Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:07:03 (2749517): wrapper (7.7.26015): starting
00:07:03 (2749517): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 00:07:03] Arguments: --nthreads 8
[2025-11-24 00:07:03] Threads: 8
[2025-11-24 00:07:03] Checking for CVMFS
[2025-11-24 00:07:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:07:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:07:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:07:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:07:06] 2.13.2.0 3557600 19526 126192 153234 1 244 24667568 40960001 31356 16776704 0 191249441 99.712 146824309 49265 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:07:06] CVMFS is ok
[2025-11-24 00:07:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:07:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:07:06] Further information can be found at the LHC@home message board.
[2025-11-24 00:07:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:07:06] Checking for apptainer binary...
[2025-11-24 00:07:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:07:06] Running /usr/bin/apptainer --version
[2025-11-24 00:07:06] apptainer version 1.4.4-1.el9
[2025-11-24 00:07:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:07:06] c-208-40.aglt2.org
[2025-11-24 00:07:06] apptainer works
[2025-11-24 00:07:06] Set ATHENA_PROC_NUMBER=8
[2025-11-24 00:07:06] Set ATHENA_CORE_NUMBER=8
[2025-11-24 00:07:07] Starting ATLAS job with PandaID=6895335194
[2025-11-24 00:07:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:00:11 (2749517): BOINC client no longer exists - exiting
13:00:11 (2749517): timer handler: client dead, exiting
13:38:33 (3755122): wrapper (7.7.26015): starting
13:38:33 (3755122): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 13:38:33] Arguments: --nthreads 8
[2025-11-24 13:38:33] Threads: 8
[2025-11-24 13:38:33] This job has been restarted, cleaning up previous attempt
[2025-11-24 13:38:33] Checking for CVMFS
[2025-11-24 13:38:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 13:38:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 13:38:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 13:38:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 13:38:36] 2.13.2.0 3557600 20338 158228 153255 3 272 21203840 40960000 34680 16776704 0 198211802 99.706 156632992 49441 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 13:38:36] CVMFS is ok
[2025-11-24 13:38:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 13:38:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 13:38:36] Further information can be found at the LHC@home message board.
[2025-11-24 13:38:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 13:38:36] Checking for apptainer binary...
[2025-11-24 13:38:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 13:38:36] Running /usr/bin/apptainer --version
[2025-11-24 13:38:36] apptainer version 1.4.4-1.el9
[2025-11-24 13:38:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 13:38:37] c-208-40.aglt2.org
[2025-11-24 13:38:37] apptainer works
[2025-11-24 13:38:37] Set ATHENA_PROC_NUMBER=8
[2025-11-24 13:38:37] Set ATHENA_CORE_NUMBER=8
[2025-11-24 13:38:37] Starting ATLAS job with PandaID=6895335194
[2025-11-24 13:38:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:20:10 (3755122): BOINC client no longer exists - exiting
14:20:10 (3755122): timer handler: client dead, exiting
14:20:59 (4108143): wrapper (7.7.26015): starting
14:20:59 (4108143): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 14:20:59] Arguments: --nthreads 8
[2025-11-24 14:20:59] Threads: 8
[2025-11-24 14:20:59] This job has been restarted, cleaning up previous attempt
[2025-11-24 14:20:59] Checking for CVMFS
[2025-11-24 14:20:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 14:20:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 14:20:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 14:20:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 14:20:59] 2.13.2.0 3557600 20380 165040 153257 1 401 21938872 40960000 29623 16776704 0 198657297 99.706 156863013 49330 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 14:20:59] CVMFS is ok
[2025-11-24 14:20:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 14:20:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 14:20:59] Further information can be found at the LHC@home message board.
[2025-11-24 14:20:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 14:20:59] Checking for apptainer binary...
