Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:14 (962574): wrapper (7.7.26015): starting
00:05:14 (962574): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 00:05:14] Arguments: --nthreads 8
[2025-11-24 00:05:14] Threads: 8
[2025-11-24 00:05:14] Checking for CVMFS
[2025-11-24 00:05:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:05:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:05:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:05:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:05:14] 2.13.2.0 6639 30516 310560 153233 0 208 25842951 40960000 14654 16776704 0 49235122 99.679 40904032 40410 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:05:14] CVMFS is ok
[2025-11-24 00:05:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:05:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:05:14] Further information can be found at the LHC@home message board.
[2025-11-24 00:05:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:05:14] Checking for apptainer binary...
[2025-11-24 00:05:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:05:14] Running /usr/bin/apptainer --version
[2025-11-24 00:05:14] apptainer version 1.4.4-1.el9
[2025-11-24 00:05:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:05:14] c-206-37.aglt2.org
[2025-11-24 00:05:14] apptainer works
[2025-11-24 00:05:14] Set ATHENA_PROC_NUMBER=8
[2025-11-24 00:05:14] Set ATHENA_CORE_NUMBER=8
[2025-11-24 00:05:15] Starting ATLAS job with PandaID=6895356216
[2025-11-24 00:05:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 20:52:34]  *** The last 200 lines of the pilot log: ***
[2025-11-25 20:52:34] 2025-11-26 01:51:48,908 | INFO     | time since job start (161165s) is within the limit (172800.0s)
[2025-11-25 20:52:34] 2025-11-26 01:51:49,987 | INFO     | monitor loop #10718: job 0:6895356216 is in state 'finished'
[2025-11-25 20:52:34] 2025-11-26 01:51:49,987 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:52:34] 2025-11-26 01:51:50,918 | INFO     | time since job start (161167s) is within the limit (172800.0s)
[2025-11-25 20:52:34] 2025-11-26 01:51:52,515 | INFO     | monitor loop #10719: job 0:6895356216 is in state 'finished'
[2025-11-25 20:52:34] 2025-11-26 01:51:52,515 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:52:34] 2025-11-26 01:51:52,572 | INFO     | PID=972609 has CPU usage=13.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 20:52:34] 2025-11-26 01:51:52,572 | INFO     | .. there are 19 such processes running
[2025-11-25 20:52:34] 2025-11-26 01:51:53,573 | INFO     | time since job start (161170s) is within the limit (172800.0s)
[2025-11-25 20:52:34] 2025-11-26 01:51:55,020 | INFO     | monitor loop #10720: job 0:6895356216 is in state 'finished'
[2025-11-25 20:52:34] 2025-11-26 01:51:55,020 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:52:34] 2025-11-26 01:51:55,580 | INFO     | time since job start (161172s) is within the limit (172800.0s)
[2025-11-25 20:52:34] 2025-11-26 01:51:57,524 | INFO     | monitor loop #10721: job 0:6895356216 is in state 'finished'
[2025-11-25 20:52:34] 2025-11-26 01:51:57,524 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:52:34] 2025-11-26 01:51:57,594 | INFO     | time since job start (161174s) is within the limit (172800.0s)
[2025-11-25 20:52:34] 2025-11-26 01:51:57,789 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 20:52:34] 2025-11-26 01:51:57,793 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3262.7348437500013
[2025-11-25 20:52:34] 2025-11-26 01:51:57,882 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895356216/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 20:52:34] 2025-11-26 01:51:57,883 | INFO     | extracted standard info from prmon json
