Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:01 (990736): wrapper (7.7.26015): starting
00:04:01 (990736): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 00:04:01] Arguments: --nthreads 12
[2025-11-24 00:04:01] Threads: 12
[2025-11-24 00:04:01] Checking for CVMFS
[2025-11-24 00:04:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:04:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:04:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:04:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:04:03] 2.13.2.0 8445 32015 222280 153233 2 364 34677308 40960000 20937 16776704 0 64849958 99.787 32926276 37084 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:04:03] CVMFS is ok
[2025-11-24 00:04:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:04:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:04:03] Further information can be found at the LHC@home message board.
[2025-11-24 00:04:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:04:03] Checking for apptainer binary...
[2025-11-24 00:04:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:04:03] Running /usr/bin/apptainer --version
[2025-11-24 00:04:03] apptainer version 1.4.4-1.el9
[2025-11-24 00:04:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:04:04] c-212-2.aglt2.org
[2025-11-24 00:04:04] apptainer works
[2025-11-24 00:04:04] Set ATHENA_PROC_NUMBER=12
[2025-11-24 00:04:04] Set ATHENA_CORE_NUMBER=12
[2025-11-24 00:04:05] Starting ATLAS job with PandaID=6891587802
[2025-11-24 00:04:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 02:29:51]  *** The last 200 lines of the pilot log: ***
[2025-11-25 02:29:51] 2025-11-25 07:29:01,840 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:29:51] 2025-11-25 07:29:02,077 | INFO     | time since job start (95004s) is within the limit (172800.0s)
[2025-11-25 02:29:51] 2025-11-25 07:29:04,097 | INFO     | time since job start (95006s) is within the limit (172800.0s)
[2025-11-25 02:29:51] 2025-11-25 07:29:04,345 | INFO     | monitor loop #5540: job 0:6891587802 is in state 'finished'
[2025-11-25 02:29:51] 2025-11-25 07:29:04,345 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:29:51] 2025-11-25 07:29:06,104 | INFO     | time since job start (95008s) is within the limit (172800.0s)
[2025-11-25 02:29:51] 2025-11-25 07:29:06,850 | INFO     | monitor loop #5541: job 0:6891587802 is in state 'finished'
[2025-11-25 02:29:51] 2025-11-25 07:29:06,850 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:29:51] 2025-11-25 07:29:08,111 | INFO     | time since job start (95010s) is within the limit (172800.0s)
[2025-11-25 02:29:51] 2025-11-25 07:29:09,356 | INFO     | monitor loop #5542: job 0:6891587802 is in state 'finished'
[2025-11-25 02:29:51] 2025-11-25 07:29:09,356 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:29:51] 2025-11-25 07:29:10,120 | INFO     | time since job start (95012s) is within the limit (172800.0s)
[2025-11-25 02:29:51] 2025-11-25 07:29:11,863 | INFO     | monitor loop #5543: job 0:6891587802 is in state 'finished'
[2025-11-25 02:29:51] 2025-11-25 07:29:11,863 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:29:51] 2025-11-25 07:29:12,127 | INFO     | time since job start (95014s) is within the limit (172800.0s)
[2025-11-25 02:29:51] 2025-11-25 07:29:13,005 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 02:29:51] 2025-11-25 07:29:13,030 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3028.1470520833336
[2025-11-25 02:29:51] 2025-11-25 07:29:13,144 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6891587802/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 02:29:51] 2025-11-25 07:29:13,146 | INFO     | extracted standard info from prmon json
[2025-11-25 02:29:51] 2025-11-25 07:29:13,146 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 02:29:51] 2025-11-25 07:29:13,146 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 02:29:51] 2025-11-25 07:29:13,275 | INFO     | fitting pss+swap vs Time