[2025-11-24 14:20:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 14:20:59] Running /usr/bin/apptainer --version
[2025-11-24 14:20:59] apptainer version 1.4.4-1.el9
[2025-11-24 14:20:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 14:20:59] c-208-40.aglt2.org
[2025-11-24 14:20:59] apptainer works
[2025-11-24 14:20:59] Set ATHENA_PROC_NUMBER=8
[2025-11-24 14:20:59] Set ATHENA_CORE_NUMBER=8
[2025-11-24 14:20:59] Starting ATLAS job with PandaID=6895335194
[2025-11-24 14:20:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 03:05:39]  *** The last 200 lines of the pilot log: ***
[2025-11-25 03:05:39] 2025-11-25 08:04:34,579 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:05:39] 2025-11-25 08:04:35,595 | INFO     | PID=4141844 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 03:05:39] 2025-11-25 08:04:35,595 | INFO     | .. there are 44 such processes running
[2025-11-25 03:05:39] 2025-11-25 08:04:36,596 | INFO     | time since job start (45807s) is within the limit (172800.0s)
[2025-11-25 03:05:39] 2025-11-25 08:04:37,087 | INFO     | monitor loop #2760: job 0:6895335194 is in state 'finished'
[2025-11-25 03:05:39] 2025-11-25 08:04:37,087 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:05:39] 2025-11-25 08:04:38,603 | INFO     | time since job start (45809s) is within the limit (172800.0s)
[2025-11-25 03:05:39] 2025-11-25 08:04:39,592 | INFO     | monitor loop #2761: job 0:6895335194 is in state 'finished'
[2025-11-25 03:05:39] 2025-11-25 08:04:39,592 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:05:39] 2025-11-25 08:04:40,618 | INFO     | time since job start (45811s) is within the limit (172800.0s)
[2025-11-25 03:05:39] 2025-11-25 08:04:40,618 | INFO     | 45811s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 03:05:39] 2025-11-25 08:04:42,100 | INFO     | monitor loop #2762: job 0:6895335194 is in state 'finished'
[2025-11-25 03:05:39] 2025-11-25 08:04:42,100 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:05:39] 2025-11-25 08:04:42,625 | INFO     | time since job start (45813s) is within the limit (172800.0s)
[2025-11-25 03:05:39] 2025-11-25 08:04:44,610 | INFO     | monitor loop #2763: job 0:6895335194 is in state 'finished'
[2025-11-25 03:05:39] 2025-11-25 08:04:44,610 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:05:39] 2025-11-25 08:04:44,631 | INFO     | time since job start (45815s) is within the limit (172800.0s)
[2025-11-25 03:05:39] 2025-11-25 08:04:45,185 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 03:05:39] 2025-11-25 08:04:45,193 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.986585937501
[2025-11-25 03:05:39] 2025-11-25 08:04:45,218 | INFO     | using path: /tmp/boinchome/slots/14/PanDA_Pilot-6895335194/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 03:05:39] 2025-11-25 08:04:45,218 | INFO     | extracted standard info from prmon json
[2025-11-25 03:05:39] 2025-11-25 08:04:45,218 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 03:05:39] 2025-11-25 08:04:45,218 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 03:05:39] 2025-11-25 08:04:45,233 | INFO     | fitting pss+swap vs Time
[2025-11-25 03:05:39] 2025-11-25 08:04:45,234 | INFO     | sum of square deviations: 130820550261.4185
[2025-11-25 03:05:39] 2025-11-25 08:04:45,248 | INFO     | sum of deviations: 3549581517628.17
[2025-11-25 03:05:39] 2025-11-25 08:04:45,248 | INFO     | mean x: 1764034944.2746665