[2025-11-25 20:52:34] 2025-11-26 01:51:57,883 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 20:52:34] 2025-11-26 01:51:57,883 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 20:52:34] 2025-11-26 01:51:57,916 | INFO     | fitting pss+swap vs Time
[2025-11-25 20:52:34] 2025-11-26 01:51:57,919 | INFO     | sum of square deviations: 5711548089050.6875
[2025-11-25 20:52:34] 2025-11-26 01:51:58,184 | INFO     | sum of deviations: 18027203846050.594
[2025-11-25 20:52:34] 2025-11-26 01:51:58,185 | INFO     | mean x: 1764041358.8311245
[2025-11-25 20:52:34] 2025-11-26 01:51:58,185 | INFO     | mean y: 2898418.082165846
[2025-11-25 20:52:34] 2025-11-26 01:51:58,185 | INFO     | intersect: -5564897330.582947
[2025-11-25 20:52:34] 2025-11-26 01:51:58,195 | INFO     | chi2: 16.869011925467596
[2025-11-25 20:52:34] 2025-11-26 01:51:58,197 | INFO     | sum of square deviations: 5679169836790.532
[2025-11-25 20:52:34] 2025-11-26 01:51:58,585 | INFO     | sum of deviations: 18899684250590.305
[2025-11-25 20:52:34] 2025-11-26 01:51:58,586 | INFO     | mean x: 1764041206.3364947
[2025-11-25 20:52:34] 2025-11-26 01:51:58,586 | INFO     | mean y: 2902526.9590288317
[2025-11-25 20:52:34] 2025-11-26 01:51:58,586 | INFO     | intersect: -5867642422.904893
[2025-11-25 20:52:34] 2025-11-26 01:51:58,588 | INFO     | chi2: 13.802128060309972
[2025-11-25 20:52:34] 2025-11-26 01:51:58,588 | INFO     | current chi2=13.802128060309972 (change=18.1805779657282 %)
[2025-11-25 20:52:34] 2025-11-26 01:51:58,588 | INFO     | right removable region: 2635
[2025-11-25 20:52:34] 2025-11-26 01:51:58,590 | INFO     | sum of square deviations: 5679165275820.532
[2025-11-25 20:52:34] 2025-11-26 01:51:58,921 | INFO     | sum of deviations: 17144283002226.242
[2025-11-25 20:52:34] 2025-11-26 01:51:58,922 | INFO     | mean x: 1764041511.3364947
[2025-11-25 20:52:34] 2025-11-26 01:51:58,922 | INFO     | mean y: 2902575.5364188165
[2025-11-25 20:52:34] 2025-11-26 01:51:58,922 | INFO     | intersect: -5322391799.464523
[2025-11-25 20:52:34] 2025-11-26 01:51:58,924 | INFO     | chi2: 14.095742998194382
[2025-11-25 20:52:34] 2025-11-26 01:51:58,924 | INFO     | current chi2=14.095742998194382 (change=16.440019958053007 %)
[2025-11-25 20:52:34] 2025-11-26 01:51:58,924 | INFO     | left removable region: 10
[2025-11-25 20:52:34] 2025-11-26 01:51:58,926 | INFO     | sum of square deviations: 5608359969572.355
[2025-11-25 20:52:34] 2025-11-26 01:51:59,287 | INFO     | sum of deviations: 17514767203014.89
[2025-11-25 20:52:34] 2025-11-26 01:51:59,287 | INFO     | mean x: 1764041480.848
[2025-11-25 20:52:34] 2025-11-26 01:51:59,287 | INFO     | mean y: 2910940.3832380953
[2025-11-25 20:52:34] 2025-11-26 01:51:59,287 | INFO     | intersect: -5506146260.142764
[2025-11-25 20:52:34] 2025-11-26 01:51:59,289 | INFO     | chi2: 8.71830323632198
[2025-11-25 20:52:34] 2025-11-26 01:51:59,289 | INFO     | current memory leak: 3.12 B/s (using 2625 data points, chi2=8.72)
[2025-11-25 20:52:34] 2025-11-26 01:51:59,292 | INFO     | could have reported an average CPU frequency of 3274 MHz (92 samples)
[2025-11-25 20:52:34] 2025-11-26 01:51:59,292 | INFO     | ..............................
[2025-11-25 20:52:34] 2025-11-26 01:51:59,292 | INFO     | . Timing measurements:
[2025-11-25 20:52:34] 2025-11-26 01:51:59,292 | INFO     | . get job = 0 s
[2025-11-25 20:52:34] 2025-11-26 01:51:59,292 | INFO     | . initial setup = 3 s
[2025-11-25 20:52:34] 2025-11-26 01:51:59,292 | INFO     | . payload setup = 22 s
[2025-11-25 20:52:34] 2025-11-26 01:51:59,292 | INFO     | . stage-in = 0 s
[2025-11-25 20:52:34] 2025-11-26 01:51:59,292 | INFO     | . payload execution = 161068 s
[2025-11-25 20:52:34] 2025-11-26 01:51:59,292 | INFO     | . stage-out = 7 s
[2025-11-25 20:52:34] 2025-11-26 01:51:59,292 | INFO     | . log creation = 2 s
[2025-11-25 20:52:34] 2025-11-26 01:51:59,292 | INFO     | ..............................