[2025-11-25 02:29:51] 2025-11-25 07:29:13,294 | INFO     | sum of square deviations: 1165910242195.6292
[2025-11-25 02:29:51] 2025-11-25 07:29:13,566 | INFO     | sum of deviations: 11097784895250.883
[2025-11-25 02:29:51] 2025-11-25 07:29:13,566 | INFO     | mean x: 1764008314.015434
[2025-11-25 02:29:51] 2025-11-25 07:29:13,566 | INFO     | mean y: 3457306.421221865
[2025-11-25 02:29:51] 2025-11-25 07:29:13,566 | INFO     | intersect: -16787359099.403511
[2025-11-25 02:29:51] 2025-11-25 07:29:13,567 | INFO     | chi2: 29.876321341506255
[2025-11-25 02:29:51] 2025-11-25 07:29:13,591 | INFO     | sum of square deviations: 1154700959772.518
[2025-11-25 02:29:51] 2025-11-25 07:29:13,850 | INFO     | sum of deviations: 11788730790068.43
[2025-11-25 02:29:51] 2025-11-25 07:29:13,851 | INFO     | mean x: 1764008161.5251613
[2025-11-25 02:29:51] 2025-11-25 07:29:13,851 | INFO     | mean y: 3466704.001935484
[2025-11-25 02:29:51] 2025-11-25 07:29:13,851 | INFO     | intersect: -18005886411.80432
[2025-11-25 02:29:51] 2025-11-25 07:29:13,852 | INFO     | chi2: 26.092078750194652
[2025-11-25 02:29:51] 2025-11-25 07:29:13,852 | INFO     | current chi2=26.092078750194652 (change=12.666360587219522 %)
[2025-11-25 02:29:51] 2025-11-25 07:29:13,852 | INFO     | right removable region: 1549
[2025-11-25 02:29:51] 2025-11-25 07:29:13,869 | INFO     | sum of square deviations: 1154698099482.5176
[2025-11-25 02:29:51] 2025-11-25 07:29:14,061 | INFO     | sum of deviations: 10290284445801.59
[2025-11-25 02:29:51] 2025-11-25 07:29:14,061 | INFO     | mean x: 1764008466.5251613
[2025-11-25 02:29:51] 2025-11-25 07:29:14,061 | INFO     | mean y: 3468289.9083870966
[2025-11-25 02:29:51] 2025-11-25 07:29:14,061 | INFO     | intersect: -15716786981.561392
[2025-11-25 02:29:51] 2025-11-25 07:29:14,078 | INFO     | chi2: 24.829838306038113
[2025-11-25 02:29:51] 2025-11-25 07:29:14,078 | INFO     | current chi2=24.829838306038113 (change=16.891246341152513 %)
[2025-11-25 02:29:51] 2025-11-25 07:29:14,078 | INFO     | left removable region: 10
[2025-11-25 02:29:51] 2025-11-25 07:29:14,080 | INFO     | sum of square deviations: 1130288262612.6301
[2025-11-25 02:29:51] 2025-11-25 07:29:14,141 | INFO     | time since job start (95016s) is within the limit (172800.0s)
[2025-11-25 02:29:51] 2025-11-25 07:29:14,370 | INFO     | sum of deviations: 10345119931489.984
[2025-11-25 02:29:51] 2025-11-25 07:29:14,370 | INFO     | mean x: 1764008436.0467837
[2025-11-25 02:29:51] 2025-11-25 07:29:14,370 | INFO     | mean y: 3489889.8752436647
[2025-11-25 02:29:51] 2025-11-25 07:29:14,370 | INFO     | intersect: -16141841734.539114
[2025-11-25 02:29:51] 2025-11-25 07:29:14,389 | INFO     | chi2: 16.057837685701127
[2025-11-25 02:29:51] 2025-11-25 07:29:14,389 | INFO     | current memory leak: 9.15 B/s (using 1539 data points, chi2=16.06)
[2025-11-25 02:29:51] 2025-11-25 07:29:14,391 | INFO     | could have reported an average CPU frequency of 3084 MHz (55 samples)
[2025-11-25 02:29:51] 2025-11-25 07:29:14,391 | INFO     | ..............................
[2025-11-25 02:29:51] 2025-11-25 07:29:14,391 | INFO     | . Timing measurements:
[2025-11-25 02:29:51] 2025-11-25 07:29:14,391 | INFO     | . get job = 0 s
[2025-11-25 02:29:51] 2025-11-25 07:29:14,392 | INFO     | . initial setup = 9 s
[2025-11-25 02:29:51] 2025-11-25 07:29:14,392 | INFO     | . payload setup = 59 s
[2025-11-25 02:29:51] 2025-11-25 07:29:14,392 | INFO     | . stage-in = 0 s
[2025-11-25 02:29:51] 2025-11-25 07:29:14,392 | INFO     | . payload execution = 94825 s
[2025-11-25 02:29:51] 2025-11-25 07:29:14,392 | INFO     | . stage-out = 10 s
[2025-11-25 02:29:51] 2025-11-25 07:29:14,392 | INFO     | . log creation = 2 s
[2025-11-25 02:29:51] 2025-11-25 07:29:14,392 | INFO     | ..............................
[2025-11-25 02:29:51] 2025-11-25 07:29:14,624 | INFO     | 
[2025-11-25 02:29:51] 2025-11-25 07:29:14,624 | INFO     | job summary report
[2025-11-25 02:29:51] 2025-11-25 07:29:14,624 | INFO     | --------------------------------------------------
[2025-11-25 02:29:51] 2025-11-25 07:29:14,624 | INFO     | PanDA job id: 6891587802
[2025-11-25 02:29:51] 2025-11-25 07:29:14,624 | INFO     | task id: 47493068
[2025-11-25 02:29:51] 2025-11-25 07:29:14,624 | INFO     | errors: (none)
[2025-11-25 02:29:51] 2025-11-25 07:29:14,624 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 02:29:51] 2025-11-25 07:29:14,625 | INFO     | pilot state: finished 
[2025-11-25 02:29:51] 2025-11-25 07:29:14,625 | INFO     | transexitcode: 0
[2025-11-25 02:29:51] 2025-11-25 07:29:14,625 | INFO     | exeerrorcode: 0
[2025-11-25 02:29:51] 2025-11-25 07:29:14,625 | INFO     | exeerrordiag: 
[2025-11-25 02:29:51] 2025-11-25 07:29:14,625 | INFO     | exitcode: 0
[2025-11-25 02:29:51] 2025-11-25 07:29:14,625 | INFO     | exitmsg: OK
[2025-11-25 02:29:51] 2025-11-25 07:29:14,625 | INFO     | cpuconsumptiontime: 211209 s
[2025-11-25 02:29:51] 2025-11-25 07:29:14,625 | INFO     | nevents: 1000
[2025-11-25 02:29:51] 2025-11-25 07:29:14,625 | INFO     | neventsw: 0
[2025-11-25 02:29:51] 2025-11-25 07:29:14,625 | INFO     | pid: 1019003
[2025-11-25 02:29:51] 2025-11-25 07:29:14,625 | INFO     | pgrp: 1019003
[2025-11-25 02:29:51] 2025-11-25 07:29:14,625 | INFO     | corecount: 12
[2025-11-25 02:29:51] 2025-11-25 07:29:14,625 | INFO     | event service: False
[2025-11-25 02:29:51] 2025-11-25 07:29:14,625 | INFO     | sizes: {0: 2297967, 1: 2298568, 2: 2298680, 3: 2298879, 14: 2298879, 25: 2298907, 36: 2299063, 43: 2299353, 47: 2299381, 94890: 2368592, 94891: 2368591, 94901: 237
[2025-11-25 02:29:51] 2025-11-25 07:29:14,626 | INFO     | --------------------------------------------------
[2025-11-25 02:29:51] 2025-11-25 07:29:14,626 | INFO     | 
[2025-11-25 02:29:51] 2025-11-25 07:29:14,626 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-25 02:29:51] 2025-11-25 07:29:14,791 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 02:29:51] 2025-11-25 07:29:14,791 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 02:29:51] 2025-11-25 07:29:14,792 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 02:29:51] 2025-11-25 07:29:14,792 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 02:29:51] 2025-11-25 07:29:14,792 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 02:29:51] 2025-11-25 07:29:14,792 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 02:29:51] 2025-11-25 07:29:14,792 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 02:29:51] 2025-11-25 07:29:14,792 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 02:29:51] 2025-11-25 07:29:14,792 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 02:29:51] 2025-11-25 07:29:14,792 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 02:29:51] 2025-11-25 07:29:14,792 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 02:29:51] 2025-11-25 07:29:14,792 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 02:29:51] 2025-11-25 07:29:14,793 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 02:29:51] 2025-11-25 07:29:14,793 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 02:29:51] 2025-11-25 07:29:14,793 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 02:29:51] 2025-11-25 07:29:14,793 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 02:29:51] 2025-11-25 07:29:14,793 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 02:29:51] 2025-11-25 07:29:14,793 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 02:29:51] 2025-11-25 07:29:14,793 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 02:29:51] 2025-11-25 07:29:14,793 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 02:29:51] 2025-11-25 07:29:14,793 | INFO     | job 6891587802 has completed (purged errors)
[2025-11-25 02:29:51] 2025-11-25 07:29:14,794 | INFO     | overall cleanup function is called
[2025-11-25 02:29:51] 2025-11-25 07:29:15,880 | INFO     | --- collectZombieJob: --- 10, [1019003]
[2025-11-25 02:29:51] 2025-11-25 07:29:15,880 | INFO     | zombie collector waiting for pid 1019003
[2025-11-25 02:29:51] 2025-11-25 07:29:15,880 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 02:29:51] 2025-11-25 07:29:15,880 | INFO     | collected zombie processes
[2025-11-25 02:29:51] 2025-11-25 07:29:15,880 | INFO     | will attempt to kill all subprocesses of pid=1019003
[2025-11-25 02:29:51] 2025-11-25 07:29:18,460 | INFO     | process IDs to be killed: [1019003] (in reverse order)
[2025-11-25 02:29:51] 2025-11-25 07:29:19,902 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 02:29:51] 2025-11-25 07:29:19,902 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 02:29:51] 2025-11-25 07:29:20,018 | INFO     | did not find any defunct processes belonging to 1019003
[2025-11-25 02:29:51] 2025-11-25 07:29:20,106 | INFO     | did not find any defunct processes belonging to 1019003
[2025-11-25 02:29:51] 2025-11-25 07:29:20,129 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 02:29:51] 2025-11-25 07:29:20,129 | INFO     | ready for new job
[2025-11-25 02:29:51] 2025-11-25 07:29:20,129 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 02:29:51] 2025-11-25 07:29:20,143 | INFO     | ***************************************
[2025-11-25 02:29:51] 2025-11-25 07:29:20,144 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 02:29:51] 2025-11-25 07:29:20,144 | INFO     | ***************************************
[2025-11-25 02:29:51] 2025-11-25 07:29:20,144 | INFO     | 
[2025-11-25 02:29:51] 2025-11-25 07:29:20,171 | INFO     | architecture information:
[2025-11-25 02:29:51] 2025-11-25 07:29:20,179 | INFO     | executing command: cat /etc/os-release
[2025-11-25 02:29:51] 2025-11-25 07:29:20,300 | INFO     | cat /etc/os-release:
[2025-11-25 02:29:51] NAME="CentOS Linux"
[2025-11-25 02:29:51] VERSION="7 (Core)"
[2025-11-25 02:29:51] ID="centos"
[2025-11-25 02:29:51] ID_LIKE="rhel fedora"
[2025-11-25 02:29:51] VERSION_ID="7"
[2025-11-25 02:29:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 02:29:51] ANSI_COLOR="0;31"
[2025-11-25 02:29:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 02:29:51] HOME_URL="https://www.centos.org/"
[2025-11-25 02:29:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 02:29:51] 
[2025-11-25 02:29:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 02:29:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 02:29:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 02:29:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 02:29:51] 
[2025-11-25 02:29:51] 2025-11-25 07:29:20,301 | INFO     | ***************************************
[2025-11-25 02:29:51] 2025-11-25 07:29:20,804 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-25 02:29:51] 2025-11-25 07:29:20,981 | INFO     | sufficient remaining disk space (121805733888 B)
[2025-11-25 02:29:51] 2025-11-25 07:29:20,982 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 02:29:51] 2025-11-25 07:29:20,982 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 02:29:51] 2025-11-25 07:29:20,982 | INFO     | update_server=False
[2025-11-25 02:29:51] 2025-11-25 07:29:20,982 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 02:29:51] 2025-11-25 07:29:20,982 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 02:29:51] 2025-11-25 07:29:20,983 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:29:51] 2025-11-25 07:29:20,983 | INFO     | aborting loop
[2025-11-25 02:29:51] 2025-11-25 07:29:20,983 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 02:29:51] 2025-11-25 07:29:21,380 | INFO     | all job control threads have been joined
[2025-11-25 02:29:51] 2025-11-25 07:29:21,677 | INFO     | all data control threads have been joined
[2025-11-25 02:29:51] 2025-11-25 07:29:21,711 | INFO     | all payload control threads have been joined
[2025-11-25 02:29:51] 2025-11-25 07:29:21,988 | INFO     | [job] retrieve thread has finished