[2025-11-25 03:05:39] 2025-11-25 08:04:45,248 | INFO     | mean y: 3414036.7613333333
[2025-11-25 03:05:39] 2025-11-25 08:04:45,248 | INFO     | intersect: -47860517296.16058
[2025-11-25 03:05:39] 2025-11-25 08:04:45,249 | INFO     | chi2: 29.824906012360362
[2025-11-25 03:05:39] 2025-11-25 08:04:45,249 | INFO     | sum of square deviations: 128222033053.06572
[2025-11-25 03:05:39] 2025-11-25 08:04:45,267 | INFO     | sum of deviations: 3861983084529.2207
[2025-11-25 03:05:39] 2025-11-25 08:04:45,267 | INFO     | mean x: 1764034791.7865772
[2025-11-25 03:05:39] 2025-11-25 08:04:45,267 | INFO     | mean y: 3432365.322147651
[2025-11-25 03:05:39] 2025-11-25 08:04:45,267 | INFO     | intersect: -53128407492.3512
[2025-11-25 03:05:39] 2025-11-25 08:04:45,268 | INFO     | chi2: 25.27390232760339
[2025-11-25 03:05:39] 2025-11-25 08:04:45,268 | INFO     | current chi2=25.27390232760339 (change=15.2590713374617 %)
[2025-11-25 03:05:39] 2025-11-25 08:04:45,268 | INFO     | right removable region: 744
[2025-11-25 03:05:39] 2025-11-25 08:04:45,268 | INFO     | sum of square deviations: 128221449045.8983
[2025-11-25 03:05:39] 2025-11-25 08:04:45,279 | INFO     | sum of deviations: 3332275299038.952
[2025-11-25 03:05:39] 2025-11-25 08:04:45,279 | INFO     | mean x: 1764035096.7798657
[2025-11-25 03:05:39] 2025-11-25 08:04:45,279 | INFO     | mean y: 3426765.5302013424
[2025-11-25 03:05:39] 2025-11-25 08:04:45,279 | INFO     | intersect: -45841091631.17851
[2025-11-25 03:05:39] 2025-11-25 08:04:45,280 | INFO     | chi2: 28.398680765183606
[2025-11-25 03:05:39] 2025-11-25 08:04:45,280 | INFO     | current chi2=28.398680765183606 (change=4.781994104476588 %)
[2025-11-25 03:05:39] 2025-11-25 08:04:45,280 | INFO     | left removable region: 10
[2025-11-25 03:05:39] 2025-11-25 08:04:45,280 | INFO     | sum of square deviations: 122625906792.84604
[2025-11-25 03:05:39] 2025-11-25 08:04:45,299 | INFO     | sum of deviations: 3595464687339.3306
[2025-11-25 03:05:39] 2025-11-25 08:04:45,299 | INFO     | mean x: 1764035066.2956402
[2025-11-25 03:05:39] 2025-11-25 08:04:45,299 | INFO     | mean y: 3456024.0722070844
[2025-11-25 03:05:39] 2025-11-25 08:04:45,299 | INFO     | intersect: -51719103702.30602
[2025-11-25 03:05:39] 2025-11-25 08:04:45,299 | INFO     | chi2: 22.844333352864364
[2025-11-25 03:05:39] 2025-11-25 08:04:45,299 | INFO     | current memory leak: 29.32 B/s (using 734 data points, chi2=22.84)
[2025-11-25 03:05:39] 2025-11-25 08:04:45,300 | INFO     | could have reported an average CPU frequency of 3799 MHz (28 samples)
[2025-11-25 03:05:39] 2025-11-25 08:04:45,300 | INFO     | ..............................
[2025-11-25 03:05:39] 2025-11-25 08:04:45,300 | INFO     | . Timing measurements:
[2025-11-25 03:05:39] 2025-11-25 08:04:45,300 | INFO     | . get job = 0 s
[2025-11-25 03:05:39] 2025-11-25 08:04:45,300 | INFO     | . initial setup = 0 s
[2025-11-25 03:05:39] 2025-11-25 08:04:45,300 | INFO     | . payload setup = 6 s
[2025-11-25 03:05:39] 2025-11-25 08:04:45,300 | INFO     | . stage-in = 0 s
[2025-11-25 03:05:39] 2025-11-25 08:04:45,300 | INFO     | . payload execution = 45739 s
[2025-11-25 03:05:39] 2025-11-25 08:04:45,300 | INFO     | . stage-out = 7 s
[2025-11-25 03:05:39] 2025-11-25 08:04:45,301 | INFO     | . log creation = 2 s
[2025-11-25 03:05:39] 2025-11-25 08:04:45,301 | INFO     | ..............................