[2025-11-25 20:52:34] 2025-11-26 01:51:59,714 | INFO     | time since job start (161176s) is within the limit (172800.0s)
[2025-11-25 20:52:34] 2025-11-26 01:52:00,006 | INFO     | 
[2025-11-25 20:52:34] 2025-11-26 01:52:00,006 | INFO     | job summary report
[2025-11-25 20:52:34] 2025-11-26 01:52:00,006 | INFO     | --------------------------------------------------
[2025-11-25 20:52:34] 2025-11-26 01:52:00,007 | INFO     | PanDA job id: 6895356216
[2025-11-25 20:52:34] 2025-11-26 01:52:00,007 | INFO     | task id: 47556137
[2025-11-25 20:52:34] 2025-11-26 01:52:00,007 | INFO     | errors: (none)
[2025-11-25 20:52:34] 2025-11-26 01:52:00,007 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 20:52:34] 2025-11-26 01:52:00,007 | INFO     | pilot state: finished 
[2025-11-25 20:52:34] 2025-11-26 01:52:00,007 | INFO     | transexitcode: 0
[2025-11-25 20:52:34] 2025-11-26 01:52:00,007 | INFO     | exeerrorcode: 0
[2025-11-25 20:52:34] 2025-11-26 01:52:00,007 | INFO     | exeerrordiag: 
[2025-11-25 20:52:34] 2025-11-26 01:52:00,007 | INFO     | exitcode: 0
[2025-11-25 20:52:34] 2025-11-26 01:52:00,007 | INFO     | exitmsg: OK
[2025-11-25 20:52:34] 2025-11-26 01:52:00,007 | INFO     | cpuconsumptiontime: 208262 s
[2025-11-25 20:52:34] 2025-11-26 01:52:00,007 | INFO     | nevents: 1000
[2025-11-25 20:52:34] 2025-11-26 01:52:00,007 | INFO     | neventsw: 0
[2025-11-25 20:52:34] 2025-11-26 01:52:00,007 | INFO     | pid: 1011736
[2025-11-25 20:52:34] 2025-11-26 01:52:00,007 | INFO     | pgrp: 1011736
[2025-11-25 20:52:34] 2025-11-26 01:52:00,007 | INFO     | corecount: 8
[2025-11-25 20:52:34] 2025-11-26 01:52:00,007 | INFO     | event service: False
[2025-11-25 20:52:34] 2025-11-26 01:52:00,008 | INFO     | sizes: {0: 2298806, 11: 2298806, 14: 2299096, 22: 2299124, 161096: 2398755, 161104: 2408545, 161105: 2408729, 161125: 2408975}
[2025-11-25 20:52:34] 2025-11-26 01:52:00,008 | INFO     | --------------------------------------------------
[2025-11-25 20:52:34] 2025-11-26 01:52:00,008 | INFO     | 
[2025-11-25 20:52:34] 2025-11-26 01:52:00,008 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 20:52:34] 2025-11-26 01:52:00,274 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 20:52:34] 2025-11-26 01:52:00,274 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 20:52:34] 2025-11-26 01:52:00,274 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 20:52:34] 2025-11-26 01:52:00,274 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 20:52:34] 2025-11-26 01:52:00,275 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 20:52:34] 2025-11-26 01:52:00,275 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 20:52:34] 2025-11-26 01:52:00,275 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 20:52:34] 2025-11-26 01:52:00,275 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 20:52:34] 2025-11-26 01:52:00,275 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 20:52:34] 2025-11-26 01:52:00,275 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 20:52:34] 2025-11-26 01:52:00,275 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 20:52:34] 2025-11-26 01:52:00,275 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 20:52:34] 2025-11-26 01:52:00,275 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 20:52:34] 2025-11-26 01:52:00,275 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 20:52:34] 2025-11-26 01:52:00,275 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 20:52:34] 2025-11-26 01:52:00,275 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 20:52:34] 2025-11-26 01:52:00,275 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 20:52:34] 2025-11-26 01:52:00,275 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 20:52:34] 2025-11-26 01:52:00,276 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 20:52:34] 2025-11-26 01:52:00,276 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 20:52:34] 2025-11-26 01:52:00,276 | INFO     | job 6895356216 has completed (purged errors)
