Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:48 (956903): wrapper (7.7.26015): starting
00:04:48 (956903): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 00:04:48] Arguments: --nthreads 8
[2025-11-24 00:04:48] Threads: 8
[2025-11-24 00:04:48] Checking for CVMFS
[2025-11-24 00:04:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:04:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:04:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:04:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:04:50] 2.13.2.0 6639 30516 310560 153233 0 208 25835715 40960001 14611 16776704 0 49220732 99.679 40903845 40410 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:04:50] CVMFS is ok
[2025-11-24 00:04:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:04:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:04:50] Further information can be found at the LHC@home message board.
[2025-11-24 00:04:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:04:50] Checking for apptainer binary...
[2025-11-24 00:04:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:04:50] Running /usr/bin/apptainer --version
[2025-11-24 00:04:50] apptainer version 1.4.4-1.el9
[2025-11-24 00:04:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:04:50] c-206-37.aglt2.org
[2025-11-24 00:04:50] apptainer works
[2025-11-24 00:04:51] Set ATHENA_PROC_NUMBER=8
[2025-11-24 00:04:51] Set ATHENA_CORE_NUMBER=8
[2025-11-24 00:04:51] Starting ATLAS job with PandaID=6895356203
[2025-11-24 00:04:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 08:58:55]  *** The last 200 lines of the pilot log: ***
[2025-11-25 08:58:55] 2025-11-25 13:57:46,701 | INFO     | job 6895356203 has finished - writing final server update
[2025-11-25 08:58:55] 2025-11-25 13:57:46,701 | INFO     | total number of processed events: 1000 (read)
[2025-11-25 08:58:55] 2025-11-25 13:57:46,717 | INFO     | executing command: lscpu
[2025-11-25 08:58:55] 2025-11-25 13:57:46,848 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 08:58:55] 2025-11-25 13:57:47,584 | INFO     | monitor loop #7887: job 0:6895356203 is in state 'finished'
[2025-11-25 08:58:55] 2025-11-25 13:57:47,584 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 08:58:55] 2025-11-25 13:57:48,274 | INFO     | time since job start (118347s) is within the limit (172800.0s)
[2025-11-25 08:58:55] 2025-11-25 13:57:50,093 | INFO     | monitor loop #7888: job 0:6895356203 is in state 'finished'
[2025-11-25 08:58:55] 2025-11-25 13:57:50,093 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 08:58:55] 2025-11-25 13:57:50,282 | INFO     | time since job start (118349s) is within the limit (172800.0s)
[2025-11-25 08:58:55] 2025-11-25 13:57:52,292 | INFO     | time since job start (118351s) is within the limit (172800.0s)
[2025-11-25 08:58:55] 2025-11-25 13:57:52,598 | INFO     | monitor loop #7889: job 0:6895356203 is in state 'finished'
[2025-11-25 08:58:55] 2025-11-25 13:57:52,598 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 08:58:55] 2025-11-25 13:57:54,302 | INFO     | time since job start (118353s) is within the limit (172800.0s)
[2025-11-25 08:58:55] 2025-11-25 13:57:55,106 | INFO     | monitor loop #7890: job 0:6895356203 is in state 'finished'
[2025-11-25 08:58:55] 2025-11-25 13:57:55,106 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 08:58:55] 2025-11-25 13:57:56,269 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 08:58:55] 2025-11-25 13:57:56,273 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3289.2596406250004
[2025-11-25 08:58:55] 2025-11-25 13:57:56,283 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895356203/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 08:58:55] 2025-11-25 13:57:56,284 | INFO     | extracted standard info from prmon json
[2025-11-25 08:58:55] 2025-11-25 13:57:56,284 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 08:58:55] 2025-11-25 13:57:56,284 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 08:58:55] 2025-11-25 13:57:56,310 | INFO     | fitting pss+swap vs Time
[2025-11-25 08:58:55] 2025-11-25 13:57:56,313 | INFO     | sum of square deviations: 2260612579440.9995
[2025-11-25 08:58:55] 2025-11-25 13:57:56,379 | INFO     | time since job start (118355s) is within the limit (172800.0s)
[2025-11-25 08:58:55] 2025-11-25 13:57:56,469 | INFO     | sum of deviations: 10592077428427.424
[2025-11-25 08:58:55] 2025-11-25 13:57:56,470 | INFO     | mean x: 1764019906.0005157
[2025-11-25 08:58:55] 2025-11-25 13:57:56,470 | INFO     | mean y: 2852869.587416194
[2025-11-25 08:58:55] 2025-11-25 13:57:56,470 | INFO     | intersect: -8262444598.705462
[2025-11-25 08:58:55] 2025-11-25 13:57:56,472 | INFO     | chi2: 12.992048737771904
[2025-11-25 08:58:55] 2025-11-25 13:57:56,474 | INFO     | sum of square deviations: 2243170825493.4834
[2025-11-25 08:58:55] 2025-11-25 13:57:56,541 | INFO     | sum of deviations: 11229535237538.012
[2025-11-25 08:58:55] 2025-11-25 13:57:56,541 | INFO     | mean x: 1764019753.5031023
[2025-11-25 08:58:55] 2025-11-25 13:57:56,541 | INFO     | mean y: 2858443.581695967
[2025-11-25 08:58:55] 2025-11-25 13:57:56,541 | INFO     | intersect: -8827999089.22271
[2025-11-25 08:58:55] 2025-11-25 13:57:56,543 | INFO     | chi2: 9.871268548206569
[2025-11-25 08:58:55] 2025-11-25 13:57:56,543 | INFO     | current chi2=9.871268548206569 (change=24.020693368338915 %)
[2025-11-25 08:58:55] 2025-11-25 13:57:56,543 | INFO     | right removable region: 1933
[2025-11-25 08:58:55] 2025-11-25 13:57:56,545 | INFO     | sum of square deviations: 2243169642093.484
[2025-11-25 08:58:55] 2025-11-25 13:57:56,694 | INFO     | sum of deviations: 9964580441824.719
[2025-11-25 08:58:55] 2025-11-25 13:57:56,694 | INFO     | mean x: 1764020058.5031023
[2025-11-25 08:58:55] 2025-11-25 13:57:56,694 | INFO     | mean y: 2858354.208893485
[2025-11-25 08:58:55] 2025-11-25 13:57:56,694 | INFO     | intersect: -7833249733.247988
[2025-11-25 08:58:55] 2025-11-25 13:57:56,696 | INFO     | chi2: 10.272622023557638
[2025-11-25 08:58:55] 2025-11-25 13:57:56,696 | INFO     | current chi2=10.272622023557638 (change=20.931469463380722 %)
[2025-11-25 08:58:55] 2025-11-25 13:57:56,696 | INFO     | left removable region: 10
[2025-11-25 08:58:55] 2025-11-25 13:57:56,703 | INFO     | sum of square deviations: 2205113032507.866
[2025-11-25 08:58:55] 2025-11-25 13:57:56,797 | INFO     | sum of deviations: 10254921867685.805
[2025-11-25 08:58:55] 2025-11-25 13:57:56,798 | INFO     | mean x: 1764020028.0083203
[2025-11-25 08:58:55] 2025-11-25 13:57:56,798 | INFO     | mean y: 2869546.261570463
[2025-11-25 08:58:55] 2025-11-25 13:57:56,798 | INFO     | intersect: -8200740560.602064
[2025-11-25 08:58:55] 2025-11-25 13:57:56,799 | INFO     | chi2: 4.942099751488796
[2025-11-25 08:58:55] 2025-11-25 13:57:56,800 | INFO     | current memory leak: 4.65 B/s (using 1923 data points, chi2=4.94)
[2025-11-25 08:58:55] 2025-11-25 13:57:56,805 | INFO     | could have reported an average CPU frequency of 3277 MHz (68 samples)
[2025-11-25 08:58:55] 2025-11-25 13:57:56,805 | INFO     | ..............................
[2025-11-25 08:58:55] 2025-11-25 13:57:56,806 | INFO     | . Timing measurements:
[2025-11-25 08:58:55] 2025-11-25 13:57:56,806 | INFO     | . get job = 0 s
[2025-11-25 08:58:55] 2025-11-25 13:57:56,806 | INFO     | . initial setup = 3 s
[2025-11-25 08:58:55] 2025-11-25 13:57:56,806 | INFO     | . payload setup = 24 s
[2025-11-25 08:58:55] 2025-11-25 13:57:56,806 | INFO     | . stage-in = 0 s
[2025-11-25 08:58:55] 2025-11-25 13:57:56,806 | INFO     | . payload execution = 118270 s
[2025-11-25 08:58:55] 2025-11-25 13:57:56,806 | INFO     | . stage-out = 5 s
[2025-11-25 08:58:55] 2025-11-25 13:57:56,806 | INFO     | . log creation = 1 s
[2025-11-25 08:58:55] 2025-11-25 13:57:56,806 | INFO     | ..............................
[2025-11-25 08:58:55] 2025-11-25 13:57:56,981 | INFO     | 
[2025-11-25 08:58:55] 2025-11-25 13:57:56,981 | INFO     | job summary report
[2025-11-25 08:58:55] 2025-11-25 13:57:56,981 | INFO     | --------------------------------------------------
[2025-11-25 08:58:55] 2025-11-25 13:57:56,981 | INFO     | PanDA job id: 6895356203
[2025-11-25 08:58:55] 2025-11-25 13:57:56,981 | INFO     | task id: 47556137
[2025-11-25 08:58:55] 2025-11-25 13:57:56,981 | INFO     | errors: (none)
[2025-11-25 08:58:55] 2025-11-25 13:57:56,981 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 08:58:55] 2025-11-25 13:57:56,981 | INFO     | pilot state: finished 
[2025-11-25 08:58:55] 2025-11-25 13:57:56,981 | INFO     | transexitcode: 0
[2025-11-25 08:58:55] 2025-11-25 13:57:56,981 | INFO     | exeerrorcode: 0
[2025-11-25 08:58:55] 2025-11-25 13:57:56,981 | INFO     | exeerrordiag: 
[2025-11-25 08:58:55] 2025-11-25 13:57:56,981 | INFO     | exitcode: 0
[2025-11-25 08:58:55] 2025-11-25 13:57:56,981 | INFO     | exitmsg: OK
[2025-11-25 08:58:55] 2025-11-25 13:57:56,981 | INFO     | cpuconsumptiontime: 202163 s
[2025-11-25 08:58:55] 2025-11-25 13:57:56,981 | INFO     | nevents: 1000
[2025-11-25 08:58:55] 2025-11-25 13:57:56,981 | INFO     | neventsw: 0
[2025-11-25 08:58:55] 2025-11-25 13:57:56,982 | INFO     | pid: 991080
[2025-11-25 08:58:55] 2025-11-25 13:57:56,982 | INFO     | pgrp: 991080
[2025-11-25 08:58:55] 2025-11-25 13:57:56,982 | INFO     | corecount: 8
[2025-11-25 08:58:55] 2025-11-25 13:57:56,982 | INFO     | event service: False
[2025-11-25 08:58:55] 2025-11-25 13:57:56,982 | INFO     | sizes: {0: 2298756, 11: 2298756, 13: 2299046, 22: 2299102, 118298: 2379509, 118299: 2379508, 118304: 2389482, 118306: 2389538, 118318: 2389784}
[2025-11-25 08:58:55] 2025-11-25 13:57:56,982 | INFO     | --------------------------------------------------
[2025-11-25 08:58:55] 2025-11-25 13:57:56,982 | INFO     | 
[2025-11-25 08:58:55] 2025-11-25 13:57:56,982 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 08:58:55] 2025-11-25 13:57:57,011 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 08:58:55] 2025-11-25 13:57:57,012 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 08:58:55] 2025-11-25 13:57:57,012 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 08:58:55] 2025-11-25 13:57:57,012 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 08:58:55] 2025-11-25 13:57:57,012 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 08:58:55] 2025-11-25 13:57:57,012 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 08:58:55] 2025-11-25 13:57:57,012 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 08:58:55] 2025-11-25 13:57:57,012 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 08:58:55] 2025-11-25 13:57:57,012 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 08:58:55] 2025-11-25 13:57:57,012 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 08:58:55] 2025-11-25 13:57:57,013 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 08:58:55] 2025-11-25 13:57:57,013 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 08:58:55] 2025-11-25 13:57:57,013 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 08:58:55] 2025-11-25 13:57:57,013 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 08:58:55] 2025-11-25 13:57:57,013 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 08:58:55] 2025-11-25 13:57:57,013 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 08:58:55] 2025-11-25 13:57:57,013 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 08:58:55] 2025-11-25 13:57:57,013 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 08:58:55] 2025-11-25 13:57:57,013 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 08:58:55] 2025-11-25 13:57:57,013 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 08:58:55] 2025-11-25 13:57:57,013 | INFO     | job 6895356203 has completed (purged errors)
[2025-11-25 08:58:55] 2025-11-25 13:57:57,014 | INFO     | overall cleanup function is called
[2025-11-25 08:58:55] 2025-11-25 13:57:58,032 | INFO     | --- collectZombieJob: --- 10, [991080]
[2025-11-25 08:58:55] 2025-11-25 13:57:58,032 | INFO     | zombie collector waiting for pid 991080
[2025-11-25 08:58:55] 2025-11-25 13:57:58,032 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 08:58:55] 2025-11-25 13:57:58,032 | INFO     | collected zombie processes
[2025-11-25 08:58:55] 2025-11-25 13:57:58,032 | INFO     | will attempt to kill all subprocesses of pid=991080
[2025-11-25 08:58:55] 2025-11-25 13:57:58,436 | INFO     | process IDs to be killed: [991080] (in reverse order)
[2025-11-25 08:58:55] 2025-11-25 13:57:58,558 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 08:58:55] 2025-11-25 13:57:58,559 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 08:58:55] 2025-11-25 13:57:58,583 | INFO     | did not find any defunct processes belonging to 991080
[2025-11-25 08:58:55] 2025-11-25 13:57:58,595 | INFO     | did not find any defunct processes belonging to 991080
[2025-11-25 08:58:55] 2025-11-25 13:57:58,596 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 08:58:55] 2025-11-25 13:57:58,596 | INFO     | ready for new job
[2025-11-25 08:58:55] 2025-11-25 13:57:58,596 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 08:58:55] 2025-11-25 13:57:58,613 | INFO     | ***************************************
[2025-11-25 08:58:55] 2025-11-25 13:57:58,618 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 08:58:55] 2025-11-25 13:57:58,618 | INFO     | ***************************************
[2025-11-25 08:58:55] 2025-11-25 13:57:58,618 | INFO     | 
[2025-11-25 08:58:55] 2025-11-25 13:57:58,621 | INFO     | architecture information:
[2025-11-25 08:58:55] 2025-11-25 13:57:58,626 | INFO     | executing command: cat /etc/os-release
[2025-11-25 08:58:55] 2025-11-25 13:57:58,659 | INFO     | cat /etc/os-release:
[2025-11-25 08:58:55] NAME="CentOS Linux"
[2025-11-25 08:58:55] VERSION="7 (Core)"
[2025-11-25 08:58:55] ID="centos"
[2025-11-25 08:58:55] ID_LIKE="rhel fedora"
[2025-11-25 08:58:55] VERSION_ID="7"
[2025-11-25 08:58:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 08:58:55] ANSI_COLOR="0;31"
[2025-11-25 08:58:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 08:58:55] HOME_URL="https://www.centos.org/"
[2025-11-25 08:58:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 08:58:55] 
[2025-11-25 08:58:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 08:58:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 08:58:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 08:58:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 08:58:55] 
[2025-11-25 08:58:55] 2025-11-25 13:57:58,659 | INFO     | ***************************************
[2025-11-25 08:58:55] 2025-11-25 13:57:59,163 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 08:58:55] 2025-11-25 13:57:59,223 | INFO     | sufficient remaining disk space (79462137856 B)
[2025-11-25 08:58:55] 2025-11-25 13:57:59,223 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 08:58:55] 2025-11-25 13:57:59,223 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 08:58:55] 2025-11-25 13:57:59,223 | INFO     | update_server=False
[2025-11-25 08:58:55] 2025-11-25 13:57:59,223 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 08:58:55] 2025-11-25 13:57:59,224 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 08:58:55] 2025-11-25 13:57:59,225 | INFO     | all job control threads have been joined
[2025-11-25 08:58:55] 2025-11-25 13:57:59,228 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 08:58:55] 2025-11-25 13:57:59,228 | INFO     | aborting loop
[2025-11-25 08:58:55] 2025-11-25 13:57:59,317 | INFO     | all data control threads have been joined
[2025-11-25 08:58:55] 2025-11-25 13:57:59,647 | INFO     | all payload control threads have been joined
[2025-11-25 08:58:55] 2025-11-25 13:57:59,885 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 08:58:55] 2025-11-25 13:58:00,229 | INFO     | [job] retrieve thread has finished
[2025-11-25 08:58:55] 2025-11-25 13:58:00,258 | INFO     | [job] job monitor thread has finished
[2025-11-25 08:58:55] 2025-11-25 13:58:00,260 | INFO     | [job] control thread has finished
[2025-11-25 08:58:55] 2025-11-25 13:58:00,325 | INFO     | [data] control thread has finished
[2025-11-25 08:58:55] 2025-11-25 13:58:00,596 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 08:58:55] 2025-11-25 13:58:00,653 | INFO     | [payload] control thread has finished
[2025-11-25 08:58:55] 2025-11-25 13:58:00,677 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 08:58:55] 2025-11-25 13:58:00,857 | INFO     | [job] validate thread has finished
[2025-11-25 08:58:55] 2025-11-25 13:58:01,179 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 08:58:55] 2025-11-25 13:58:01,232 | INFO     | [data] copytool_out thread has finished
[2025-11-25 08:58:55] 2025-11-25 13:58:01,386 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 08:58:55] 2025-11-25 13:58:01,386 | INFO     | [data] copytool_in thread has finished
[2025-11-25 08:58:55] 2025-11-25 13:58:01,504 | INFO     | [payload] failed_post thread has finished
[2025-11-25 08:58:55] 2025-11-25 13:58:01,504 | INFO     | [payload] validate_post thread has finished
[2025-11-25 08:58:55] 2025-11-25 13:58:02,000 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 08:58:55] 2025-11-25 13:58:03,006 | INFO     | [job] queue monitor thread has finished
[2025-11-25 08:58:55] 2025-11-25 13:58:03,898 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 08:58:55] 2025-11-25 13:58:29,857 | INFO     | PID=964254 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 08:58:55] 2025-11-25 13:58:29,857 | INFO     | .. there are 20 such processes running
[2025-11-25 08:58:55] 2025-11-25 13:58:29,858 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 08:58:55] 2025-11-25 13:58:29,858 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 08:58:55] 2025-11-25 13:58:29,858 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 08:58:55] 2025-11-25 13:58:48,828 | INFO     | [monitor] cgroup control has ended
[2025-11-25 08:58:55] 2025-11-25 13:58:49,408 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140387742271296)>', '<ExcThread(monitor, started 140387096188672)>']
[2025-11-25 08:58:55] 2025-11-25 13:58:50,000 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 08:58:55] 2025-11-25 13:58:50,000 | INFO     | [monitor] control thread has ended
[2025-11-25 08:58:55] 2025-11-25 13:58:54,434 | INFO     | all workflow threads have been joined
[2025-11-25 08:58:55] 2025-11-25 13:58:54,434 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 08:58:55] 2025-11-25 13:58:54,434 | INFO     | traces error code: 0
[2025-11-25 08:58:55] 2025-11-25 13:58:54,434 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 08:58:55] 2025-11-25 13:58:54,720 [wrapper] ==== pilot stdout END ====
[2025-11-25 08:58:55] 2025-11-25 13:58:54,724 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 08:58:55] 2025-11-25 13:58:54,728 [wrapper] pilotpid: 964254
[2025-11-25 08:58:55] 2025-11-25 13:58:54,740 [wrapper] Pilot exit status: 0
[2025-11-25 08:58:55] 2025-11-25 13:58:54,779 [wrapper] pandaids: 6895356203
[2025-11-25 08:58:55] 2025-11-25 13:58:54,868 [wrapper] cleanup supervisor_pilot 1534837 964255
[2025-11-25 08:58:55] 2025-11-25 13:58:54,873 [wrapper] Test setup, not cleaning
[2025-11-25 08:58:55] 2025-11-25 13:58:54,877 [wrapper] apfmon messages muted
[2025-11-25 08:58:55] 2025-11-25 13:58:54,880 [wrapper] ==== wrapper stdout END ====
[2025-11-25 08:58:55] 2025-11-25 13:58:54,883 [wrapper] ==== wrapper stderr END ====
[2025-11-25 08:58:55]  *** Error codes and diagnostics ***
[2025-11-25 08:58:55]     "exeErrorCode": 0,
[2025-11-25 08:58:55]     "exeErrorDiag": "",
[2025-11-25 08:58:55]     "pilotErrorCode": 0,
[2025-11-25 08:58:55]     "pilotErrorDiag": "",
[2025-11-25 08:58:55]  *** Listing of results directory ***
[2025-11-25 08:58:55] total 1339732
[2025-11-25 08:58:55] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 05:16 pilot3.tar.gz
[2025-11-25 08:58:55] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 05:32 queuedata.json
[2025-11-25 08:58:55] -rwx------. 1 boincer umatlas     36292 Nov 23 05:34 runpilot2-wrapper.sh
[2025-11-25 08:58:55] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 08:58:55] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:04 run_atlas
[2025-11-25 08:58:55] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:04 job.xml
[2025-11-25 08:58:55] -rw-r--r--. 2 boincer umatlas 408013443 Nov 24 00:04 EVNT.47483658._000691.pool.root.1
[2025-11-25 08:58:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:04 start_atlas.sh
[2025-11-25 08:58:55] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:04 shared
[2025-11-25 08:58:55] -rw-r--r--. 2 boincer umatlas    590102 Nov 24 00:04 input.tar.gz
[2025-11-25 08:58:55] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:04 boinc_lockfile
[2025-11-25 08:58:55] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 00:04 pandaJob.out
[2025-11-25 08:58:55] -rw-------. 1 boincer umatlas        57 Nov 24 00:04 setup.sh.local
[2025-11-25 08:58:55] -rw-------. 1 boincer umatlas    989786 Nov 24 00:05 agis_schedconf.cvmfs.json
[2025-11-25 08:58:55] drwx------. 5 boincer umatlas      4096 Nov 24 00:05 pilot3
[2025-11-25 08:58:55] -rw-r--r--. 1 boincer umatlas       533 Nov 25 08:45 boinc_task_state.xml
[2025-11-25 08:58:55] -rw-------. 1 boincer umatlas 922520557 Nov 25 08:57 HITS.47556137._006864.pool.root.1
[2025-11-25 08:58:55] -rw-r--r--. 1 boincer umatlas      6902 Nov 25 08:57 init_data.xml
[2025-11-25 08:58:55] -rw-------. 1 boincer umatlas      1061 Nov 25 08:57 memory_monitor_summary.json
[2025-11-25 08:58:55] -rw-------. 1 boincer umatlas   1516240 Nov 25 08:57 agis_ddmendpoints.agis.ALL.json
[2025-11-25 08:58:55] -rw-------. 1 boincer umatlas   2887070 Nov 25 08:57 log.47556137._006864.job.log.tgz.1
[2025-11-25 08:58:55] -rw-------. 1 boincer umatlas      8602 Nov 25 08:57 heartbeat.json
[2025-11-25 08:58:55] -rw-------. 1 boincer umatlas        95 Nov 25 08:58 pilot_heartbeat.json
[2025-11-25 08:58:55] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 08:58 boinc_mmap_file
[2025-11-25 08:58:55] -rw-r--r--. 1 boincer umatlas        29 Nov 25 08:58 wrapper_checkpoint.txt
[2025-11-25 08:58:55] -rw-------. 1 boincer umatlas      4823 Nov 25 08:58 pilotlog.txt
[2025-11-25 08:58:55] -rw-------. 1 boincer umatlas  15829503 Nov 25 08:58 log.47556137._006864.job.log.1
[2025-11-25 08:58:55] -rw-------. 1 boincer umatlas       353 Nov 25 08:58 output.list
[2025-11-25 08:58:55] -rw-r--r--. 1 boincer umatlas       620 Nov 25 08:58 runtime_log
[2025-11-25 08:58:55] -rw-------. 1 boincer umatlas  18739200 Nov 25 08:58 result.tar.gz
[2025-11-25 08:58:55] -rw-r--r--. 1 boincer umatlas      9344 Nov 25 08:58 runtime_log.err
[2025-11-25 08:58:55] -rw-------. 1 boincer umatlas       666 Nov 25 08:58 AVaMDm3aMh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0nKKDmZOCEGn.diag
[2025-11-25 08:58:55] -rw-r--r--. 1 boincer umatlas     21758 Nov 25 08:58 stderr.txt
[2025-11-25 08:58:55] HITS file was successfully produced:
[2025-11-25 08:58:55] -rw-------. 1 boincer umatlas 922520557 Nov 25 08:57 shared/HITS.pool.root.1
[2025-11-25 08:58:55]  *** Contents of shared directory: ***
[2025-11-25 08:58:55] total 1318256
[2025-11-25 08:58:55] -rw-r--r--. 2 boincer umatlas 408013443 Nov 24 00:04 ATLAS.root_0
[2025-11-25 08:58:55] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:04 start_atlas.sh
[2025-11-25 08:58:55] -rw-r--r--. 2 boincer umatlas    590102 Nov 24 00:04 input.tar.gz
[2025-11-25 08:58:55] -rw-------. 1 boincer umatlas 922520557 Nov 25 08:57 HITS.pool.root.1
[2025-11-25 08:58:55] -rw-------. 1 boincer umatlas  18739200 Nov 25 08:58 result.tar.gz
08:58:56 (956903): run_atlas exited; CPU time 202506.466958
08:58:56 (956903): called boinc_finish(0)

</stderr_txt>
]]>

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