[2025-11-25 03:05:39] 2025-11-25 08:04:45,421 | INFO     | 
[2025-11-25 03:05:39] 2025-11-25 08:04:45,421 | INFO     | job summary report
[2025-11-25 03:05:39] 2025-11-25 08:04:45,421 | INFO     | --------------------------------------------------
[2025-11-25 03:05:39] 2025-11-25 08:04:45,421 | INFO     | PanDA job id: 6895335194
[2025-11-25 03:05:39] 2025-11-25 08:04:45,421 | INFO     | task id: 47556137
[2025-11-25 03:05:39] 2025-11-25 08:04:45,421 | INFO     | errors: (none)
[2025-11-25 03:05:39] 2025-11-25 08:04:45,421 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 03:05:39] 2025-11-25 08:04:45,421 | INFO     | pilot state: finished 
[2025-11-25 03:05:39] 2025-11-25 08:04:45,421 | INFO     | transexitcode: 0
[2025-11-25 03:05:39] 2025-11-25 08:04:45,422 | INFO     | exeerrorcode: 0
[2025-11-25 03:05:39] 2025-11-25 08:04:45,422 | INFO     | exeerrordiag: 
[2025-11-25 03:05:39] 2025-11-25 08:04:45,422 | INFO     | exitcode: 0
[2025-11-25 03:05:39] 2025-11-25 08:04:45,422 | INFO     | exitmsg: OK
[2025-11-25 03:05:39] 2025-11-25 08:04:45,422 | INFO     | cpuconsumptiontime: 139010 s
[2025-11-25 03:05:39] 2025-11-25 08:04:45,422 | INFO     | nevents: 1000
[2025-11-25 03:05:39] 2025-11-25 08:04:45,422 | INFO     | neventsw: 0
[2025-11-25 03:05:39] 2025-11-25 08:04:45,422 | INFO     | pid: 15020
[2025-11-25 03:05:39] 2025-11-25 08:04:45,422 | INFO     | pgrp: 15020
[2025-11-25 03:05:39] 2025-11-25 08:04:45,422 | INFO     | corecount: 8
[2025-11-25 03:05:39] 2025-11-25 08:04:45,422 | INFO     | event service: False
[2025-11-25 03:05:39] 2025-11-25 08:04:45,422 | INFO     | sizes: {0: 2284260, 5: 2284522, 11: 2284578, 45749: 2330845, 45750: 2330844, 45759: 2339896, 45762: 2340080, 45800: 2340326}
[2025-11-25 03:05:39] 2025-11-25 08:04:45,422 | INFO     | --------------------------------------------------
[2025-11-25 03:05:39] 2025-11-25 08:04:45,422 | INFO     | 
[2025-11-25 03:05:39] 2025-11-25 08:04:45,422 | INFO     | executing command: ls -lF /tmp/boinchome/slots/14
[2025-11-25 03:05:39] 2025-11-25 08:04:45,468 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 03:05:39] 2025-11-25 08:04:45,468 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 03:05:39] 2025-11-25 08:04:45,468 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 03:05:39] 2025-11-25 08:04:45,468 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 03:05:39] 2025-11-25 08:04:45,468 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 03:05:39] 2025-11-25 08:04:45,468 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 03:05:39] 2025-11-25 08:04:45,468 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 03:05:39] 2025-11-25 08:04:45,469 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 03:05:39] 2025-11-25 08:04:45,469 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 03:05:39] 2025-11-25 08:04:45,469 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 03:05:39] 2025-11-25 08:04:45,469 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 03:05:39] 2025-11-25 08:04:45,469 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 03:05:39] 2025-11-25 08:04:45,469 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 03:05:39] 2025-11-25 08:04:45,469 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 03:05:39] 2025-11-25 08:04:45,469 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 03:05:39] 2025-11-25 08:04:45,469 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 03:05:39] 2025-11-25 08:04:45,469 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 03:05:39] 2025-11-25 08:04:45,469 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 03:05:39] 2025-11-25 08:04:45,469 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 03:05:39] 2025-11-25 08:04:45,469 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 03:05:39] 2025-11-25 08:04:45,469 | INFO     | job 6895335194 has completed (purged errors)
[2025-11-25 03:05:39] 2025-11-25 08:04:45,469 | INFO     | overall cleanup function is called
[2025-11-25 03:05:39] 2025-11-25 08:04:46,489 | INFO     | --- collectZombieJob: --- 10, [15020]
[2025-11-25 03:05:39] 2025-11-25 08:04:46,489 | INFO     | zombie collector waiting for pid 15020
[2025-11-25 03:05:39] 2025-11-25 08:04:46,489 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 03:05:39] 2025-11-25 08:04:46,489 | INFO     | collected zombie processes
[2025-11-25 03:05:39] 2025-11-25 08:04:46,489 | INFO     | will attempt to kill all subprocesses of pid=15020
[2025-11-25 03:05:39] 2025-11-25 08:04:47,935 | INFO     | process IDs to be killed: [15020] (in reverse order)
[2025-11-25 03:05:39] 2025-11-25 08:04:48,341 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 03:05:39] 2025-11-25 08:04:48,347 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 03:05:39] 2025-11-25 08:04:48,393 | INFO     | did not find any defunct processes belonging to 15020
[2025-11-25 03:05:39] 2025-11-25 08:04:48,446 | INFO     | did not find any defunct processes belonging to 15020
[2025-11-25 03:05:39] 2025-11-25 08:04:48,447 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 03:05:39] 2025-11-25 08:04:48,447 | INFO     | ready for new job
[2025-11-25 03:05:39] 2025-11-25 08:04:48,447 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 03:05:39] 2025-11-25 08:04:48,451 | INFO     | ***************************************
[2025-11-25 03:05:39] 2025-11-25 08:04:48,452 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 03:05:39] 2025-11-25 08:04:48,452 | INFO     | ***************************************
[2025-11-25 03:05:39] 2025-11-25 08:04:48,452 | INFO     | 
[2025-11-25 03:05:39] 2025-11-25 08:04:48,460 | INFO     | architecture information:
[2025-11-25 03:05:39] 2025-11-25 08:04:48,465 | INFO     | executing command: cat /etc/os-release
[2025-11-25 03:05:39] 2025-11-25 08:04:48,513 | INFO     | cat /etc/os-release:
[2025-11-25 03:05:39] NAME="CentOS Linux"
[2025-11-25 03:05:39] VERSION="7 (Core)"
[2025-11-25 03:05:39] ID="centos"
[2025-11-25 03:05:39] ID_LIKE="rhel fedora"
[2025-11-25 03:05:39] VERSION_ID="7"
[2025-11-25 03:05:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 03:05:39] ANSI_COLOR="0;31"
[2025-11-25 03:05:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 03:05:39] HOME_URL="https://www.centos.org/"
[2025-11-25 03:05:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 03:05:39] 
[2025-11-25 03:05:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 03:05:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 03:05:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 03:05:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 03:05:39] 
[2025-11-25 03:05:39] 2025-11-25 08:04:48,513 | INFO     | ***************************************
[2025-11-25 03:05:39] 2025-11-25 08:04:49,016 | INFO     | executing command: df -mP /tmp/boinchome/slots/14
[2025-11-25 03:05:39] 2025-11-25 08:04:49,124 | INFO     | sufficient remaining disk space (163905011712 B)
[2025-11-25 03:05:39] 2025-11-25 08:04:49,124 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 03:05:39] 2025-11-25 08:04:49,125 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 03:05:39] 2025-11-25 08:04:49,129 | INFO     | update_server=False
[2025-11-25 03:05:39] 2025-11-25 08:04:49,129 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 03:05:39] 2025-11-25 08:04:49,129 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 03:05:39] 2025-11-25 08:04:49,129 | INFO     | aborting loop
[2025-11-25 03:05:39] 2025-11-25 08:04:49,267 | INFO     | all payload control threads have been joined
[2025-11-25 03:05:39] 2025-11-25 08:04:49,826 | INFO     | all data control threads have been joined
[2025-11-25 03:05:39] 2025-11-25 08:04:50,046 | INFO     | all job control threads have been joined
[2025-11-25 03:05:39] 2025-11-25 08:04:50,135 | INFO     | [job] retrieve thread has finished
[2025-11-25 03:05:39] 2025-11-25 08:04:50,135 | INFO     | [job] job monitor thread has finished
[2025-11-25 03:05:39] 2025-11-25 08:04:50,302 | INFO     | [payload] control thread has finished