[2025-11-25 20:52:34] 2025-11-26 01:52:00,276 | INFO     | overall cleanup function is called
[2025-11-25 20:52:34] 2025-11-26 01:52:01,297 | INFO     | --- collectZombieJob: --- 10, [1011736]
[2025-11-25 20:52:34] 2025-11-26 01:52:01,297 | INFO     | zombie collector waiting for pid 1011736
[2025-11-25 20:52:34] 2025-11-26 01:52:01,297 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 20:52:34] 2025-11-26 01:52:01,297 | INFO     | collected zombie processes
[2025-11-25 20:52:34] 2025-11-26 01:52:01,298 | INFO     | will attempt to kill all subprocesses of pid=1011736
[2025-11-25 20:52:34] 2025-11-26 01:52:02,029 | INFO     | process IDs to be killed: [1011736] (in reverse order)
[2025-11-25 20:52:34] 2025-11-26 01:52:02,440 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 20:52:34] 2025-11-26 01:52:02,440 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 20:52:34] 2025-11-26 01:52:02,459 | INFO     | did not find any defunct processes belonging to 1011736
[2025-11-25 20:52:34] 2025-11-26 01:52:02,489 | INFO     | did not find any defunct processes belonging to 1011736
[2025-11-25 20:52:34] 2025-11-26 01:52:02,491 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 20:52:34] 2025-11-26 01:52:02,491 | INFO     | ready for new job
[2025-11-25 20:52:34] 2025-11-26 01:52:02,491 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 20:52:34] 2025-11-26 01:52:02,506 | INFO     | ***************************************
[2025-11-25 20:52:34] 2025-11-26 01:52:02,506 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 20:52:34] 2025-11-26 01:52:02,506 | INFO     | ***************************************
[2025-11-25 20:52:34] 2025-11-26 01:52:02,506 | INFO     | 
[2025-11-25 20:52:34] 2025-11-26 01:52:02,510 | INFO     | architecture information:
[2025-11-25 20:52:34] 2025-11-26 01:52:02,511 | INFO     | executing command: cat /etc/os-release
[2025-11-25 20:52:34] 2025-11-26 01:52:02,599 | INFO     | cat /etc/os-release:
[2025-11-25 20:52:34] NAME="CentOS Linux"
[2025-11-25 20:52:34] VERSION="7 (Core)"
[2025-11-25 20:52:34] ID="centos"
[2025-11-25 20:52:34] ID_LIKE="rhel fedora"
[2025-11-25 20:52:34] VERSION_ID="7"
[2025-11-25 20:52:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 20:52:34] ANSI_COLOR="0;31"
[2025-11-25 20:52:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 20:52:34] HOME_URL="https://www.centos.org/"
[2025-11-25 20:52:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 20:52:34] 
[2025-11-25 20:52:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 20:52:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 20:52:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 20:52:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 20:52:34] 
[2025-11-25 20:52:34] 2025-11-26 01:52:02,600 | INFO     | ***************************************
[2025-11-25 20:52:34] 2025-11-26 01:52:03,103 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 20:52:34] 2025-11-26 01:52:03,326 | INFO     | sufficient remaining disk space (81266737152 B)
[2025-11-25 20:52:34] 2025-11-26 01:52:03,326 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 20:52:34] 2025-11-26 01:52:03,326 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 20:52:34] 2025-11-26 01:52:03,326 | INFO     | update_server=False
[2025-11-25 20:52:34] 2025-11-26 01:52:03,327 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 20:52:34] 2025-11-26 01:52:03,328 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 20:52:34] 2025-11-26 01:52:03,596 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:52:34] 2025-11-26 01:52:03,596 | INFO     | aborting loop
[2025-11-25 20:52:34] 2025-11-26 01:52:03,920 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 20:52:34] 2025-11-26 01:52:04,059 | INFO     | all job control threads have been joined
[2025-11-25 20:52:34] 2025-11-26 01:52:04,129 | INFO     | all data control threads have been joined
[2025-11-25 20:52:34] 2025-11-26 01:52:04,332 | INFO     | [job] retrieve thread has finished
[2025-11-25 20:52:34] 2025-11-26 01:52:04,602 | INFO     | [job] job monitor thread has finished