[2025-11-25 02:29:51] 2025-11-25 07:29:21,989 | INFO     | [job] job monitor thread has finished
[2025-11-25 02:29:51] 2025-11-25 07:29:22,079 | INFO     | [job] validate thread has finished
[2025-11-25 02:29:51] 2025-11-25 07:29:22,080 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 02:29:51] 2025-11-25 07:29:22,083 | INFO     | [data] copytool_in thread has finished
[2025-11-25 02:29:51] 2025-11-25 07:29:22,087 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 02:29:51] 2025-11-25 07:29:22,087 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 02:29:51] 2025-11-25 07:29:22,404 | INFO     | [job] control thread has finished
[2025-11-25 02:29:51] 2025-11-25 07:29:22,683 | INFO     | [data] control thread has finished
[2025-11-25 02:29:51] 2025-11-25 07:29:22,717 | INFO     | [payload] control thread has finished
[2025-11-25 02:29:51] 2025-11-25 07:29:22,721 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 02:29:51] 2025-11-25 07:29:22,911 | INFO     | [payload] failed_post thread has finished
[2025-11-25 02:29:51] 2025-11-25 07:29:22,990 | INFO     | [data] copytool_out thread has finished
[2025-11-25 02:29:51] 2025-11-25 07:29:23,535 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:29:51] 2025-11-25 07:29:23,555 | INFO     | [payload] validate_post thread has finished
[2025-11-25 02:29:51] 2025-11-25 07:29:24,541 | INFO     | [job] queue monitor thread has finished
[2025-11-25 02:29:51] 2025-11-25 07:29:24,992 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 02:29:51] 2025-11-25 07:29:30,877 | INFO     | [monitor] cgroup control has ended
[2025-11-25 02:29:51] 2025-11-25 07:29:32,833 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139755508598592)>', '<ExcThread(monitor, started 139754871973632)>']
[2025-11-25 02:29:51] 2025-11-25 07:29:37,859 | INFO     | all workflow threads have been joined
[2025-11-25 02:29:51] 2025-11-25 07:29:37,861 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 02:29:51] 2025-11-25 07:29:37,862 | INFO     | traces error code: 0
[2025-11-25 02:29:51] 2025-11-25 07:29:37,862 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 02:29:51] 2025-11-25 07:29:48,588 | INFO     | PID=999286 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 02:29:51] 2025-11-25 07:29:48,589 | INFO     | .. there are 19 such processes running
[2025-11-25 02:29:51] 2025-11-25 07:29:48,590 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 02:29:51] 2025-11-25 07:29:48,590 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 02:29:51] 2025-11-25 07:29:48,590 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 02:29:51] 2025-11-25 07:29:48,590 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 02:29:51] 2025-11-25 07:29:48,590 | CRITICAL | thread 'MainThread' is not alive
[2025-11-25 02:29:51] 2025-11-25 07:29:48,590 | INFO     | [monitor] control thread has ended
[2025-11-25 02:29:51] 2025-11-25 07:29:49,429 [wrapper] ==== pilot stdout END ====
[2025-11-25 02:29:51] 2025-11-25 07:29:49,451 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 02:29:51] 2025-11-25 07:29:49,473 [wrapper] pilotpid: 999286
[2025-11-25 02:29:51] 2025-11-25 07:29:49,521 [wrapper] Pilot exit status: 0
[2025-11-25 02:29:51] 2025-11-25 07:29:49,639 [wrapper] pandaids: 6891587802
[2025-11-25 02:29:51] 2025-11-25 07:29:50,112 [wrapper] cleanup supervisor_pilot 1191690 999287
[2025-11-25 02:29:51] 2025-11-25 07:29:50,132 [wrapper] Test setup, not cleaning
[2025-11-25 02:29:51] 2025-11-25 07:29:50,153 [wrapper] apfmon messages muted
[2025-11-25 02:29:51] 2025-11-25 07:29:50,176 [wrapper] ==== wrapper stdout END ====
[2025-11-25 02:29:51] 2025-11-25 07:29:50,207 [wrapper] ==== wrapper stderr END ====
[2025-11-25 02:29:51]  *** Error codes and diagnostics ***
[2025-11-25 02:29:51]     "exeErrorCode": 0,
[2025-11-25 02:29:51]     "exeErrorDiag": "",
[2025-11-25 02:29:51]     "pilotErrorCode": 0,
[2025-11-25 02:29:51]     "pilotErrorDiag": "",
[2025-11-25 02:29:51]  *** Listing of results directory ***