[2025-11-25 03:05:39] 2025-11-25 08:04:50,425 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 03:05:39] 2025-11-25 08:04:50,437 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 03:05:39] 2025-11-25 08:04:50,454 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 03:05:39] 2025-11-25 08:04:50,494 | INFO     | [payload] validate_post thread has finished
[2025-11-25 03:05:39] 2025-11-25 08:04:50,583 | INFO     | [data] copytool_in thread has finished
[2025-11-25 03:05:39] 2025-11-25 08:04:50,632 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 03:05:39] 2025-11-25 08:04:50,644 | INFO     | [payload] failed_post thread has finished
[2025-11-25 03:05:39] 2025-11-25 08:04:50,821 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 03:05:39] 2025-11-25 08:04:50,833 | INFO     | [data] control thread has finished
[2025-11-25 03:05:39] 2025-11-25 08:04:51,053 | INFO     | [job] control thread has finished
[2025-11-25 03:05:39] 2025-11-25 08:04:51,277 | INFO     | [job] validate thread has finished
[2025-11-25 03:05:39] 2025-11-25 08:04:51,292 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 03:05:39] 2025-11-25 08:04:51,433 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 03:05:39] 2025-11-25 08:04:51,460 | INFO     | [job] queue monitor thread has finished
[2025-11-25 03:05:39] 2025-11-25 08:04:52,444 | INFO     | [data] copytool_out thread has finished
[2025-11-25 03:05:39] 2025-11-25 08:04:54,445 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 03:05:39] 2025-11-25 08:05:20,649 | INFO     | PID=4141844 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 03:05:39] 2025-11-25 08:05:20,649 | INFO     | .. there are 43 such processes running
[2025-11-25 03:05:39] 2025-11-25 08:05:20,650 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 03:05:39] 2025-11-25 08:05:20,650 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 03:05:39] 2025-11-25 08:05:20,650 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 03:05:39] 2025-11-25 08:05:30,926 | INFO     | [monitor] cgroup control has ended
[2025-11-25 03:05:39] 2025-11-25 08:05:31,935 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140439476537152)>', '<ExcThread(monitor, started 140438853908224)>']
[2025-11-25 03:05:39] 2025-11-25 08:05:32,751 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 03:05:39] 2025-11-25 08:05:32,751 | INFO     | [monitor] control thread has ended
[2025-11-25 03:05:39] 2025-11-25 08:05:36,964 | INFO     | all workflow threads have been joined
[2025-11-25 03:05:39] 2025-11-25 08:05:36,964 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 03:05:39] 2025-11-25 08:05:36,964 | INFO     | traces error code: 0
[2025-11-25 03:05:39] 2025-11-25 08:05:36,964 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 03:05:39] 2025-11-25 08:05:37,903 [wrapper] ==== pilot stdout END ====
[2025-11-25 03:05:39] 2025-11-25 08:05:37,919 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 03:05:39] 2025-11-25 08:05:37,927 [wrapper] pilotpid: 4141844
[2025-11-25 03:05:39] 2025-11-25 08:05:37,941 [wrapper] Pilot exit status: 0
[2025-11-25 03:05:39] 2025-11-25 08:05:38,044 [wrapper] pandaids: 6895335194 6895335194 6895335194
[2025-11-25 03:05:39] 2025-11-25 08:05:38,462 [wrapper] cleanup supervisor_pilot 1358181 4141845
[2025-11-25 03:05:39] 2025-11-25 08:05:38,473 [wrapper] Test setup, not cleaning
[2025-11-25 03:05:39] 2025-11-25 08:05:38,530 [wrapper] apfmon messages muted
[2025-11-25 03:05:39] 2025-11-25 08:05:38,540 [wrapper] ==== wrapper stdout END ====
[2025-11-25 03:05:39] 2025-11-25 08:05:38,552 [wrapper] ==== wrapper stderr END ====
[2025-11-25 03:05:39]  *** Error codes and diagnostics ***
[2025-11-25 03:05:39]     "exeErrorCode": 0,
[2025-11-25 03:05:39]     "exeErrorDiag": "",
[2025-11-25 03:05:39]     "pilotErrorCode": 0,
[2025-11-25 03:05:39]     "pilotErrorDiag": "",
[2025-11-25 03:05:39]  *** Listing of results directory ***
[2025-11-25 03:05:39] total 1728412
[2025-11-25 03:05:39] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 03:05:39] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 23:34 pilot3.tar.gz
[2025-11-25 03:05:39] -rwx------. 1 boincer umatlas     36292 Nov 21 23:37 runpilot2-wrapper.sh
[2025-11-25 03:05:39] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 23:37 queuedata.json
[2025-11-25 03:05:39] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 03:05:39] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:07 run_atlas
[2025-11-25 03:05:39] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:07 job.xml
[2025-11-25 03:05:39] -rw-r--r--. 3 boincer umatlas 411104548 Nov 24 00:07 EVNT.47483658._000253.pool.root.1
[2025-11-25 03:05:39] -rw-r--r--. 3 boincer umatlas 411104548 Nov 24 00:07 ATLAS.root_0
[2025-11-25 03:05:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:07 start_atlas.sh
[2025-11-25 03:05:39] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:07 shared
[2025-11-25 03:05:39] -rw-r--r--. 2 boincer umatlas    590098 Nov 24 00:07 input.tar.gz
[2025-11-25 03:05:39] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:07 boinc_lockfile
[2025-11-25 03:05:39] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 14:20 pandaJob.out
[2025-11-25 03:05:39] -rw-------. 1 boincer umatlas        57 Nov 24 14:20 setup.sh.local
[2025-11-25 03:05:39] -rw-------. 1 boincer umatlas    991801 Nov 24 14:21 agis_schedconf.cvmfs.json
[2025-11-25 03:05:39] -rw-r--r--. 1 boincer umatlas       533 Nov 25 02:38 boinc_task_state.xml
[2025-11-25 03:05:39] -rw-r--r--. 1 boincer umatlas      7177 Nov 25 03:01 init_data.xml
[2025-11-25 03:05:39] -rw-------. 1 boincer umatlas 928240887 Nov 25 03:02 HITS.47556137._002495.pool.root.1
[2025-11-25 03:05:39] -rw-------. 1 boincer umatlas      1092 Nov 25 03:03 memory_monitor_summary.json
[2025-11-25 03:05:39] -rw-------. 1 boincer umatlas   1516227 Nov 25 03:04 agis_ddmendpoints.agis.ALL.json
[2025-11-25 03:05:39] -rw-------. 1 boincer umatlas   1952054 Nov 25 03:04 log.47556137._002495.job.log.tgz.1
[2025-11-25 03:05:39] -rw-------. 1 boincer umatlas      8644 Nov 25 03:04 heartbeat.json
[2025-11-25 03:05:39] -rw-------. 1 boincer umatlas        97 Nov 25 03:05 pilot_heartbeat.json
[2025-11-25 03:05:39] -rw-------. 1 boincer umatlas      4826 Nov 25 03:05 pilotlog.txt
[2025-11-25 03:05:39] -rw-------. 1 boincer umatlas   5801484 Nov 25 03:05 log.47556137._002495.job.log.1
[2025-11-25 03:05:39] -rw-r--r--. 1 boincer umatlas        29 Nov 25 03:05 wrapper_checkpoint.txt
[2025-11-25 03:05:39] -rw-------. 1 boincer umatlas       353 Nov 25 03:05 output.list
[2025-11-25 03:05:39] -rw-r--r--. 1 boincer umatlas       620 Nov 25 03:05 runtime_log
[2025-11-25 03:05:39] -rw-------. 1 boincer umatlas   7772160 Nov 25 03:05 result.tar.gz
[2025-11-25 03:05:39] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 03:05 boinc_mmap_file
[2025-11-25 03:05:39] -rw-r--r--. 1 boincer umatlas      9446 Nov 25 03:05 runtime_log.err
[2025-11-25 03:05:39] -rw-------. 1 boincer umatlas       916 Nov 25 03:05 gAQLDmBYug8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmswHKDm5JkR5m.diag
[2025-11-25 03:05:39] -rw-r--r--. 1 boincer umatlas     26437 Nov 25 03:05 stderr.txt
[2025-11-25 03:05:39] HITS file was successfully produced:
[2025-11-25 03:05:39] -rw-------. 1 boincer umatlas 928240887 Nov 25 03:02 shared/HITS.pool.root.1
[2025-11-25 03:05:39]  *** Contents of shared directory: ***
[2025-11-25 03:05:39] total 1316156
[2025-11-25 03:05:39] -rw-r--r--. 3 boincer umatlas 411104548 Nov 24 00:07 ATLAS.root_0
[2025-11-25 03:05:39] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:07 start_atlas.sh
[2025-11-25 03:05:39] -rw-r--r--. 2 boincer umatlas    590098 Nov 24 00:07 input.tar.gz
[2025-11-25 03:05:39] -rw-------. 1 boincer umatlas 928240887 Nov 25 03:02 HITS.pool.root.1
[2025-11-25 03:05:39] -rw-------. 1 boincer umatlas   7772160 Nov 25 03:05 result.tar.gz
03:05:40 (4108143): run_atlas exited; CPU time 139425.915301
03:05:40 (4108143): called boinc_finish(0)

</stderr_txt>
]]>

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