Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:36:01 (1823659): wrapper (7.7.26015): starting
09:36:01 (1823659): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 09:36:01] Arguments: --nthreads 8
[2025-11-24 09:36:01] Threads: 8
[2025-11-24 09:36:01] Checking for CVMFS
[2025-11-24 09:36:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 09:36:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 09:36:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 09:36:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 09:36:03] 2.13.3.0 9955 27252 302868 153248 1 94 27096773 32935937 28911 16776704 0 161239986 99.792 87581030 33161 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 09:36:03] CVMFS is ok
[2025-11-24 09:36:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 09:36:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 09:36:03] Further information can be found at the LHC@home message board.
[2025-11-24 09:36:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 09:36:03] Checking for apptainer binary...
[2025-11-24 09:36:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 09:36:03] Running /usr/bin/apptainer --version
[2025-11-24 09:36:04] apptainer version 1.4.4-1.el9
[2025-11-24 09:36:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 09:36:05] c-5-1.aglt2.org
[2025-11-24 09:36:05] apptainer works
[2025-11-24 09:36:05] Set ATHENA_PROC_NUMBER=8
[2025-11-24 09:36:05] Set ATHENA_CORE_NUMBER=8
[2025-11-24 09:36:05] Starting ATLAS job with PandaID=6895356199
[2025-11-24 09:36:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:41:46]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:41:47] 2025-11-25 17:40:45,804 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:41:47] 2025-11-25 17:40:47,416 | INFO     | time since job start (97441s) is within the limit (172800.0s)
[2025-11-25 12:41:47] 2025-11-25 17:40:48,311 | INFO     | monitor loop #6244: job 0:6895356199 is in state 'finished'
[2025-11-25 12:41:47] 2025-11-25 17:40:48,311 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:41:47] 2025-11-25 17:40:49,468 | INFO     | time since job start (97443s) is within the limit (172800.0s)
[2025-11-25 12:41:47] 2025-11-25 17:40:50,815 | INFO     | monitor loop #6245: job 0:6895356199 is in state 'finished'
[2025-11-25 12:41:47] 2025-11-25 17:40:50,815 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:41:47] 2025-11-25 17:40:51,761 | INFO     | PID=1828716 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 12:41:47] 2025-11-25 17:40:51,761 | INFO     | .. there are 43 such processes running
[2025-11-25 12:41:47] 2025-11-25 17:40:52,427 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 12:41:47] 2025-11-25 17:40:52,433 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0390500000003
[2025-11-25 12:41:47] 2025-11-25 17:40:52,450 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895356199/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 12:41:47] 2025-11-25 17:40:52,451 | INFO     | extracted standard info from prmon json
[2025-11-25 12:41:47] 2025-11-25 17:40:52,451 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 12:41:47] 2025-11-25 17:40:52,451 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 12:41:47] 2025-11-25 17:40:52,479 | INFO     | fitting pss+swap vs Time
[2025-11-25 12:41:47] 2025-11-25 17:40:52,481 | INFO     | sum of square deviations: 1260610853206.317
[2025-11-25 12:41:47] 2025-11-25 17:40:52,569 | INFO     | sum of deviations: 5712441745302.673
[2025-11-25 12:41:47] 2025-11-25 17:40:52,569 | INFO     | mean x: 1764043757.4793234
[2025-11-25 12:41:47] 2025-11-25 17:40:52,570 | INFO     | mean y: 2946140.201754386
[2025-11-25 12:41:47] 2025-11-25 17:40:52,570 | INFO     | intersect: -7990795286.928595
[2025-11-25 12:41:47] 2025-11-25 17:40:52,576 | INFO     | chi2: 12.269102976980722