[2025-11-25 20:52:34] 2025-11-26 01:52:04,612 | INFO     | [job] validate thread has finished
[2025-11-25 20:52:34] 2025-11-26 01:52:04,649 | INFO     | [payload] failed_post thread has finished
[2025-11-25 20:52:34] 2025-11-26 01:52:04,685 | INFO     | all payload control threads have been joined
[2025-11-25 20:52:34] 2025-11-26 01:52:04,739 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 20:52:34] 2025-11-26 01:52:04,781 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:52:34] 2025-11-26 01:52:05,065 | INFO     | [job] control thread has finished
[2025-11-25 20:52:34] 2025-11-26 01:52:05,136 | INFO     | [data] control thread has finished
[2025-11-25 20:52:34] 2025-11-26 01:52:05,279 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 20:52:34] 2025-11-26 01:52:05,311 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 20:52:34] 2025-11-26 01:52:05,337 | INFO     | [data] copytool_out thread has finished
[2025-11-25 20:52:34] 2025-11-26 01:52:05,675 | INFO     | [data] copytool_in thread has finished
[2025-11-25 20:52:34] 2025-11-26 01:52:05,679 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 20:52:34] 2025-11-26 01:52:05,691 | INFO     | [payload] control thread has finished
[2025-11-25 20:52:34] 2025-11-26 01:52:05,787 | INFO     | [job] queue monitor thread has finished
[2025-11-25 20:52:34] 2025-11-26 01:52:05,887 | INFO     | [payload] validate_post thread has finished
[2025-11-25 20:52:34] 2025-11-26 01:52:07,951 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 20:52:34] 2025-11-26 01:52:25,775 | INFO     | [monitor] cgroup control has ended
[2025-11-25 20:52:34] 2025-11-26 01:52:25,885 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140636719413056)>', '<ExcThread(monitor, started 140636447545088)>']
[2025-11-25 20:52:34] 2025-11-26 01:52:30,912 | INFO     | all workflow threads have been joined
[2025-11-25 20:52:34] 2025-11-26 01:52:30,912 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 20:52:34] 2025-11-26 01:52:30,913 | INFO     | traces error code: 0
[2025-11-25 20:52:34] 2025-11-26 01:52:30,913 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 20:52:34] 2025-11-26 01:52:33,574 | INFO     | PID=972609 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 20:52:34] 2025-11-26 01:52:33,575 | INFO     | .. there are 19 such processes running
[2025-11-25 20:52:34] 2025-11-26 01:52:33,579 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 20:52:34] 2025-11-26 01:52:33,579 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 20:52:34] 2025-11-26 01:52:33,579 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 20:52:34] 2025-11-26 01:52:33,579 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 20:52:34] 2025-11-26 01:52:33,579 | CRITICAL | thread 'MainThread' is not alive
[2025-11-25 20:52:34] 2025-11-26 01:52:33,579 | INFO     | [monitor] control thread has ended
[2025-11-25 20:52:34] 2025-11-26 01:52:33,888 [wrapper] ==== pilot stdout END ====
[2025-11-25 20:52:34] 2025-11-26 01:52:33,933 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 20:52:34] 2025-11-26 01:52:33,981 [wrapper] pilotpid: 972609
[2025-11-25 20:52:34] 2025-11-26 01:52:34,013 [wrapper] Pilot exit status: 0
[2025-11-25 20:52:34] 2025-11-26 01:52:34,057 [wrapper] pandaids: 6895356216
[2025-11-25 20:52:34] 2025-11-26 01:52:34,162 [wrapper] cleanup supervisor_pilot 3400562 972610
[2025-11-25 20:52:34] 2025-11-26 01:52:34,191 [wrapper] Test setup, not cleaning
[2025-11-25 20:52:34] 2025-11-26 01:52:34,193 [wrapper] apfmon messages muted
[2025-11-25 20:52:34] 2025-11-26 01:52:34,199 [wrapper] ==== wrapper stdout END ====
[2025-11-25 20:52:34] 2025-11-26 01:52:34,201 [wrapper] ==== wrapper stderr END ====
[2025-11-25 20:52:34]  *** Error codes and diagnostics ***
[2025-11-25 20:52:34]     "exeErrorCode": 0,
[2025-11-25 20:52:34]     "exeErrorDiag": "",
[2025-11-25 20:52:34]     "pilotErrorCode": 0,
[2025-11-25 20:52:34]     "pilotErrorDiag": "",
[2025-11-25 20:52:34]  *** Listing of results directory ***
