Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:06 (595508): wrapper (7.7.26015): starting
00:04:06 (595508): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:04:06] Arguments: --nthreads 9
[2025-11-24 00:04:06] Threads: 9
[2025-11-24 00:04:06] Checking for CVMFS
[2025-11-24 00:04:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:04:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:04:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:04:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:04:08] 2.13.2.0 3240580 25549 176868 153233 3 320 25746791 40960001 10527 16776704 0 30510076 99.738 17724329 37853 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:04:08] CVMFS is ok
[2025-11-24 00:04:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:04:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:04:08] Further information can be found at the LHC@home message board.
[2025-11-24 00:04:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:04:08] Checking for apptainer binary...
[2025-11-24 00:04:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:04:08] Running /usr/bin/apptainer --version
[2025-11-24 00:04:08] apptainer version 1.4.4-1.el9
[2025-11-24 00:04:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:04:09] c-210-37-4.aglt2.org
[2025-11-24 00:04:09] apptainer works
[2025-11-24 00:04:09] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:04:09] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:04:09] Starting ATLAS job with PandaID=6894053140
[2025-11-24 00:04:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 22:00:20]  *** The last 200 lines of the pilot log: ***
[2025-11-24 22:00:20] 2025-11-24 18:02:43,661 | INFO     | fitting pss+swap vs Time
[2025-11-24 22:00:20] 2025-11-24 18:02:43,663 | INFO     | sum of square deviations: 138274721822.70523
[2025-11-24 22:00:20] 2025-11-24 18:02:43,751 | INFO     | sum of deviations: 71373822652.63776
[2025-11-24 22:00:20] 2025-11-24 18:02:43,751 | INFO     | mean x: 1763984020.5196335
[2025-11-24 22:00:20] 2025-11-24 18:02:43,751 | INFO     | mean y: 2583926.9908376965
[2025-11-24 22:00:20] 2025-11-24 18:02:43,752 | INFO     | intersect: -907938842.3414063
[2025-11-24 22:00:20] 2025-11-24 18:02:43,786 | INFO     | chi2: 13.59478757958657
[2025-11-24 22:00:20] 2025-11-24 18:02:43,788 | INFO     | sum of square deviations: 135577773957.47322
[2025-11-24 22:00:20] 2025-11-24 18:02:43,928 | INFO     | sum of deviations: 321005475009.26056
[2025-11-24 22:00:20] 2025-11-24 18:02:43,929 | INFO     | mean x: 1763983868.0263505
[2025-11-24 22:00:20] 2025-11-24 18:02:43,929 | INFO     | mean y: 2598042.086956522
[2025-11-24 22:00:20] 2025-11-24 18:02:43,929 | INFO     | intersect: -4173960275.2231283
[2025-11-24 22:00:20] 2025-11-24 18:02:43,933 | INFO     | chi2: 9.892685736761242
[2025-11-24 22:00:20] 2025-11-24 18:02:43,933 | INFO     | current chi2=9.892685736761242 (change=27.231774098363008 %)
[2025-11-24 22:00:20] 2025-11-24 18:02:43,934 | INFO     | sum of square deviations: 132916129079.67058
[2025-11-24 22:00:20] 2025-11-24 18:02:43,955 | INFO     | sum of deviations: 570898742023.5883
[2025-11-24 22:00:20] 2025-11-24 18:02:43,955 | INFO     | mean x: 1763983715.5331564
[2025-11-24 22:00:20] 2025-11-24 18:02:43,955 | INFO     | mean y: 2612359.416445623