[2025-11-25 12:41:47] 2025-11-25 17:40:52,578 | INFO     | sum of square deviations: 1248800671261.5078
[2025-11-25 12:41:47] 2025-11-25 17:40:52,721 | INFO     | sum of deviations: 6239559080173.456
[2025-11-25 12:41:47] 2025-11-25 17:40:52,722 | INFO     | mean x: 1764043604.982401
[2025-11-25 12:41:47] 2025-11-25 17:40:52,722 | INFO     | mean y: 2952945.5160276555
[2025-11-25 12:41:47] 2025-11-25 17:40:52,722 | INFO     | intersect: -8810987138.429478
[2025-11-25 12:41:47] 2025-11-25 17:40:52,728 | INFO     | chi2: 9.279297732414587
[2025-11-25 12:41:47] 2025-11-25 17:40:52,728 | INFO     | current chi2=9.279297732414587 (change=24.36857242274031 %)
[2025-11-25 12:41:47] 2025-11-25 17:40:52,728 | INFO     | right removable region: 1590
[2025-11-25 12:41:47] 2025-11-25 17:40:52,731 | INFO     | sum of square deviations: 1248799717831.507
[2025-11-25 12:41:47] 2025-11-25 17:40:52,772 | INFO     | time since job start (97446s) is within the limit (172800.0s)
[2025-11-25 12:41:47] 2025-11-25 17:40:52,854 | INFO     | sum of deviations: 5111160279402.238
[2025-11-25 12:41:47] 2025-11-25 17:40:52,854 | INFO     | mean x: 1764043909.982401
[2025-11-25 12:41:47] 2025-11-25 17:40:52,854 | INFO     | mean y: 2953901.972972973
[2025-11-25 12:41:47] 2025-11-25 17:40:52,854 | INFO     | intersect: -7217027841.360493
[2025-11-25 12:41:47] 2025-11-25 17:40:52,856 | INFO     | chi2: 8.811655015469189
[2025-11-25 12:41:47] 2025-11-25 17:40:52,861 | INFO     | current chi2=8.811655015469189 (change=28.180120160360488 %)
[2025-11-25 12:41:47] 2025-11-25 17:40:52,863 | INFO     | sum of square deviations: 1237062874634.0774
[2025-11-25 12:41:47] 2025-11-25 17:40:52,981 | INFO     | sum of deviations: 4886679871012.886
[2025-11-25 12:41:47] 2025-11-25 17:40:52,981 | INFO     | mean x: 1764044062.4836066
[2025-11-25 12:41:47] 2025-11-25 17:40:52,981 | INFO     | mean y: 2956816.26481715
[2025-11-25 12:41:47] 2025-11-25 17:40:52,981 | INFO     | intersect: -6965418670.929659
[2025-11-25 12:41:47] 2025-11-25 17:40:52,988 | INFO     | chi2: 8.330022647833664
[2025-11-25 12:41:47] 2025-11-25 17:40:52,988 | INFO     | current chi2=8.330022647833664 (change=5.4658559236602136 %)
[2025-11-25 12:41:47] 2025-11-25 17:40:52,988 | INFO     | left removable region: 20
[2025-11-25 12:41:47] 2025-11-25 17:40:52,994 | INFO     | sum of square deviations: 1200001411378.036
[2025-11-25 12:41:47] 2025-11-25 17:40:53,120 | INFO     | sum of deviations: 5313030320182.394
[2025-11-25 12:41:47] 2025-11-25 17:40:53,121 | INFO     | mean x: 1764044184.4828026
[2025-11-25 12:41:47] 2025-11-25 17:40:53,121 | INFO     | mean y: 2967721.3477707007
[2025-11-25 12:41:47] 2025-11-25 17:40:53,121 | INFO     | intersect: -7807373291.114559
[2025-11-25 12:41:47] 2025-11-25 17:40:53,127 | INFO     | chi2: 4.709331467258002
[2025-11-25 12:41:47] 2025-11-25 17:40:53,127 | INFO     | current memory leak: 4.43 B/s (using 1570 data points, chi2=4.71)
[2025-11-25 12:41:47] 2025-11-25 17:40:53,129 | INFO     | could have reported an average CPU frequency of 2600 MHz (57 samples)
[2025-11-25 12:41:47] 2025-11-25 17:40:53,129 | INFO     | ..............................
[2025-11-25 12:41:47] 2025-11-25 17:40:53,129 | INFO     | . Timing measurements:
[2025-11-25 12:41:47] 2025-11-25 17:40:53,129 | INFO     | . get job = 0 s
[2025-11-25 12:41:47] 2025-11-25 17:40:53,129 | INFO     | . initial setup = 4 s
[2025-11-25 12:41:47] 2025-11-25 17:40:53,129 | INFO     | . payload setup = 32 s
[2025-11-25 12:41:47] 2025-11-25 17:40:53,129 | INFO     | . stage-in = 0 s
[2025-11-25 12:41:47] 2025-11-25 17:40:53,129 | INFO     | . payload execution = 97329 s
[2025-11-25 12:41:47] 2025-11-25 17:40:53,129 | INFO     | . stage-out = 8 s
[2025-11-25 12:41:47] 2025-11-25 17:40:53,130 | INFO     | . log creation = 2 s
[2025-11-25 12:41:47] 2025-11-25 17:40:53,130 | INFO     | ..............................
