Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:45:53 (640041): wrapper (7.7.26015): starting
13:45:53 (640041): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 13:45:53] Arguments: --nthreads 9
[2025-11-24 13:45:53] Threads: 9
[2025-11-24 13:45:53] Checking for CVMFS
[2025-11-24 13:45:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 13:45:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 13:45:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 13:45:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 13:45:55] 2.13.3.0 12468 27550 354652 153255 3 257 19607647 32947201 29052 16776704 0 107856000 99.415 157812097 33882 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 13:45:55] CVMFS is ok
[2025-11-24 13:45:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 13:45:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 13:45:55] Further information can be found at the LHC@home message board.
[2025-11-24 13:45:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 13:45:55] Checking for apptainer binary...
[2025-11-24 13:45:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 13:45:55] Running /usr/bin/apptainer --version
[2025-11-24 13:45:55] apptainer version 1.4.4-1.el9
[2025-11-24 13:45:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 13:45:55] c6-6-8-1.aglt2.org
[2025-11-24 13:45:55] apptainer works
[2025-11-24 13:45:55] Set ATHENA_PROC_NUMBER=9
[2025-11-24 13:45:55] Set ATHENA_CORE_NUMBER=9
[2025-11-24 13:45:55] Starting ATLAS job with PandaID=6895350474
[2025-11-24 13:45:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 07:12:46]  *** The last 200 lines of the pilot log: ***
[2025-11-25 07:12:46] 2025-11-25 12:11:44,690 | INFO     | .. there are 40 such processes running
[2025-11-25 07:12:46] 2025-11-25 12:11:45,260 | INFO     | monitor loop #3413: job 0:6895350474 is in state 'finished'
[2025-11-25 07:12:46] 2025-11-25 12:11:45,261 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 07:12:46] 2025-11-25 12:11:45,690 | INFO     | time since job start (62704s) is within the limit (172800.0s)
[2025-11-25 07:12:46] 2025-11-25 12:11:47,700 | INFO     | time since job start (62706s) is within the limit (172800.0s)
[2025-11-25 07:12:46] 2025-11-25 12:11:47,769 | INFO     | monitor loop #3414: job 0:6895350474 is in state 'finished'
[2025-11-25 07:12:46] 2025-11-25 12:11:47,769 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 07:12:46] 2025-11-25 12:11:49,709 | INFO     | time since job start (62708s) is within the limit (172800.0s)
[2025-11-25 07:12:46] 2025-11-25 12:11:50,292 | INFO     | monitor loop #3415: job 0:6895350474 is in state 'finished'
[2025-11-25 07:12:46] 2025-11-25 12:11:50,293 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 07:12:46] 2025-11-25 12:11:51,718 | INFO     | time since job start (62710s) is within the limit (172800.0s)
[2025-11-25 07:12:46] 2025-11-25 12:11:52,798 | INFO     | monitor loop #3416: job 0:6895350474 is in state 'finished'
[2025-11-25 07:12:46] 2025-11-25 12:11:52,811 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 07:12:46] 2025-11-25 12:11:53,727 | INFO     | time since job start (62712s) is within the limit (172800.0s)
[2025-11-25 07:12:46] 2025-11-25 12:11:55,033 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 07:12:46] 2025-11-25 12:11:55,113 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2605.561989583334
[2025-11-25 07:12:46] 2025-11-25 12:11:55,240 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895350474/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 07:12:46] 2025-11-25 12:11:55,261 | INFO     | extracted standard info from prmon json