[2025-11-25 20:52:34] total 1367008
[2025-11-25 20:52:34] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 05:16 pilot3.tar.gz
[2025-11-25 20:52:34] -rwx------. 1 boincer umatlas     36292 Nov 23 05:42 runpilot2-wrapper.sh
[2025-11-25 20:52:34] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 05:42 queuedata.json
[2025-11-25 20:52:34] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 20:52:34] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:05 run_atlas
[2025-11-25 20:52:34] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:05 job.xml
[2025-11-25 20:52:34] -rw-r--r--. 2 boincer umatlas 410911970 Nov 24 00:05 EVNT.47483658._000692.pool.root.1
[2025-11-25 20:52:34] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:05 start_atlas.sh
[2025-11-25 20:52:34] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:05 shared
[2025-11-25 20:52:34] -rw-r--r--. 2 boincer umatlas    590097 Nov 24 00:05 input.tar.gz
[2025-11-25 20:52:34] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:05 boinc_lockfile
[2025-11-25 20:52:34] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 00:05 pandaJob.out
[2025-11-25 20:52:34] -rw-------. 1 boincer umatlas        57 Nov 24 00:05 setup.sh.local
[2025-11-25 20:52:34] -rw-------. 1 boincer umatlas    989786 Nov 24 00:05 agis_schedconf.cvmfs.json
[2025-11-25 20:52:34] drwx------. 5 boincer umatlas      4096 Nov 24 00:05 pilot3
[2025-11-25 20:52:34] -rw-r--r--. 1 boincer umatlas       533 Nov 25 20:32 boinc_task_state.xml
[2025-11-25 20:52:34] -rw-r--r--. 1 boincer umatlas      6902 Nov 25 20:46 init_data.xml
[2025-11-25 20:52:34] -rw-------. 1 boincer umatlas 934956958 Nov 25 20:50 HITS.47556137._006877.pool.root.1
[2025-11-25 20:52:34] -rw-------. 1 boincer umatlas      1061 Nov 25 20:51 memory_monitor_summary.json
[2025-11-25 20:52:34] -rw-------. 1 boincer umatlas   1516240 Nov 25 20:51 agis_ddmendpoints.agis.ALL.json
[2025-11-25 20:52:34] -rw-------. 1 boincer umatlas   3425556 Nov 25 20:51 log.47556137._006877.job.log.tgz.1
[2025-11-25 20:52:34] -rw-------. 1 boincer umatlas      8605 Nov 25 20:51 heartbeat.json
[2025-11-25 20:52:34] -rw-r--r--. 1 boincer umatlas        29 Nov 25 20:52 wrapper_checkpoint.txt
[2025-11-25 20:52:34] -rw-------. 1 boincer umatlas        95 Nov 25 20:52 pilot_heartbeat.json
[2025-11-25 20:52:34] -rw-------. 1 boincer umatlas       892 Nov 25 20:52 pilotlog.txt
[2025-11-25 20:52:34] -rw-------. 1 boincer umatlas  21586769 Nov 25 20:52 log.47556137._006877.job.log.1
[2025-11-25 20:52:34] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 20:52 boinc_mmap_file
[2025-11-25 20:52:34] -rw-------. 1 boincer umatlas       353 Nov 25 20:52 output.list
[2025-11-25 20:52:34] -rw-r--r--. 1 boincer umatlas       620 Nov 25 20:52 runtime_log
[2025-11-25 20:52:34] -rw-------. 1 boincer umatlas  25036800 Nov 25 20:52 result.tar.gz
[2025-11-25 20:52:34] -rw-r--r--. 1 boincer umatlas      9344 Nov 25 20:52 runtime_log.err
[2025-11-25 20:52:34] -rw-------. 1 boincer umatlas       669 Nov 25 20:52 9RxNDm3iMh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOVIKDm2ss4Ho.diag
[2025-11-25 20:52:34] -rw-r--r--. 1 boincer umatlas     21757 Nov 25 20:52 stderr.txt
[2025-11-25 20:52:34] HITS file was successfully produced:
[2025-11-25 20:52:34] -rw-------. 1 boincer umatlas 934956958 Nov 25 20:50 shared/HITS.pool.root.1
[2025-11-25 20:52:34]  *** Contents of shared directory: ***
[2025-11-25 20:52:34] total 1339384
[2025-11-25 20:52:34] -rw-r--r--. 2 boincer umatlas 410911970 Nov 24 00:05 ATLAS.root_0
[2025-11-25 20:52:34] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:05 start_atlas.sh
[2025-11-25 20:52:34] -rw-r--r--. 2 boincer umatlas    590097 Nov 24 00:05 input.tar.gz
[2025-11-25 20:52:34] -rw-------. 1 boincer umatlas 934956958 Nov 25 20:50 HITS.pool.root.1
[2025-11-25 20:52:34] -rw-------. 1 boincer umatlas  25036800 Nov 25 20:52 result.tar.gz
20:52:36 (962574): run_atlas exited; CPU time 209037.988451
20:52:36 (962574): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN