Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:40 (70503): wrapper (7.7.26015): starting
00:03:40 (70503): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:03:40] Arguments: --nthreads 9
[2025-11-24 00:03:40] Threads: 9
[2025-11-24 00:03:40] Checking for CVMFS
[2025-11-24 00:03:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:03:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:03:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:03:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:03:43] 2.13.3.0 9955 26680 313804 153233 0 143 17196810 32935936 27399 16776704 0 159292085 99.796 84393699 33208 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:03:43] CVMFS is ok
[2025-11-24 00:03:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:03:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:03:43] Further information can be found at the LHC@home message board.
[2025-11-24 00:03:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:03:43] Checking for apptainer binary...
[2025-11-24 00:03:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:03:43] Running /usr/bin/apptainer --version
[2025-11-24 00:03:44] apptainer version 1.4.4-1.el9
[2025-11-24 00:03:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:03:46] c-5-1.aglt2.org
[2025-11-24 00:03:46] apptainer works
[2025-11-24 00:03:46] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:03:46] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:03:46] Starting ATLAS job with PandaID=6895356201
[2025-11-24 00:03:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 02:03:29]  *** The last 200 lines of the pilot log: ***
[2025-11-25 02:03:29] 2025-11-25 07:02:42,726 | INFO     | time since job start (93454s) is within the limit (172800.0s)
[2025-11-25 02:03:29] 2025-11-25 07:02:44,125 | INFO     | monitor loop #5557: job 0:6895356201 is in state 'finished'
[2025-11-25 02:03:29] 2025-11-25 07:02:44,125 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:03:29] 2025-11-25 07:02:44,735 | INFO     | time since job start (93456s) is within the limit (172800.0s)
[2025-11-25 02:03:29] 2025-11-25 07:02:46,633 | INFO     | monitor loop #5558: job 0:6895356201 is in state 'finished'
[2025-11-25 02:03:29] 2025-11-25 07:02:46,633 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:03:29] 2025-11-25 07:02:46,744 | INFO     | time since job start (93458s) is within the limit (172800.0s)
[2025-11-25 02:03:29] 2025-11-25 07:02:48,766 | INFO     | time since job start (93460s) is within the limit (172800.0s)
[2025-11-25 02:03:29] 2025-11-25 07:02:49,148 | INFO     | monitor loop #5559: job 0:6895356201 is in state 'finished'
[2025-11-25 02:03:29] 2025-11-25 07:02:49,148 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:03:29] 2025-11-25 07:02:50,775 | INFO     | time since job start (93462s) is within the limit (172800.0s)
[2025-11-25 02:03:29] 2025-11-25 07:02:51,655 | INFO     | monitor loop #5560: job 0:6895356201 is in state 'finished'
[2025-11-25 02:03:29] 2025-11-25 07:02:51,655 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:03:29] 2025-11-25 07:02:52,426 | INFO     | PID=77670 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 02:03:29] 2025-11-25 07:02:52,426 | INFO     | .. there are 43 such processes running
[2025-11-25 02:03:29] 2025-11-25 07:02:52,640 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 02:03:29] 2025-11-25 07:02:52,646 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0406250000005
[2025-11-25 02:03:29] 2025-11-25 07:02:52,653 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895356201/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 02:03:29] 2025-11-25 07:02:52,654 | INFO     | extracted standard info from prmon json
[2025-11-25 02:03:29] 2025-11-25 07:02:52,654 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 02:03:29] 2025-11-25 07:02:52,654 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 02:03:29] 2025-11-25 07:02:52,682 | INFO     | fitting pss+swap vs Time
[2025-11-25 02:03:29] 2025-11-25 07:02:52,684 | INFO     | sum of square deviations: 1108338934879.0796
[2025-11-25 02:03:29] 2025-11-25 07:02:52,742 | INFO     | sum of deviations: 5517435467517.727
[2025-11-25 02:03:29] 2025-11-25 07:02:52,742 | INFO     | mean x: 1764007464.7246566
[2025-11-25 02:03:29] 2025-11-25 07:02:52,742 | INFO     | mean y: 3050084.3413996077
[2025-11-25 02:03:29] 2025-11-25 07:02:52,743 | INFO     | intersect: -8778376828.085617
[2025-11-25 02:03:29] 2025-11-25 07:02:52,745 | INFO     | chi2: 18.299540413054146
[2025-11-25 02:03:29] 2025-11-25 07:02:52,747 | INFO     | sum of square deviations: 1097501377794.1597
[2025-11-25 02:03:29] 2025-11-25 07:02:52,804 | INFO     | sum of deviations: 6051335494226.874
[2025-11-25 02:03:29] 2025-11-25 07:02:52,804 | INFO     | mean x: 1764007312.230315
[2025-11-25 02:03:29] 2025-11-25 07:02:52,804 | INFO     | mean y: 3057595.721128609
[2025-11-25 02:03:29] 2025-11-25 07:02:52,805 | INFO     | intersect: -9723217265.117464
[2025-11-25 02:03:29] 2025-11-25 07:02:52,807 | INFO     | chi2: 15.183472729562656
[2025-11-25 02:03:29] 2025-11-25 07:02:52,807 | INFO     | current chi2=15.183472729562656 (change=17.028119904413636 %)
[2025-11-25 02:03:29] 2025-11-25 07:02:52,807 | INFO     | right removable region: 1523
[2025-11-25 02:03:29] 2025-11-25 07:02:52,809 | INFO     | sum of square deviations: 1097499769224.1588
[2025-11-25 02:03:29] 2025-11-25 07:02:52,869 | INFO     | sum of deviations: 4852557871283.411
[2025-11-25 02:03:29] 2025-11-25 07:02:52,869 | INFO     | mean x: 1764007617.230315
[2025-11-25 02:03:29] 2025-11-25 07:02:52,869 | INFO     | mean y: 3059438.1640419946
[2025-11-25 02:03:29] 2025-11-25 07:02:52,870 | INFO     | intersect: -7796440195.486025
[2025-11-25 02:03:29] 2025-11-25 07:02:52,872 | INFO     | chi2: 13.965028334423014
[2025-11-25 02:03:29] 2025-11-25 07:02:52,872 | INFO     | current chi2=13.965028334423014 (change=23.686453215727035 %)
[2025-11-25 02:03:29] 2025-11-25 07:02:52,872 | INFO     | left removable region: 10
[2025-11-25 02:03:29] 2025-11-25 07:02:52,874 | INFO     | sum of square deviations: 1073904815839.471
[2025-11-25 02:03:29] 2025-11-25 07:02:52,931 | INFO     | sum of deviations: 4929708484016.157
[2025-11-25 02:03:29] 2025-11-25 07:02:52,932 | INFO     | mean x: 1764007586.742234
[2025-11-25 02:03:29] 2025-11-25 07:02:52,932 | INFO     | mean y: 3076411.6516853934
[2025-11-25 02:03:29] 2025-11-25 07:02:52,932 | INFO     | intersect: -8094515700.768785
[2025-11-25 02:03:29] 2025-11-25 07:02:52,935 | INFO     | chi2: 7.310379502732248
[2025-11-25 02:03:29] 2025-11-25 07:02:52,935 | INFO     | current memory leak: 4.59 B/s (using 1513 data points, chi2=7.31)
[2025-11-25 02:03:29] 2025-11-25 07:02:52,936 | INFO     | could have reported an average CPU frequency of 2600 MHz (54 samples)
[2025-11-25 02:03:29] 2025-11-25 07:02:52,936 | INFO     | ..............................
[2025-11-25 02:03:29] 2025-11-25 07:02:52,937 | INFO     | . Timing measurements:
[2025-11-25 02:03:29] 2025-11-25 07:02:52,937 | INFO     | . get job = 0 s
[2025-11-25 02:03:29] 2025-11-25 07:02:52,937 | INFO     | . initial setup = 8 s
[2025-11-25 02:03:29] 2025-11-25 07:02:52,937 | INFO     | . payload setup = 47 s
[2025-11-25 02:03:29] 2025-11-25 07:02:52,937 | INFO     | . stage-in = 0 s
[2025-11-25 02:03:29] 2025-11-25 07:02:52,937 | INFO     | . payload execution = 93303 s
[2025-11-25 02:03:29] 2025-11-25 07:02:52,937 | INFO     | . stage-out = 9 s
[2025-11-25 02:03:29] 2025-11-25 07:02:52,937 | INFO     | . log creation = 3 s
[2025-11-25 02:03:29] 2025-11-25 07:02:52,938 | INFO     | ..............................
[2025-11-25 02:03:29] 2025-11-25 07:02:53,427 | INFO     | time since job start (93465s) is within the limit (172800.0s)
[2025-11-25 02:03:29] 2025-11-25 07:02:53,581 | INFO     | 
[2025-11-25 02:03:29] 2025-11-25 07:02:53,581 | INFO     | job summary report
[2025-11-25 02:03:29] 2025-11-25 07:02:53,581 | INFO     | --------------------------------------------------
[2025-11-25 02:03:29] 2025-11-25 07:02:53,581 | INFO     | PanDA job id: 6895356201
[2025-11-25 02:03:29] 2025-11-25 07:02:53,581 | INFO     | task id: 47556137
[2025-11-25 02:03:29] 2025-11-25 07:02:53,581 | INFO     | errors: (none)
[2025-11-25 02:03:29] 2025-11-25 07:02:53,581 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 02:03:29] 2025-11-25 07:02:53,582 | INFO     | pilot state: finished 
[2025-11-25 02:03:29] 2025-11-25 07:02:53,582 | INFO     | transexitcode: 0
[2025-11-25 02:03:29] 2025-11-25 07:02:53,582 | INFO     | exeerrorcode: 0
[2025-11-25 02:03:29] 2025-11-25 07:02:53,582 | INFO     | exeerrordiag: 
[2025-11-25 02:03:29] 2025-11-25 07:02:53,582 | INFO     | exitcode: 0
[2025-11-25 02:03:29] 2025-11-25 07:02:53,582 | INFO     | exitmsg: OK
[2025-11-25 02:03:29] 2025-11-25 07:02:53,582 | INFO     | cpuconsumptiontime: 293729 s
[2025-11-25 02:03:29] 2025-11-25 07:02:53,582 | INFO     | nevents: 1000
[2025-11-25 02:03:29] 2025-11-25 07:02:53,582 | INFO     | neventsw: 0
[2025-11-25 02:03:29] 2025-11-25 07:02:53,582 | INFO     | pid: 87634
[2025-11-25 02:03:29] 2025-11-25 07:02:53,583 | INFO     | pgrp: 87634
[2025-11-25 02:03:29] 2025-11-25 07:02:53,583 | INFO     | corecount: 9
[2025-11-25 02:03:29] 2025-11-25 07:02:53,583 | INFO     | event service: False
[2025-11-25 02:03:29] 2025-11-25 07:02:53,583 | INFO     | sizes: {0: 2297928, 1: 2298613, 2: 2298812, 13: 2298812, 24: 2298868, 29: 2299158, 35: 2299314, 93355: 2366387, 93365: 2376172, 93366: 2376228, 93396: 2376474}
[2025-11-25 02:03:29] 2025-11-25 07:02:53,583 | INFO     | --------------------------------------------------
[2025-11-25 02:03:29] 2025-11-25 07:02:53,583 | INFO     | 
[2025-11-25 02:03:29] 2025-11-25 07:02:53,583 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-25 02:03:29] 2025-11-25 07:02:53,627 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 02:03:29] 2025-11-25 07:02:53,628 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 02:03:29] 2025-11-25 07:02:53,628 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 02:03:29] 2025-11-25 07:02:53,628 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 02:03:29] 2025-11-25 07:02:53,628 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 02:03:29] 2025-11-25 07:02:53,628 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 02:03:29] 2025-11-25 07:02:53,628 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 02:03:29] 2025-11-25 07:02:53,628 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 02:03:29] 2025-11-25 07:02:53,628 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 02:03:29] 2025-11-25 07:02:53,629 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 02:03:29] 2025-11-25 07:02:53,629 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 02:03:29] 2025-11-25 07:02:53,629 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 02:03:29] 2025-11-25 07:02:53,629 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 02:03:29] 2025-11-25 07:02:53,629 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 02:03:29] 2025-11-25 07:02:53,629 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 02:03:29] 2025-11-25 07:02:53,629 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 02:03:29] 2025-11-25 07:02:53,629 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 02:03:29] 2025-11-25 07:02:53,629 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 02:03:29] 2025-11-25 07:02:53,630 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 02:03:29] 2025-11-25 07:02:53,630 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 02:03:29] 2025-11-25 07:02:53,630 | INFO     | job 6895356201 has completed (purged errors)
[2025-11-25 02:03:29] 2025-11-25 07:02:53,630 | INFO     | overall cleanup function is called
[2025-11-25 02:03:29] 2025-11-25 07:02:54,664 | INFO     | --- collectZombieJob: --- 10, [87634]
[2025-11-25 02:03:29] 2025-11-25 07:02:54,664 | INFO     | zombie collector waiting for pid 87634
[2025-11-25 02:03:29] 2025-11-25 07:02:54,664 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 02:03:29] 2025-11-25 07:02:54,664 | INFO     | collected zombie processes
[2025-11-25 02:03:29] 2025-11-25 07:02:54,664 | INFO     | will attempt to kill all subprocesses of pid=87634
[2025-11-25 02:03:29] 2025-11-25 07:02:56,040 | INFO     | process IDs to be killed: [87634] (in reverse order)
[2025-11-25 02:03:29] 2025-11-25 07:02:56,882 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 02:03:29] 2025-11-25 07:02:56,883 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 02:03:29] 2025-11-25 07:02:56,933 | INFO     | did not find any defunct processes belonging to 87634
[2025-11-25 02:03:29] 2025-11-25 07:02:56,976 | INFO     | did not find any defunct processes belonging to 87634
[2025-11-25 02:03:29] 2025-11-25 07:02:56,981 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 02:03:29] 2025-11-25 07:02:56,981 | INFO     | ready for new job
[2025-11-25 02:03:29] 2025-11-25 07:02:56,981 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 02:03:29] 2025-11-25 07:02:56,993 | INFO     | ***************************************
[2025-11-25 02:03:29] 2025-11-25 07:02:56,993 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 02:03:29] 2025-11-25 07:02:56,994 | INFO     | ***************************************
[2025-11-25 02:03:29] 2025-11-25 07:02:56,994 | INFO     | 
[2025-11-25 02:03:29] 2025-11-25 07:02:57,000 | INFO     | architecture information:
[2025-11-25 02:03:29] 2025-11-25 07:02:57,001 | INFO     | executing command: cat /etc/os-release
[2025-11-25 02:03:29] 2025-11-25 07:02:57,048 | INFO     | cat /etc/os-release:
[2025-11-25 02:03:29] NAME="CentOS Linux"
[2025-11-25 02:03:29] VERSION="7 (Core)"
[2025-11-25 02:03:29] ID="centos"
[2025-11-25 02:03:29] ID_LIKE="rhel fedora"
[2025-11-25 02:03:29] VERSION_ID="7"
[2025-11-25 02:03:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 02:03:29] ANSI_COLOR="0;31"
[2025-11-25 02:03:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 02:03:29] HOME_URL="https://www.centos.org/"
[2025-11-25 02:03:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 02:03:29] 
[2025-11-25 02:03:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 02:03:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 02:03:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 02:03:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 02:03:29] 
[2025-11-25 02:03:29] 2025-11-25 07:02:57,048 | INFO     | ***************************************
[2025-11-25 02:03:29] 2025-11-25 07:02:57,554 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-25 02:03:29] 2025-11-25 07:02:57,609 | INFO     | sufficient remaining disk space (71581040640 B)
[2025-11-25 02:03:29] 2025-11-25 07:02:57,609 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 02:03:29] 2025-11-25 07:02:57,610 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 02:03:29] 2025-11-25 07:02:57,610 | INFO     | update_server=False
[2025-11-25 02:03:29] 2025-11-25 07:02:57,610 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 02:03:29] 2025-11-25 07:02:57,610 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 02:03:29] 2025-11-25 07:02:57,747 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:03:29] 2025-11-25 07:02:57,747 | INFO     | aborting loop
[2025-11-25 02:03:29] 2025-11-25 07:02:57,848 | INFO     | all payload control threads have been joined
[2025-11-25 02:03:29] 2025-11-25 07:02:58,192 | INFO     | all data control threads have been joined
[2025-11-25 02:03:29] 2025-11-25 07:02:58,228 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:03:29] 2025-11-25 07:02:58,617 | INFO     | [job] retrieve thread has finished
[2025-11-25 02:03:29] 2025-11-25 07:02:58,642 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 02:03:29] 2025-11-25 07:02:58,754 | INFO     | [job] job monitor thread has finished
[2025-11-25 02:03:29] 2025-11-25 07:02:58,883 | INFO     | [payload] control thread has finished
[2025-11-25 02:03:29] 2025-11-25 07:02:59,013 | INFO     | all job control threads have been joined
[2025-11-25 02:03:29] 2025-11-25 07:02:59,126 | INFO     | [payload] validate_post thread has finished
[2025-11-25 02:03:29] 2025-11-25 07:02:59,168 | INFO     | [payload] failed_post thread has finished
[2025-11-25 02:03:29] 2025-11-25 07:02:59,199 | INFO     | [data] control thread has finished
[2025-11-25 02:03:29] 2025-11-25 07:02:59,241 | INFO     | [job] queue monitor thread has finished
[2025-11-25 02:03:29] 2025-11-25 07:02:59,545 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 02:03:29] 2025-11-25 07:02:59,605 | INFO     | [job] validate thread has finished
[2025-11-25 02:03:29] 2025-11-25 07:02:59,621 | INFO     | [data] copytool_out thread has finished
[2025-11-25 02:03:29] 2025-11-25 07:02:59,811 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 02:03:29] 2025-11-25 07:02:59,883 | INFO     | [data] copytool_in thread has finished
[2025-11-25 02:03:29] 2025-11-25 07:02:59,883 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 02:03:29] 2025-11-25 07:03:00,022 | INFO     | [job] control thread has finished
[2025-11-25 02:03:29] 2025-11-25 07:03:01,038 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 02:03:29] 2025-11-25 07:03:02,724 | INFO     | [monitor] cgroup control has ended
[2025-11-25 02:03:29] 2025-11-25 07:03:05,074 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 02:03:29] 2025-11-25 07:03:05,650 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140175436257088)>', '<ExcThread(monitor, started 140174931498752)>']
[2025-11-25 02:03:29] 2025-11-25 07:03:10,675 | INFO     | all workflow threads have been joined
[2025-11-25 02:03:29] 2025-11-25 07:03:10,675 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 02:03:29] 2025-11-25 07:03:10,675 | INFO     | traces error code: 0
[2025-11-25 02:03:29] 2025-11-25 07:03:10,686 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 02:03:29] 2025-11-25 07:03:28,446 | INFO     | PID=77670 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 02:03:29] 2025-11-25 07:03:28,447 | INFO     | .. there are 43 such processes running
[2025-11-25 02:03:29] 2025-11-25 07:03:28,452 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 02:03:29] 2025-11-25 07:03:28,452 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 02:03:29] 2025-11-25 07:03:28,452 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 02:03:29] 2025-11-25 07:03:28,452 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 02:03:29] 2025-11-25 07:03:28,452 | CRITICAL | thread 'MainThread' is not alive
[2025-11-25 02:03:29] 2025-11-25 07:03:28,452 | INFO     | [monitor] control thread has ended
[2025-11-25 02:03:29] 2025-11-25 07:03:28,678 [wrapper] ==== pilot stdout END ====
[2025-11-25 02:03:29] 2025-11-25 07:03:28,681 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 02:03:29] 2025-11-25 07:03:28,683 [wrapper] pilotpid: 77670
[2025-11-25 02:03:29] 2025-11-25 07:03:28,686 [wrapper] Pilot exit status: 0
[2025-11-25 02:03:29] 2025-11-25 07:03:28,812 [wrapper] pandaids: 6895356201
[2025-11-25 02:03:29] 2025-11-25 07:03:29,034 [wrapper] cleanup supervisor_pilot 1180438 77671
[2025-11-25 02:03:29] 2025-11-25 07:03:29,039 [wrapper] Test setup, not cleaning
[2025-11-25 02:03:29] 2025-11-25 07:03:29,042 [wrapper] apfmon messages muted
[2025-11-25 02:03:29] 2025-11-25 07:03:29,044 [wrapper] ==== wrapper stdout END ====
[2025-11-25 02:03:29] 2025-11-25 07:03:29,049 [wrapper] ==== wrapper stderr END ====
[2025-11-25 02:03:29]  *** Error codes and diagnostics ***
[2025-11-25 02:03:29]     "exeErrorCode": 0,
[2025-11-25 02:03:29]     "exeErrorDiag": "",
[2025-11-25 02:03:29]     "pilotErrorCode": 0,
[2025-11-25 02:03:29]     "pilotErrorDiag": "",
[2025-11-25 02:03:29]  *** Listing of results directory ***
[2025-11-25 02:03:29] total 1320012
[2025-11-25 02:03:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 05:16 pilot3.tar.gz
[2025-11-25 02:03:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 05:32 queuedata.json
[2025-11-25 02:03:29] -rwx------. 1 boincer umatlas     36292 Nov 23 05:34 runpilot2-wrapper.sh
[2025-11-25 02:03:29] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 02:03:29] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:03 run_atlas
[2025-11-25 02:03:29] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:03 job.xml
[2025-11-25 02:03:29] -rw-r--r--. 2 boincer umatlas 408013443 Nov 24 00:03 EVNT.47483658._000691.pool.root.1
[2025-11-25 02:03:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:03 start_atlas.sh
[2025-11-25 02:03:29] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:03 shared
[2025-11-25 02:03:29] -rw-r--r--. 2 boincer umatlas    590099 Nov 24 00:03 input.tar.gz
[2025-11-25 02:03:29] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:03 boinc_lockfile
[2025-11-25 02:03:29] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 00:03 pandaJob.out
[2025-11-25 02:03:29] -rw-------. 1 boincer umatlas        57 Nov 24 00:03 setup.sh.local
[2025-11-25 02:03:29] -rw-------. 1 boincer umatlas    989786 Nov 24 00:05 agis_schedconf.cvmfs.json
[2025-11-25 02:03:29] drwx------. 5 boincer umatlas      4096 Nov 24 00:05 pilot3
[2025-11-25 02:03:29] -rw-r--r--. 1 boincer umatlas       533 Nov 25 01:21 boinc_task_state.xml
[2025-11-25 02:03:29] -rw-r--r--. 1 boincer umatlas      6659 Nov 25 02:00 init_data.xml
[2025-11-25 02:03:29] -rw-------. 1 boincer umatlas 911077214 Nov 25 02:00 HITS.47556137._006862.pool.root.1
[2025-11-25 02:03:29] -rw-------. 1 boincer umatlas      1070 Nov 25 02:02 memory_monitor_summary.json
[2025-11-25 02:03:29] -rw-------. 1 boincer umatlas   1516227 Nov 25 02:02 agis_ddmendpoints.agis.ALL.json
[2025-11-25 02:03:29] -rw-------. 1 boincer umatlas   2644946 Nov 25 02:02 log.47556137._006862.job.log.tgz.1
[2025-11-25 02:03:29] -rw-------. 1 boincer umatlas      7968 Nov 25 02:02 heartbeat.json
[2025-11-25 02:03:29] -rw-r--r--. 1 boincer umatlas        29 Nov 25 02:03 wrapper_checkpoint.txt
[2025-11-25 02:03:29] -rw-------. 1 boincer umatlas        95 Nov 25 02:03 pilot_heartbeat.json
[2025-11-25 02:03:29] -rw-------. 1 boincer umatlas       891 Nov 25 02:03 pilotlog.txt
[2025-11-25 02:03:29] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 02:03 boinc_mmap_file
[2025-11-25 02:03:29] -rw-------. 1 boincer umatlas  11698314 Nov 25 02:03 log.47556137._006862.job.log.1
[2025-11-25 02:03:29] -rw-------. 1 boincer umatlas       353 Nov 25 02:03 output.list
[2025-11-25 02:03:29] -rw-r--r--. 1 boincer umatlas       620 Nov 25 02:03 runtime_log
[2025-11-25 02:03:29] -rw-------. 1 boincer umatlas  14366720 Nov 25 02:03 result.tar.gz
[2025-11-25 02:03:29] -rw-r--r--. 1 boincer umatlas      9328 Nov 25 02:03 runtime_log.err
[2025-11-25 02:03:29] -rw-------. 1 boincer umatlas       662 Nov 25 02:03 MgXMDm3aMh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmynKKDmTR2FGo.diag
[2025-11-25 02:03:29] -rw-r--r--. 1 boincer umatlas     21820 Nov 25 02:03 stderr.txt
[2025-11-25 02:03:29] HITS file was successfully produced:
[2025-11-25 02:03:29] -rw-------. 1 boincer umatlas 911077214 Nov 25 02:00 shared/HITS.pool.root.1
[2025-11-25 02:03:29]  *** Contents of shared directory: ***
[2025-11-25 02:03:29] total 1302812
[2025-11-25 02:03:29] -rw-r--r--. 2 boincer umatlas 408013443 Nov 24 00:03 ATLAS.root_0
[2025-11-25 02:03:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:03 start_atlas.sh
[2025-11-25 02:03:29] -rw-r--r--. 2 boincer umatlas    590099 Nov 24 00:03 input.tar.gz
[2025-11-25 02:03:29] -rw-------. 1 boincer umatlas 911077214 Nov 25 02:00 HITS.pool.root.1
[2025-11-25 02:03:29] -rw-------. 1 boincer umatlas  14366720 Nov 25 02:03 result.tar.gz
02:03:31 (70503): run_atlas exited; CPU time 296584.993745
02:03:31 (70503): called boinc_finish(0)

</stderr_txt>
]]>

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