[2025-11-25 02:29:51] total 1333128
[2025-11-25 02:29:51] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 12:24 pilot3.tar.gz
[2025-11-25 02:29:51] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 12:35 queuedata.json
[2025-11-25 02:29:51] -rwx------. 1 boincer umatlas     36292 Nov 18 12:36 runpilot2-wrapper.sh
[2025-11-25 02:29:51] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 02:29:51] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:03 run_atlas
[2025-11-25 02:29:51] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:03 job.xml
[2025-11-25 02:29:51] -rw-r--r--. 2 boincer umatlas 412793751 Nov 24 00:04 EVNT.47493065._000504.pool.root.1
[2025-11-25 02:29:51] -rw-r--r--. 2 boincer umatlas     15120 Nov 24 00:04 start_atlas.sh
[2025-11-25 02:29:51] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:04 shared
[2025-11-25 02:29:51] -rw-r--r--. 2 boincer umatlas    590093 Nov 24 00:04 input.tar.gz
[2025-11-25 02:29:51] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:04 boinc_lockfile
[2025-11-25 02:29:51] -rw-r--r--. 1 boincer umatlas      2772 Nov 24 00:04 pandaJob.out
[2025-11-25 02:29:51] -rw-------. 1 boincer umatlas    989786 Nov 24 00:05 agis_schedconf.cvmfs.json
[2025-11-25 02:29:51] drwx------. 5 boincer umatlas      4096 Nov 24 00:05 pilot3
[2025-11-25 02:29:51] -rw-r--r--. 1 boincer umatlas       533 Nov 25 02:08 boinc_task_state.xml
[2025-11-25 02:29:51] -rw-r--r--. 1 boincer umatlas      6947 Nov 25 02:19 init_data.xml
[2025-11-25 02:29:51] -rw-------. 1 boincer umatlas 918576166 Nov 25 02:26 HITS.47493068._005032.pool.root.1
[2025-11-25 02:29:51] -rw-------. 1 boincer umatlas      1071 Nov 25 02:28 memory_monitor_summary.json
[2025-11-25 02:29:51] -rw-------. 1 boincer umatlas   1516227 Nov 25 02:28 agis_ddmendpoints.agis.ALL.json
[2025-11-25 02:29:51] -rw-------. 1 boincer umatlas   3019035 Nov 25 02:28 log.47493068._005032.job.log.tgz.1
[2025-11-25 02:29:51] -rw-------. 1 boincer umatlas        95 Nov 25 02:28 pilot_heartbeat.json
[2025-11-25 02:29:51] -rw-------. 1 boincer umatlas      8645 Nov 25 02:29 heartbeat.json
[2025-11-25 02:29:51] -rw-------. 1 boincer umatlas       892 Nov 25 02:29 pilotlog.txt
[2025-11-25 02:29:51] -rw-------. 1 boincer umatlas  11901516 Nov 25 02:29 log.47493068._005032.job.log.1
[2025-11-25 02:29:51] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 02:29 boinc_mmap_file
[2025-11-25 02:29:51] -rw-r--r--. 1 boincer umatlas        29 Nov 25 02:29 wrapper_checkpoint.txt
[2025-11-25 02:29:51] -rw-------. 1 boincer umatlas       353 Nov 25 02:29 output.list
[2025-11-25 02:29:51] -rw-r--r--. 1 boincer umatlas       620 Nov 25 02:29 runtime_log
[2025-11-25 02:29:51] -rw-------. 1 boincer umatlas  14940160 Nov 25 02:29 result.tar.gz
[2025-11-25 02:29:51] -rw-r--r--. 1 boincer umatlas      8701 Nov 25 02:29 runtime_log.err
[2025-11-25 02:29:51] -rw-------. 1 boincer umatlas       665 Nov 25 02:29 DtKKDm8nef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmq5FKDmjIYSzn.diag
[2025-11-25 02:29:51] -rw-r--r--. 1 boincer umatlas     21800 Nov 25 02:29 stderr.txt
[2025-11-25 02:30:11] HITS file was successfully produced:
[2025-11-25 02:30:11] -rw-------. 1 boincer umatlas 918576166 Nov 25 02:26 shared/HITS.pool.root.1
[2025-11-25 02:30:11]  *** Contents of shared directory: ***
[2025-11-25 02:30:11] total 1315364
[2025-11-25 02:30:11] -rw-r--r--. 2 boincer umatlas 412793751 Nov 24 00:04 ATLAS.root_0
[2025-11-25 02:30:11] -rw-r--r--. 2 boincer umatlas     15120 Nov 24 00:04 start_atlas.sh
[2025-11-25 02:30:11] -rw-r--r--. 2 boincer umatlas    590093 Nov 24 00:04 input.tar.gz
[2025-11-25 02:30:11] -rw-------. 1 boincer umatlas 918576166 Nov 25 02:26 HITS.pool.root.1
[2025-11-25 02:30:11] -rw-------. 1 boincer umatlas  14940160 Nov 25 02:29 result.tar.gz
02:30:12 (990736): run_atlas exited; CPU time 211640.892122
02:30:12 (990736): called boinc_finish(0)

</stderr_txt>
]]>

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