[2025-11-25 01:52:27] 2025-11-25 06:51:51,142 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 01:52:27] 2025-11-25 06:51:51,142 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:52:27] 2025-11-25 06:51:51,143 | INFO     | aborting loop
[2025-11-25 01:52:27] 2025-11-25 06:51:51,324 | INFO     | all data control threads have been joined
[2025-11-25 01:52:27] 2025-11-25 06:51:52,133 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 01:52:27] 2025-11-25 06:51:52,148 | INFO     | [job] retrieve thread has finished
[2025-11-25 01:52:27] 2025-11-25 06:51:52,152 | INFO     | [job] job monitor thread has finished
[2025-11-25 01:52:27] 2025-11-25 06:51:52,180 | INFO     | [data] copytool_in thread has finished
[2025-11-25 01:52:27] 2025-11-25 06:51:52,264 | INFO     | all payload control threads have been joined
[2025-11-25 01:52:27] 2025-11-25 06:51:52,226 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 01:52:27] 2025-11-25 06:51:52,332 | INFO     | [data] control thread has finished
[2025-11-25 01:52:27] 2025-11-25 06:51:52,418 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 01:52:27] 2025-11-25 06:51:52,525 | INFO     | [payload] failed_post thread has finished
[2025-11-25 01:52:27] 2025-11-25 06:51:52,586 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 01:52:27] 2025-11-25 06:51:52,730 | INFO     | all job control threads have been joined
[2025-11-25 01:52:27] 2025-11-25 06:51:52,751 | INFO     | [payload] validate_post thread has finished
[2025-11-25 01:52:27] 2025-11-25 06:51:52,998 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 01:52:27] 2025-11-25 06:51:53,233 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:52:27] 2025-11-25 06:51:53,260 | INFO     | [job] validate thread has finished
[2025-11-25 01:52:27] 2025-11-25 06:51:53,281 | INFO     | [payload] control thread has finished
[2025-11-25 01:52:27] 2025-11-25 06:51:53,756 | INFO     | [job] control thread has finished
[2025-11-25 01:52:27] 2025-11-25 06:51:54,143 | INFO     | [data] copytool_out thread has finished
[2025-11-25 01:52:27] 2025-11-25 06:51:54,169 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 01:52:27] 2025-11-25 06:51:54,238 | INFO     | [job] queue monitor thread has finished
[2025-11-25 01:52:27] 2025-11-25 06:51:58,188 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 01:52:27] 2025-11-25 06:52:20,069 | INFO     | [monitor] cgroup control has ended
[2025-11-25 01:52:27] 2025-11-25 06:52:21,199 | INFO     | PID=3403082 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 01:52:27] 2025-11-25 06:52:21,200 | INFO     | .. there are 20 such processes running
[2025-11-25 01:52:27] 2025-11-25 06:52:21,201 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 01:52:27] 2025-11-25 06:52:21,201 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 01:52:27] 2025-11-25 06:52:21,201 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 01:52:27] 2025-11-25 06:52:21,320 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139679570806592)>', '<ExcThread(monitor, started 139679206713088)>']
[2025-11-25 01:52:27] 2025-11-25 06:52:22,207 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 01:52:27] 2025-11-25 06:52:22,207 | INFO     | [monitor] control thread has ended
[2025-11-25 01:52:27] 2025-11-25 06:52:26,406 | INFO     | all workflow threads have been joined
[2025-11-25 01:52:27] 2025-11-25 06:52:26,410 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 01:52:27] 2025-11-25 06:52:26,411 | INFO     | traces error code: 0
[2025-11-25 01:52:27] 2025-11-25 06:52:26,411 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 01:52:27] 2025-11-25 06:52:27,071 [wrapper] ==== pilot stdout END ====
[2025-11-25 01:52:27] 2025-11-25 06:52:27,074 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 01:52:27] 2025-11-25 06:52:27,076 [wrapper] pilotpid: 3403082
[2025-11-25 01:52:27] 2025-11-25 06:52:27,079 [wrapper] Pilot exit status: 0
[2025-11-25 01:52:27] 2025-11-25 06:52:27,089 [wrapper] pandaids: 6895356777
[2025-11-25 01:52:27] 2025-11-25 06:52:27,181 [wrapper] cleanup supervisor_pilot 2576792 3403083
[2025-11-25 01:52:27] 2025-11-25 06:52:27,185 [wrapper] Test setup, not cleaning
[2025-11-25 01:52:27] 2025-11-25 06:52:27,196 [wrapper] apfmon messages muted
[2025-11-25 01:52:27] 2025-11-25 06:52:27,199 [wrapper] ==== wrapper stdout END ====
[2025-11-25 01:52:27] 2025-11-25 06:52:27,201 [wrapper] ==== wrapper stderr END ====