[2025-11-24 22:00:20] 2025-11-24 18:02:43,955 | INFO     | intersect: -7574015782.863712
[2025-11-24 22:00:20] 2025-11-24 18:02:43,956 | INFO     | chi2: 6.2984773115250245
[2025-11-24 22:00:20] 2025-11-24 18:02:43,956 | INFO     | current chi2=6.2984773115250245 (change=36.331978199611974 %)
[2025-11-24 22:00:20] 2025-11-24 18:02:43,957 | INFO     | sum of square deviations: 130289508877.87648
[2025-11-24 22:00:20] 2025-11-24 18:02:43,970 | INFO     | sum of deviations: 716367026104.7177
[2025-11-24 22:00:20] 2025-11-24 18:02:43,971 | INFO     | mean x: 1763983563.0387182
[2025-11-24 22:00:20] 2025-11-24 18:02:43,971 | INFO     | mean y: 2620780.8718291055
[2025-11-24 22:00:20] 2025-11-24 18:02:43,971 | INFO     | intersect: -9696238858.979212
[2025-11-24 22:00:20] 2025-11-24 18:02:43,978 | INFO     | chi2: 4.177049140104371
[2025-11-24 22:00:20] 2025-11-24 18:02:43,978 | INFO     | current chi2=4.177049140104371 (change=33.681603766974604 %)
[2025-11-24 22:00:20] 2025-11-24 18:02:43,979 | INFO     | sum of square deviations: 127697726172.53642
[2025-11-24 22:00:20] 2025-11-24 18:02:44,021 | INFO     | sum of deviations: 709931571570.2701
[2025-11-24 22:00:20] 2025-11-24 18:02:44,021 | INFO     | mean x: 1763983410.544355
[2025-11-24 22:00:20] 2025-11-24 18:02:44,021 | INFO     | mean y: 2620402.2190860217
[2025-11-24 22:00:20] 2025-11-24 18:02:44,021 | INFO     | intersect: -9804190982.813774
[2025-11-24 22:00:20] 2025-11-24 18:02:44,022 | INFO     | chi2: 4.1760690180235756
[2025-11-24 22:00:20] 2025-11-24 18:02:44,022 | INFO     | current chi2=4.1760690180235756 (change=0.02346446134389895 %)
[2025-11-24 22:00:20] 2025-11-24 18:02:44,023 | INFO     | right removable region: 743
[2025-11-24 22:00:20] 2025-11-24 18:02:44,028 | INFO     | sum of square deviations: 135577298767.47337
[2025-11-24 22:00:20] 2025-11-24 18:02:44,050 | INFO     | sum of deviations: -159381073204.01562
[2025-11-24 22:00:20] 2025-11-24 18:02:44,050 | INFO     | mean x: 1763984173.0263505
[2025-11-24 22:00:20] 2025-11-24 18:02:44,050 | INFO     | mean y: 2596964.6007905137
[2025-11-24 22:00:20] 2025-11-24 18:02:44,050 | INFO     | intersect: 2076289929.1879268
[2025-11-24 22:00:20] 2025-11-24 18:02:44,052 | INFO     | chi2: 10.618957630973599
[2025-11-24 22:00:20] 2025-11-24 18:02:44,052 | INFO     | current chi2=10.618957630973599 (change=21.889492065925083 %)
[2025-11-24 22:00:20] 2025-11-24 18:02:44,052 | INFO     | left removable region: 10
[2025-11-24 22:00:20] 2025-11-24 18:02:44,053 | INFO     | sum of square deviations: 122116484496.47763
[2025-11-24 22:00:20] 2025-11-24 18:02:44,115 | INFO     | sum of deviations: 386531862590.95953
[2025-11-24 22:00:20] 2025-11-24 18:02:44,115 | INFO     | mean x: 1763983685.0586631
[2025-11-24 22:00:20] 2025-11-24 18:02:44,115 | INFO     | mean y: 2639646.6521145976
[2025-11-24 22:00:20] 2025-11-24 18:02:44,115 | INFO     | intersect: -5580848136.976775
[2025-11-24 22:00:20] 2025-11-24 18:02:44,116 | INFO     | chi2: 0.5893707069984975
[2025-11-24 22:00:20] 2025-11-24 18:02:44,116 | INFO     | current memory leak: 3.17 B/s (using 733 data points, chi2=0.59)
[2025-11-24 22:00:20] 2025-11-24 18:02:44,118 | INFO     | could have reported an average CPU frequency of 2796 MHz (29 samples)
[2025-11-24 22:00:20] 2025-11-24 18:02:44,127 | INFO     | ..............................
[2025-11-24 22:00:20] 2025-11-24 18:02:44,127 | INFO     | . Timing measurements:
[2025-11-24 22:00:20] 2025-11-24 18:02:44,127 | INFO     | . get job = 0 s
[2025-11-24 22:00:20] 2025-11-24 18:02:44,127 | INFO     | . initial setup = 4 s
[2025-11-24 22:00:20] 2025-11-24 18:02:44,127 | INFO     | . payload setup = 17 s
[2025-11-24 22:00:20] 2025-11-24 18:02:44,127 | INFO     | . stage-in = 0 s
[2025-11-24 22:00:20] 2025-11-24 18:02:44,127 | INFO     | . payload execution = 46572 s
[2025-11-24 22:00:20] 2025-11-24 18:02:44,128 | INFO     | . stage-out = 9 s
[2025-11-24 22:00:20] 2025-11-24 18:02:44,128 | INFO     | . log creation = 0 s
[2025-11-24 22:00:20] 2025-11-24 18:02:44,128 | INFO     | ..............................
[2025-11-24 22:00:20] 2025-11-24 18:02:44,127 | INFO     | monitor loop #2578: job 0:6894053140 is in state 'finished'
[2025-11-24 22:00:20] 2025-11-24 18:02:44,139 | WARNING  | exception caught: deque index out of range
[2025-11-24 22:00:20] 2025-11-24 18:02:44,783 | INFO     | 
[2025-11-24 22:00:20] 2025-11-24 18:02:44,783 | INFO     | job summary report
[2025-11-24 22:00:20] 2025-11-24 18:02:44,783 | INFO     | --------------------------------------------------
[2025-11-24 22:00:20] 2025-11-24 18:02:44,783 | INFO     | PanDA job id: 6894053140
[2025-11-24 22:00:20] 2025-11-24 18:02:44,783 | INFO     | task id: 47523618
[2025-11-24 22:00:20] 2025-11-24 18:02:44,783 | INFO     | errors: (none)
[2025-11-24 22:00:20] 2025-11-24 18:02:44,783 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 22:00:20] 2025-11-24 18:02:44,783 | INFO     | pilot state: finished 
[2025-11-24 22:00:20] 2025-11-24 18:02:44,783 | INFO     | transexitcode: 0
[2025-11-24 22:00:20] 2025-11-24 18:02:44,783 | INFO     | exeerrorcode: 0
[2025-11-24 22:00:20] 2025-11-24 18:02:44,784 | INFO     | exeerrordiag: 
[2025-11-24 22:00:20] 2025-11-24 18:02:44,784 | INFO     | exitcode: 0
[2025-11-24 22:00:20] 2025-11-24 18:02:44,784 | INFO     | exitmsg: OK
[2025-11-24 22:00:20] 2025-11-24 18:02:44,784 | INFO     | cpuconsumptiontime: 71671 s
[2025-11-24 22:00:20] 2025-11-24 18:02:44,784 | INFO     | nevents: 400
[2025-11-24 22:00:20] 2025-11-24 18:02:44,784 | INFO     | neventsw: 0
[2025-11-24 22:00:20] 2025-11-24 18:02:44,784 | INFO     | pid: 638802
[2025-11-24 22:00:20] 2025-11-24 18:02:44,784 | INFO     | pgrp: 638802
[2025-11-24 22:00:20] 2025-11-24 18:02:44,784 | INFO     | corecount: 9
[2025-11-24 22:00:20] 2025-11-24 18:02:44,784 | INFO     | event service: False
[2025-11-24 22:00:20] 2025-11-24 18:02:44,784 | INFO     | sizes: {0: 2298387, 1: 2298387, 11: 2298415, 13: 2298705, 22: 2298761, 46597: 2344006, 46598: 2344133, 46610: 2353978, 46614: 2354034, 46651: 2354228}
[2025-11-24 22:00:20] 2025-11-24 18:02:44,784 | INFO     | --------------------------------------------------
[2025-11-24 22:00:20] 2025-11-24 18:02:44,784 | INFO     | 
[2025-11-24 22:00:20] 2025-11-24 18:02:44,784 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-24 22:00:20] 2025-11-24 18:02:45,124 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 22:00:20] 2025-11-24 18:02:45,126 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 22:00:20] 2025-11-24 18:02:45,126 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 22:00:20] 2025-11-24 18:02:45,126 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 22:00:20] 2025-11-24 18:02:45,126 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 22:00:20] 2025-11-24 18:02:45,126 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 22:00:20] 2025-11-24 18:02:45,126 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 22:00:20] 2025-11-24 18:02:45,127 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 22:00:20] 2025-11-24 18:02:45,127 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 22:00:20] 2025-11-24 18:02:45,127 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 22:00:20] 2025-11-24 18:02:45,127 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 22:00:20] 2025-11-24 18:02:45,127 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 22:00:20] 2025-11-24 18:02:45,127 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 22:00:20] 2025-11-24 18:02:45,127 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 22:00:20] 2025-11-24 18:02:45,127 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 22:00:20] 2025-11-24 18:02:45,127 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 22:00:20] 2025-11-24 18:02:45,160 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 22:00:20] 2025-11-24 18:02:45,160 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 22:00:20] 2025-11-24 18:02:45,160 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 22:00:20] 2025-11-24 18:02:45,160 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 22:00:20] 2025-11-24 18:02:45,160 | INFO     | job 6894053140 has completed (purged errors)
[2025-11-24 22:00:20] 2025-11-24 18:02:45,161 | INFO     | overall cleanup function is called
[2025-11-24 22:00:20] 2025-11-24 18:02:46,179 | INFO     | --- collectZombieJob: --- 10, [638802]
[2025-11-24 22:00:20] 2025-11-24 18:02:46,179 | INFO     | zombie collector waiting for pid 638802
[2025-11-24 22:00:20] 2025-11-24 18:02:46,179 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 22:00:20] 2025-11-24 18:02:46,179 | INFO     | collected zombie processes
[2025-11-24 22:00:20] 2025-11-24 18:02:46,179 | INFO     | will attempt to kill all subprocesses of pid=638802
[2025-11-24 22:00:20] 2025-11-24 18:02:50,516 | INFO     | process IDs to be killed: [638802] (in reverse order)
[2025-11-24 22:00:20] 2025-11-24 18:02:50,923 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 22:00:20] 2025-11-24 18:02:50,939 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 22:00:20] 2025-11-24 18:02:51,031 | INFO     | did not find any defunct processes belonging to 638802
[2025-11-24 22:00:20] 2025-11-24 18:02:51,135 | INFO     | did not find any defunct processes belonging to 638802
[2025-11-24 22:00:20] 2025-11-24 18:02:51,202 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 22:00:20] 2025-11-24 18:02:51,202 | INFO     | ready for new job
[2025-11-24 22:00:20] 2025-11-24 18:02:51,203 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 22:00:20] 2025-11-24 18:02:51,268 | INFO     | ***************************************
[2025-11-24 22:00:20] 2025-11-24 18:02:51,268 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 22:00:20] 2025-11-24 18:02:51,268 | INFO     | ***************************************
[2025-11-24 22:00:20] 2025-11-24 18:02:51,268 | INFO     | 
[2025-11-24 22:00:20] 2025-11-24 18:02:51,360 | INFO     | architecture information:
[2025-11-24 22:00:20] 2025-11-24 18:02:51,370 | INFO     | executing command: cat /etc/os-release
[2025-11-24 22:00:20] 2025-11-24 18:02:51,454 | INFO     | cat /etc/os-release:
[2025-11-24 22:00:20] NAME="CentOS Linux"
[2025-11-24 22:00:20] VERSION="7 (Core)"
[2025-11-24 22:00:20] ID="centos"
[2025-11-24 22:00:20] ID_LIKE="rhel fedora"
[2025-11-24 22:00:20] VERSION_ID="7"
[2025-11-24 22:00:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 22:00:20] ANSI_COLOR="0;31"
[2025-11-24 22:00:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 22:00:20] HOME_URL="https://www.centos.org/"
[2025-11-24 22:00:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 22:00:20] 
[2025-11-24 22:00:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 22:00:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 22:00:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 22:00:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 22:00:20] 
[2025-11-24 22:00:20] 2025-11-24 18:02:51,454 | INFO     | ***************************************
[2025-11-24 22:00:20] 2025-11-24 18:02:51,967 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-24 22:00:20] 2025-11-24 18:02:52,296 | INFO     | sufficient remaining disk space (69985107968 B)
[2025-11-24 22:00:20] 2025-11-24 18:02:52,296 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 22:00:20] 2025-11-24 18:02:52,296 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 22:00:20] 2025-11-24 18:02:52,296 | INFO     | update_server=False
[2025-11-24 22:00:20] 2025-11-24 18:02:52,297 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 22:00:20] 2025-11-24 18:02:52,414 | INFO     | all data control threads have been joined
[2025-11-24 22:00:20] 2025-11-24 18:02:52,415 | INFO     | all job control threads have been joined
[2025-11-24 22:00:20] 2025-11-24 18:02:52,941 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 22:00:20] 2025-11-24 18:02:53,059 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:00:20] 2025-11-24 18:02:53,059 | INFO     | aborting loop
[2025-11-24 22:00:20] 2025-11-24 18:02:53,330 | INFO     | [job] retrieve thread has finished
[2025-11-24 22:00:20] 2025-11-24 18:02:53,420 | INFO     | [data] control thread has finished
[2025-11-24 22:00:20] 2025-11-24 18:02:53,424 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 22:00:20] 2025-11-24 18:02:53,556 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 22:00:20] 2025-11-24 18:02:53,558 | INFO     | [job] control thread has finished
[2025-11-24 22:00:20] 2025-11-24 18:02:53,556 | INFO     | all payload control threads have been joined
[2025-11-24 22:00:20] 2025-11-24 18:02:53,690 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 22:00:20] 2025-11-24 18:02:53,690 | INFO     | [data] copytool_in thread has finished
[2025-11-24 22:00:20] 2025-11-24 18:02:53,920 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 22:00:20] 2025-11-24 18:02:53,945 | INFO     | [payload] validate_post thread has finished
[2025-11-24 22:00:20] 2025-11-24 18:02:54,050 | INFO     | [job] validate thread has finished
[2025-11-24 22:00:20] 2025-11-24 18:02:54,065 | INFO     | [job] job monitor thread has finished
[2025-11-24 22:00:20] 2025-11-24 18:02:54,154 | INFO     | [payload] failed_post thread has finished
[2025-11-24 22:00:20] 2025-11-24 18:02:54,695 | INFO     | [payload] control thread has finished
[2025-11-24 22:00:20] 2025-11-24 18:02:54,807 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 22:00:20] 2025-11-24 18:02:54,926 | INFO     | [job] queue monitor thread has finished
[2025-11-24 22:00:20] 2025-11-24 18:02:54,952 | INFO     | [data] copytool_out thread has finished
[2025-11-24 22:00:20] 2025-11-24 18:02:55,799 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 22:00:20] 2025-11-24 18:02:59,808 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 22:00:20] 2025-11-24 18:03:05,354 | INFO     | [monitor] cgroup control has ended
[2025-11-24 22:00:20] 2025-11-24 18:03:07,182 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140139185051456)>', '<ExcThread(monitor, started 140138835322624)>']
[2025-11-24 22:00:20] 2025-11-24 18:03:12,208 | INFO     | all workflow threads have been joined
[2025-11-24 22:00:20] 2025-11-24 18:03:12,208 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 22:00:20] 2025-11-24 18:03:12,208 | INFO     | traces error code: 0
[2025-11-24 22:00:20] 2025-11-24 18:03:12,209 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 22:00:20] 2025-11-24 18:03:21,341 | INFO     | PID=608468 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 22:00:20] 2025-11-24 18:03:21,341 | INFO     | .. there are 12 such processes running
[2025-11-24 22:00:20] 2025-11-24 18:03:21,341 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 22:00:20] 2025-11-24 18:03:21,342 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 22:00:20] 2025-11-24 18:03:21,342 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 22:00:20] 2025-11-24 18:03:21,342 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 22:00:20] 2025-11-24 18:03:21,342 | INFO     | [monitor] control thread has ended
[2025-11-24 22:00:20] 2025-11-24 18:03:24,552 [wrapper] ==== pilot stdout END ====
[2025-11-24 22:00:20] 2025-11-24 18:03:24,583 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 22:00:20] 2025-11-24 18:03:24,625 [wrapper] pilotpid: 608468
[2025-11-24 22:00:20] 2025-11-24 18:03:24,670 [wrapper] Pilot exit status: 0
[2025-11-24 22:00:20] 2025-11-24 18:03:24,828 [wrapper] pandaids: 6894053140
[2025-11-24 22:00:20] 2025-11-24 18:03:25,001 [wrapper] cleanup supervisor_pilot 1762048 608470
[2025-11-24 22:00:20] 2025-11-24 18:03:25,005 [wrapper] Test setup, not cleaning
[2025-11-24 22:00:20] 2025-11-24 18:03:25,008 [wrapper] apfmon messages muted
[2025-11-24 22:00:20] 2025-11-24 18:03:25,010 [wrapper] ==== wrapper stdout END ====
[2025-11-24 22:00:20] 2025-11-24 18:03:25,013 [wrapper] ==== wrapper stderr END ====
[2025-11-24 22:00:20]  *** Error codes and diagnostics ***
[2025-11-24 22:00:20]     "exeErrorCode": 0,
[2025-11-24 22:00:20]     "exeErrorDiag": "",
[2025-11-24 22:00:20]     "pilotErrorCode": 0,
[2025-11-24 22:00:20]     "pilotErrorDiag": "",
[2025-11-24 22:00:20]  *** Listing of results directory ***
[2025-11-24 22:00:20] total 605776
[2025-11-24 22:00:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 14:32 pilot3.tar.gz
[2025-11-24 22:00:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 14:40 queuedata.json
[2025-11-24 22:00:20] -rwx------. 1 boincer umatlas     36292 Nov 23 14:40 runpilot2-wrapper.sh
[2025-11-24 22:00:20] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 22:00:20] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:04 run_atlas
[2025-11-24 22:00:20] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:04 job.xml
[2025-11-24 22:00:20] -rw-r--r--. 2 boincer umatlas 306029121 Nov 24 00:04 EVNT.47523616._000004.pool.root.1
[2025-11-24 22:00:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:04 start_atlas.sh
[2025-11-24 22:00:20] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:04 shared
[2025-11-24 22:00:20] -rw-r--r--. 2 boincer umatlas    589954 Nov 24 00:04 input.tar.gz
[2025-11-24 22:00:20] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:04 boinc_lockfile
[2025-11-24 22:00:20] -rw-r--r--. 1 boincer umatlas      2610 Nov 24 00:04 pandaJob.out
[2025-11-24 22:00:20] -rw-------. 1 boincer umatlas        57 Nov 24 00:04 setup.sh.local
[2025-11-24 22:00:20] -rw-------. 1 boincer umatlas    989786 Nov 24 00:04 agis_schedconf.cvmfs.json
[2025-11-24 22:00:20] drwx------. 5 boincer umatlas      4096 Nov 24 00:04 pilot3
[2025-11-24 22:00:20] -rw-r--r--. 1 boincer umatlas       530 Nov 24 12:48 boinc_task_state.xml
[2025-11-24 22:00:20] -rw-------. 1 boincer umatlas 297531405 Nov 24 12:48 HITS.47523618._000086.pool.root.1
[2025-11-24 22:00:20] -rw-------. 1 boincer umatlas      1043 Nov 24 13:01 memory_monitor_summary.json
[2025-11-24 22:00:20] -rw-------. 1 boincer umatlas   1516227 Nov 24 13:01 agis_ddmendpoints.agis.ALL.json
[2025-11-24 22:00:20] -rw-------. 1 boincer umatlas    868139 Nov 24 13:02 log.47523618._000086.job.log.tgz.1
[2025-11-24 22:00:20] -rw-------. 1 boincer umatlas        95 Nov 24 13:02 pilot_heartbeat.json
[2025-11-24 22:00:20] -rw-------. 1 boincer umatlas      7819 Nov 24 13:02 heartbeat.json
[2025-11-24 22:00:20] -rw-------. 1 boincer umatlas       822 Nov 24 13:03 pilotlog.txt
[2025-11-24 22:00:20] -rw-------. 1 boincer umatlas   5552631 Nov 24 13:03 log.47523618._000086.job.log.1
[2025-11-24 22:00:20] -rw-------. 1 boincer umatlas       357 Nov 24 13:03 output.list
[2025-11-24 22:00:20] -rw-r--r--. 1 boincer umatlas       620 Nov 24 13:03 runtime_log
[2025-11-24 22:00:20] -rw-------. 1 boincer umatlas   6440960 Nov 24 13:03 result.tar.gz
[2025-11-24 22:00:20] -rw-r--r--. 1 boincer umatlas      9353 Nov 24 13:03 runtime_log.err
[2025-11-24 22:00:20] -rw-------. 1 boincer umatlas       660 Nov 24 13:03 4EbMDmj7Uh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWiIKDmZljxRm.diag
[2025-11-24 22:00:20] -rw-r--r--. 1 boincer umatlas      6841 Nov 24 21:56 init_data.xml
[2025-11-24 22:00:20] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 22:00 boinc_mmap_file
[2025-11-24 22:00:20] -rw-r--r--. 1 boincer umatlas        27 Nov 24 22:00 wrapper_checkpoint.txt
[2025-11-24 22:00:20] -rw-r--r--. 1 boincer umatlas     21176 Nov 24 22:00 stderr.txt
[2025-11-24 22:00:20] HITS file was successfully produced:
[2025-11-24 22:00:21] -rw-------. 1 boincer umatlas 297531405 Nov 24 12:48 shared/HITS.pool.root.1
[2025-11-24 22:00:21]  *** Contents of shared directory: ***
[2025-11-24 22:00:21] total 596316
[2025-11-24 22:00:21] -rw-r--r--. 2 boincer umatlas 306029121 Nov 24 00:04 ATLAS.root_0
[2025-11-24 22:00:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:04 start_atlas.sh
[2025-11-24 22:00:21] -rw-r--r--. 2 boincer umatlas    589954 Nov 24 00:04 input.tar.gz
[2025-11-24 22:00:21] -rw-------. 1 boincer umatlas 297531405 Nov 24 12:48 HITS.pool.root.1
[2025-11-24 22:00:21] -rw-------. 1 boincer umatlas   6440960 Nov 24 13:03 result.tar.gz
22:00:22 (595508): run_atlas exited; CPU time 72869.718056
22:00:22 (595508): called boinc_finish(0)

</stderr_txt>
]]>

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