[2025-11-25 12:41:47] 2025-11-25 17:40:53,338 | INFO     | 
[2025-11-25 12:41:47] 2025-11-25 17:40:53,338 | INFO     | job summary report
[2025-11-25 12:41:47] 2025-11-25 17:40:53,339 | INFO     | --------------------------------------------------
[2025-11-25 12:41:47] 2025-11-25 17:40:53,339 | INFO     | PanDA job id: 6895356199
[2025-11-25 12:41:47] 2025-11-25 17:40:53,339 | INFO     | task id: 47556137
[2025-11-25 12:41:47] 2025-11-25 17:40:53,339 | INFO     | errors: (none)
[2025-11-25 12:41:47] 2025-11-25 17:40:53,339 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 12:41:47] 2025-11-25 17:40:53,339 | INFO     | pilot state: finished 
[2025-11-25 12:41:47] 2025-11-25 17:40:53,339 | INFO     | transexitcode: 0
[2025-11-25 12:41:47] 2025-11-25 17:40:53,339 | INFO     | exeerrorcode: 0
[2025-11-25 12:41:47] 2025-11-25 17:40:53,339 | INFO     | exeerrordiag: 
[2025-11-25 12:41:47] 2025-11-25 17:40:53,339 | INFO     | exitcode: 0
[2025-11-25 12:41:47] 2025-11-25 17:40:53,340 | INFO     | exitmsg: OK
[2025-11-25 12:41:47] 2025-11-25 17:40:53,340 | INFO     | cpuconsumptiontime: 307898 s
[2025-11-25 12:41:47] 2025-11-25 17:40:53,340 | INFO     | nevents: 1000
[2025-11-25 12:41:47] 2025-11-25 17:40:53,340 | INFO     | neventsw: 0
[2025-11-25 12:41:47] 2025-11-25 17:40:53,340 | INFO     | pid: 1836443
[2025-11-25 12:41:47] 2025-11-25 17:40:53,340 | INFO     | pgrp: 1836443
[2025-11-25 12:41:47] 2025-11-25 17:40:53,340 | INFO     | corecount: 8
[2025-11-25 12:41:47] 2025-11-25 17:40:53,340 | INFO     | event service: False
[2025-11-25 12:41:47] 2025-11-25 17:40:53,340 | INFO     | sizes: {0: 2284088, 1: 2284287, 12: 2284287, 19: 2284577, 23: 2284605, 97363: 2355744, 97374: 2364743, 97376: 2364799, 97403: 2365045}
[2025-11-25 12:41:47] 2025-11-25 17:40:53,341 | INFO     | --------------------------------------------------
[2025-11-25 12:41:47] 2025-11-25 17:40:53,341 | INFO     | 
[2025-11-25 12:41:47] 2025-11-25 17:40:53,341 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 12:41:47] 2025-11-25 17:40:53,384 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:40:53,384 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:40:53,385 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:40:53,385 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:40:53,385 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:40:53,385 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:40:53,385 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:40:53,385 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:40:53,385 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:40:53,385 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:40:53,385 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:40:53,386 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:40:53,386 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:40:53,386 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:40:53,386 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:40:53,386 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:40:53,386 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:40:53,386 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 12:41:47] 2025-11-25 17:40:53,386 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:40:53,386 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 12:41:47] 2025-11-25 17:40:53,387 | INFO     | job 6895356199 has completed (purged errors)
[2025-11-25 12:41:47] 2025-11-25 17:40:53,387 | INFO     | overall cleanup function is called
[2025-11-25 12:41:47] 2025-11-25 17:40:54,421 | INFO     | --- collectZombieJob: --- 10, [1836443]
[2025-11-25 12:41:47] 2025-11-25 17:40:54,421 | INFO     | zombie collector waiting for pid 1836443
[2025-11-25 12:41:47] 2025-11-25 17:40:54,421 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 12:41:47] 2025-11-25 17:40:54,421 | INFO     | collected zombie processes
[2025-11-25 12:41:47] 2025-11-25 17:40:54,421 | INFO     | will attempt to kill all subprocesses of pid=1836443
[2025-11-25 12:41:47] 2025-11-25 17:40:55,373 | INFO     | process IDs to be killed: [1836443] (in reverse order)
[2025-11-25 12:41:47] 2025-11-25 17:40:55,783 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 12:41:47] 2025-11-25 17:40:55,784 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 12:41:47] 2025-11-25 17:40:55,822 | INFO     | did not find any defunct processes belonging to 1836443
[2025-11-25 12:41:47] 2025-11-25 17:40:55,860 | INFO     | did not find any defunct processes belonging to 1836443
[2025-11-25 12:41:47] 2025-11-25 17:40:55,865 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 12:41:47] 2025-11-25 17:40:55,865 | INFO     | ready for new job
[2025-11-25 12:41:47] 2025-11-25 17:40:55,865 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 12:41:47] 2025-11-25 17:40:55,879 | INFO     | ***************************************
[2025-11-25 12:41:47] 2025-11-25 17:40:55,879 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 12:41:47] 2025-11-25 17:40:55,879 | INFO     | ***************************************
[2025-11-25 12:41:47] 2025-11-25 17:40:55,879 | INFO     | 
[2025-11-25 12:41:47] 2025-11-25 17:40:55,881 | INFO     | architecture information:
[2025-11-25 12:41:47] 2025-11-25 17:40:55,888 | INFO     | executing command: cat /etc/os-release
[2025-11-25 12:41:47] 2025-11-25 17:40:56,045 | INFO     | cat /etc/os-release:
[2025-11-25 12:41:47] NAME="CentOS Linux"
[2025-11-25 12:41:47] VERSION="7 (Core)"
[2025-11-25 12:41:47] ID="centos"
[2025-11-25 12:41:47] ID_LIKE="rhel fedora"
[2025-11-25 12:41:47] VERSION_ID="7"
[2025-11-25 12:41:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 12:41:47] ANSI_COLOR="0;31"
[2025-11-25 12:41:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 12:41:47] HOME_URL="https://www.centos.org/"
[2025-11-25 12:41:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 12:41:47] 
[2025-11-25 12:41:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 12:41:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 12:41:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 12:41:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 12:41:47] 
[2025-11-25 12:41:47] 2025-11-25 17:40:56,046 | INFO     | ***************************************
[2025-11-25 12:41:47] 2025-11-25 17:40:56,550 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 12:41:47] 2025-11-25 17:40:56,595 | INFO     | sufficient remaining disk space (71956430848 B)
[2025-11-25 12:41:47] 2025-11-25 17:40:56,595 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 12:41:47] 2025-11-25 17:40:56,595 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:41:47] 2025-11-25 17:40:56,595 | INFO     | update_server=False
[2025-11-25 12:41:47] 2025-11-25 17:40:56,595 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:41:47] 2025-11-25 17:40:56,745 | INFO     | all job control threads have been joined
[2025-11-25 12:41:47] 2025-11-25 17:40:56,820 | INFO     | all data control threads have been joined
[2025-11-25 12:41:47] 2025-11-25 17:40:56,858 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:41:47] 2025-11-25 17:40:56,858 | INFO     | aborting loop
[2025-11-25 12:41:47] 2025-11-25 17:40:57,242 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:41:47] 2025-11-25 17:40:57,414 | INFO     | all payload control threads have been joined
[2025-11-25 12:41:47] 2025-11-25 17:40:57,602 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:40:57,610 | INFO     | [job] validate thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:40:57,751 | INFO     | [job] control thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:40:57,826 | INFO     | [data] control thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:40:57,840 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:40:57,863 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:40:57,944 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:40:58,082 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:40:58,087 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:40:58,377 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:41:47] 2025-11-25 17:40:58,377 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:40:58,421 | INFO     | [payload] control thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:40:58,599 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:40:58,706 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:40:59,249 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:40:59,383 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:40:59,948 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:41:47] 2025-11-25 17:41:04,000 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:41:47] 2025-11-25 17:41:27,076 | INFO     | PID=1828716 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 12:41:47] 2025-11-25 17:41:27,077 | INFO     | .. there are 43 such processes running
[2025-11-25 12:41:47] 2025-11-25 17:41:27,078 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:41:47] 2025-11-25 17:41:27,078 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:41:47] 2025-11-25 17:41:27,078 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:41:47] 2025-11-25 17:41:39,041 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:41:47] 2025-11-25 17:41:40,398 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139735105238848)>', '<ExcThread(monitor, started 139734462486272)>']
[2025-11-25 12:41:47] 2025-11-25 17:41:41,180 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:41:47] 2025-11-25 17:41:41,180 | INFO     | [monitor] control thread has ended
[2025-11-25 12:41:47] 2025-11-25 17:41:45,423 | INFO     | all workflow threads have been joined
[2025-11-25 12:41:47] 2025-11-25 17:41:45,423 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:41:47] 2025-11-25 17:41:45,424 | INFO     | traces error code: 0
[2025-11-25 12:41:47] 2025-11-25 17:41:45,424 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:41:47] 2025-11-25 17:41:46,063 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:41:47] 2025-11-25 17:41:46,102 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:41:47] 2025-11-25 17:41:46,152 [wrapper] pilotpid: 1828716