[2025-11-25 01:52:27]  *** Error codes and diagnostics ***
[2025-11-25 01:52:27]     "exeErrorCode": 0,
[2025-11-25 01:52:27]     "exeErrorDiag": "",
[2025-11-25 01:52:27]     "pilotErrorCode": 0,
[2025-11-25 01:52:27]     "pilotErrorDiag": "",
[2025-11-25 01:52:27]  *** Listing of results directory ***
[2025-11-25 01:52:27] total 1343828
[2025-11-25 01:52:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 06:12 pilot3.tar.gz
[2025-11-25 01:52:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 06:18 queuedata.json
[2025-11-25 01:52:27] -rwx------. 1 boincer umatlas     36292 Nov 23 06:19 runpilot2-wrapper.sh
[2025-11-25 01:52:27] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 01:52:27] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:05 run_atlas
[2025-11-25 01:52:27] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:05 job.xml
[2025-11-25 01:52:27] -rw-r--r--. 2 boincer umatlas 408692662 Nov 24 00:05 EVNT.47483658._001156.pool.root.1
[2025-11-25 01:52:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:05 start_atlas.sh
[2025-11-25 01:52:27] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:05 shared
[2025-11-25 01:52:27] -rw-r--r--. 2 boincer umatlas    590104 Nov 24 00:05 input.tar.gz
[2025-11-25 01:52:27] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:05 boinc_lockfile
[2025-11-25 01:52:27] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 00:05 pandaJob.out
[2025-11-25 01:52:27] -rw-------. 1 boincer umatlas        57 Nov 24 00:05 setup.sh.local
[2025-11-25 01:52:27] -rw-------. 1 boincer umatlas    989786 Nov 24 00:05 agis_schedconf.cvmfs.json
[2025-11-25 01:52:27] drwx------. 5 boincer umatlas      4096 Nov 24 00:05 pilot3
[2025-11-25 01:52:27] -rw-r--r--. 1 boincer umatlas       533 Nov 25 00:39 boinc_task_state.xml
[2025-11-25 01:52:27] -rw-------. 1 boincer umatlas 932663118 Nov 25 01:46 HITS.47556149._001423.pool.root.1
[2025-11-25 01:52:27] -rw-r--r--. 1 boincer umatlas      6949 Nov 25 01:48 init_data.xml
[2025-11-25 01:52:27] -rw-------. 1 boincer umatlas      1077 Nov 25 01:51 memory_monitor_summary.json
[2025-11-25 01:52:27] -rw-------. 1 boincer umatlas   1516227 Nov 25 01:51 agis_ddmendpoints.agis.ALL.json
[2025-11-25 01:52:27] -rw-------. 1 boincer umatlas   3036638 Nov 25 01:51 log.47556149._001423.job.log.tgz.1
[2025-11-25 01:52:27] -rw-------. 1 boincer umatlas      8649 Nov 25 01:51 heartbeat.json
[2025-11-25 01:52:27] -rw-------. 1 boincer umatlas        95 Nov 25 01:52 pilot_heartbeat.json
[2025-11-25 01:52:27] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 01:52 boinc_mmap_file
[2025-11-25 01:52:27] -rw-r--r--. 1 boincer umatlas        29 Nov 25 01:52 wrapper_checkpoint.txt
[2025-11-25 01:52:27] -rw-------. 1 boincer umatlas      4825 Nov 25 01:52 pilotlog.txt
[2025-11-25 01:52:27] -rw-------. 1 boincer umatlas  12366638 Nov 25 01:52 log.47556149._001423.job.log.1
[2025-11-25 01:52:27] -rw-------. 1 boincer umatlas       353 Nov 25 01:52 output.list
[2025-11-25 01:52:27] -rw-r--r--. 1 boincer umatlas       620 Nov 25 01:52 runtime_log
[2025-11-25 01:52:27] -rw-------. 1 boincer umatlas  15421440 Nov 25 01:52 result.tar.gz
[2025-11-25 01:52:27] -rw-r--r--. 1 boincer umatlas      9345 Nov 25 01:52 runtime_log.err
[2025-11-25 01:52:27] -rw-------. 1 boincer umatlas       668 Nov 25 01:52 gIYLDm4INh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfpKKDmE4epmn.diag
[2025-11-25 01:52:27] -rw-r--r--. 1 boincer umatlas     21864 Nov 25 01:52 stderr.txt
[2025-11-25 01:52:27] HITS file was successfully produced:
[2025-11-25 01:52:27] -rw-------. 1 boincer umatlas 932663118 Nov 25 01:46 shared/HITS.pool.root.1
[2025-11-25 01:52:27]  *** Contents of shared directory: ***
[2025-11-25 01:52:27] total 1325584
[2025-11-25 01:52:27] -rw-r--r--. 2 boincer umatlas 408692662 Nov 24 00:05 ATLAS.root_0
[2025-11-25 01:52:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:05 start_atlas.sh
[2025-11-25 01:52:27] -rw-r--r--. 2 boincer umatlas    590104 Nov 24 00:05 input.tar.gz
[2025-11-25 01:52:27] -rw-------. 1 boincer umatlas 932663118 Nov 25 01:46 HITS.pool.root.1
[2025-11-25 01:52:27] -rw-------. 1 boincer umatlas  15421440 Nov 25 01:52 result.tar.gz
01:52:49 (3396884): run_atlas exited; CPU time 222898.798125
01:52:49 (3396884): called boinc_finish(0)

</stderr_txt>
]]>

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