[2025-11-25 07:12:46] 2025-11-25 12:11:55,261 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 07:12:46] 2025-11-25 12:11:55,261 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 07:12:46] 2025-11-25 12:11:55,281 | INFO     | fitting pss+swap vs Time
[2025-11-25 07:12:46] 2025-11-25 12:11:55,283 | INFO     | sum of square deviations: 334985950894.1488
[2025-11-25 07:12:46] 2025-11-25 12:11:55,321 | INFO     | sum of deviations: 395429595422.6681
[2025-11-25 07:12:46] 2025-11-25 12:11:55,321 | INFO     | mean x: 1764041362.4814816
[2025-11-25 07:12:46] 2025-11-25 12:11:55,321 | INFO     | mean y: 3034852.6403508773
[2025-11-25 07:12:46] 2025-11-25 12:11:55,322 | INFO     | intersect: -2079303706.3737924
[2025-11-25 07:12:46] 2025-11-25 12:11:55,330 | INFO     | chi2: 24.46911079055587
[2025-11-25 07:12:46] 2025-11-25 12:11:55,332 | INFO     | sum of square deviations: 330114949413.9877
[2025-11-25 07:12:46] 2025-11-25 12:11:55,432 | INFO     | monitor loop #3417: job 0:6895350474 is in state 'finished'
[2025-11-25 07:12:46] 2025-11-25 12:11:55,432 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 07:12:46] 2025-11-25 12:11:55,478 | INFO     | sum of deviations: 751663573778.5853
[2025-11-25 07:12:46] 2025-11-25 12:11:55,498 | INFO     | mean x: 1764041210.0039177
[2025-11-25 07:12:46] 2025-11-25 12:11:55,499 | INFO     | mean y: 3046001.3535749265
[2025-11-25 07:12:46] 2025-11-25 12:11:55,499 | INFO     | intersect: -4013632196.82578
[2025-11-25 07:12:46] 2025-11-25 12:11:55,500 | INFO     | chi2: 21.071638403750928
[2025-11-25 07:12:46] 2025-11-25 12:11:55,501 | INFO     | current chi2=21.071638403750928 (change=13.884739890573528 %)
[2025-11-25 07:12:46] 2025-11-25 12:11:55,501 | INFO     | right removable region: 1020
[2025-11-25 07:12:46] 2025-11-25 12:11:55,524 | INFO     | sum of square deviations: 330111956371.9665
[2025-11-25 07:12:46] 2025-11-25 12:11:55,606 | INFO     | sum of deviations: 46409729290.20578
[2025-11-25 07:12:46] 2025-11-25 12:11:55,607 | INFO     | mean x: 1764041515.0058765
[2025-11-25 07:12:46] 2025-11-25 12:11:55,607 | INFO     | mean y: 3045767.6327130264
[2025-11-25 07:12:46] 2025-11-25 12:11:55,607 | INFO     | intersect: -244957031.38089943
[2025-11-25 07:12:46] 2025-11-25 12:11:55,633 | INFO     | chi2: 21.834465456697828
[2025-11-25 07:12:46] 2025-11-25 12:11:55,633 | INFO     | current chi2=21.834465456697828 (change=10.76722957531793 %)
[2025-11-25 07:12:46] 2025-11-25 12:11:55,633 | INFO     | left removable region: 10
[2025-11-25 07:12:46] 2025-11-25 12:11:55,634 | INFO     | sum of square deviations: 319559992277.71844
[2025-11-25 07:12:46] 2025-11-25 12:11:55,899 | INFO     | sum of deviations: 396653323054.48206
[2025-11-25 07:12:46] 2025-11-25 12:11:55,899 | INFO     | mean x: 1764041484.5524752
[2025-11-25 07:12:46] 2025-11-25 12:11:55,899 | INFO     | mean y: 3061486.0475247526
[2025-11-25 07:12:46] 2025-11-25 12:11:55,899 | INFO     | intersect: -2186552150.710874
[2025-11-25 07:12:46] 2025-11-25 12:11:55,905 | INFO     | chi2: 17.757831011027605
[2025-11-25 07:12:46] 2025-11-25 12:11:55,905 | INFO     | current memory leak: 1.24 B/s (using 1010 data points, chi2=17.76)
[2025-11-25 07:12:46] 2025-11-25 12:11:55,907 | INFO     | could have reported an average CPU frequency of 2612 MHz (38 samples)
[2025-11-25 07:12:46] 2025-11-25 12:11:55,907 | INFO     | ..............................