[2025-11-25 12:41:47] 2025-11-25 17:41:46,158 [wrapper] Pilot exit status: 0
[2025-11-25 12:41:47] 2025-11-25 17:41:46,176 [wrapper] pandaids: 6895356199
[2025-11-25 12:41:47] 2025-11-25 17:41:46,276 [wrapper] cleanup supervisor_pilot 3313890 1828717
[2025-11-25 12:41:47] 2025-11-25 17:41:46,285 [wrapper] Test setup, not cleaning
[2025-11-25 12:41:47] 2025-11-25 17:41:46,288 [wrapper] apfmon messages muted
[2025-11-25 12:41:47] 2025-11-25 17:41:46,296 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:41:47] 2025-11-25 17:41:46,332 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:41:47]  *** Error codes and diagnostics ***
[2025-11-25 12:41:47]     "exeErrorCode": 0,
[2025-11-25 12:41:47]     "exeErrorDiag": "",
[2025-11-25 12:41:47]     "pilotErrorCode": 0,
[2025-11-25 12:41:47]     "pilotErrorDiag": "",
[2025-11-25 12:41:47]  *** Listing of results directory ***
[2025-11-25 12:41:47] total 1340132
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 05:16 pilot3.tar.gz
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 05:28 queuedata.json
[2025-11-25 12:41:47] -rwx------. 1 boincer umatlas     36292 Nov 23 05:30 runpilot2-wrapper.sh
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas       100 Nov 24 09:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:41:47] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 09:36 run_atlas
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas       105 Nov 24 09:36 job.xml
[2025-11-25 12:41:47] -rw-r--r--. 2 boincer umatlas 410640263 Nov 24 09:36 EVNT.47483658._000690.pool.root.1
[2025-11-25 12:41:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 09:36 start_atlas.sh
[2025-11-25 12:41:47] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 09:36 shared
[2025-11-25 12:41:47] -rw-r--r--. 2 boincer umatlas    590101 Nov 24 09:36 input.tar.gz
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas         0 Nov 24 09:36 boinc_lockfile
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 09:36 pandaJob.out
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas        57 Nov 24 09:36 setup.sh.local
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas    988283 Nov 24 09:36 agis_schedconf.cvmfs.json
[2025-11-25 12:41:47] drwx------. 5 boincer umatlas      4096 Nov 24 09:36 pilot3
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas       533 Nov 25 12:19 boinc_task_state.xml
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas 926977588 Nov 25 12:39 HITS.47556137._006860.pool.root.1
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas      1066 Nov 25 12:40 memory_monitor_summary.json
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas   1516240 Nov 25 12:40 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas   2605186 Nov 25 12:40 log.47556137._006860.job.log.tgz.1
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas      6659 Nov 25 12:40 init_data.xml
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas      8625 Nov 25 12:40 heartbeat.json
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas        95 Nov 25 12:41 pilot_heartbeat.json
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas      4824 Nov 25 12:41 pilotlog.txt
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas  12778290 Nov 25 12:41 log.47556137._006860.job.log.1
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 12:41 boinc_mmap_file
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas        29 Nov 25 12:41 wrapper_checkpoint.txt
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas       353 Nov 25 12:41 output.list
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas       620 Nov 25 12:41 runtime_log
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas  15400960 Nov 25 12:41 result.tar.gz
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas      9328 Nov 25 12:41 runtime_log.err
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas       660 Nov 25 12:41 PkOODm4XMh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDVIKDmOUkTgn.diag
[2025-11-25 12:41:47] -rw-r--r--. 1 boincer umatlas     21641 Nov 25 12:41 stderr.txt
[2025-11-25 12:41:47] HITS file was successfully produced:
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas 926977588 Nov 25 12:39 shared/HITS.pool.root.1
[2025-11-25 12:41:47]  *** Contents of shared directory: ***
[2025-11-25 12:41:47] total 1321908
[2025-11-25 12:41:47] -rw-r--r--. 2 boincer umatlas 410640263 Nov 24 09:36 ATLAS.root_0
[2025-11-25 12:41:47] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 09:36 start_atlas.sh
[2025-11-25 12:41:47] -rw-r--r--. 2 boincer umatlas    590101 Nov 24 09:36 input.tar.gz
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas 926977588 Nov 25 12:39 HITS.pool.root.1
[2025-11-25 12:41:47] -rw-------. 1 boincer umatlas  15400960 Nov 25 12:41 result.tar.gz
12:42:07 (1823659): run_atlas exited; CPU time 311260.136074
12:42:07 (1823659): called boinc_finish(0)

</stderr_txt>
]]>

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