[2025-11-25 07:12:46] 2025-11-25 12:11:55,907 | INFO     | . Timing measurements:
[2025-11-25 07:12:46] 2025-11-25 12:11:55,907 | INFO     | . get job = 0 s
[2025-11-25 07:12:46] 2025-11-25 12:11:55,907 | INFO     | . initial setup = 3 s
[2025-11-25 07:12:46] 2025-11-25 12:11:55,907 | INFO     | . payload setup = 27 s
[2025-11-25 07:12:46] 2025-11-25 12:11:55,907 | INFO     | . stage-in = 0 s
[2025-11-25 07:12:46] 2025-11-25 12:11:55,907 | INFO     | . payload execution = 62590 s
[2025-11-25 07:12:46] 2025-11-25 12:11:55,907 | INFO     | . stage-out = 9 s
[2025-11-25 07:12:46] 2025-11-25 12:11:55,907 | INFO     | . log creation = 1 s
[2025-11-25 07:12:46] 2025-11-25 12:11:55,907 | INFO     | ..............................
[2025-11-25 07:12:46] 2025-11-25 12:11:55,928 | INFO     | time since job start (62714s) is within the limit (172800.0s)
[2025-11-25 07:12:46] 2025-11-25 12:11:56,121 | INFO     | 
[2025-11-25 07:12:46] 2025-11-25 12:11:56,121 | INFO     | job summary report
[2025-11-25 07:12:46] 2025-11-25 12:11:56,121 | INFO     | --------------------------------------------------
[2025-11-25 07:12:46] 2025-11-25 12:11:56,121 | INFO     | PanDA job id: 6895350474
[2025-11-25 07:12:46] 2025-11-25 12:11:56,121 | INFO     | task id: 47556137
[2025-11-25 07:12:46] 2025-11-25 12:11:56,121 | INFO     | errors: (none)
[2025-11-25 07:12:46] 2025-11-25 12:11:56,121 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 07:12:46] 2025-11-25 12:11:56,121 | INFO     | pilot state: finished 
[2025-11-25 07:12:46] 2025-11-25 12:11:56,121 | INFO     | transexitcode: 0
[2025-11-25 07:12:46] 2025-11-25 12:11:56,121 | INFO     | exeerrorcode: 0
[2025-11-25 07:12:46] 2025-11-25 12:11:56,122 | INFO     | exeerrordiag: 
[2025-11-25 07:12:46] 2025-11-25 12:11:56,122 | INFO     | exitcode: 0
[2025-11-25 07:12:46] 2025-11-25 12:11:56,122 | INFO     | exitmsg: OK
[2025-11-25 07:12:46] 2025-11-25 12:11:56,122 | INFO     | cpuconsumptiontime: 277570 s
[2025-11-25 07:12:46] 2025-11-25 12:11:56,122 | INFO     | nevents: 1000
[2025-11-25 07:12:46] 2025-11-25 12:11:56,122 | INFO     | neventsw: 0
[2025-11-25 07:12:46] 2025-11-25 12:11:56,122 | INFO     | pid: 661943
[2025-11-25 07:12:46] 2025-11-25 12:11:56,122 | INFO     | pgrp: 661943
[2025-11-25 07:12:46] 2025-11-25 12:11:56,122 | INFO     | corecount: 9
[2025-11-25 07:12:46] 2025-11-25 12:11:56,122 | INFO     | event service: False
[2025-11-25 07:12:46] 2025-11-25 12:11:56,122 | INFO     | sizes: {0: 2283431, 1: 2284032, 2: 2284315, 3: 2284343, 14: 2284343, 23: 2284633, 24: 2284789, 62624: 2336555, 62625: 2336554, 62635: 2345609, 62639: 2345665, 6267
[2025-11-25 07:12:46] 2025-11-25 12:11:56,122 | INFO     | --------------------------------------------------
[2025-11-25 07:12:46] 2025-11-25 12:11:56,122 | INFO     | 
[2025-11-25 07:12:46] 2025-11-25 12:11:56,122 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 07:12:46] 2025-11-25 12:11:56,177 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 07:12:46] 2025-11-25 12:11:56,177 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 07:12:46] 2025-11-25 12:11:56,177 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 07:12:46] 2025-11-25 12:11:56,177 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 07:12:46] 2025-11-25 12:11:56,177 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 07:12:46] 2025-11-25 12:11:56,177 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 07:12:46] 2025-11-25 12:11:56,177 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 07:12:46] 2025-11-25 12:11:56,178 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 07:12:46] 2025-11-25 12:11:56,178 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 07:12:46] 2025-11-25 12:11:56,178 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 07:12:46] 2025-11-25 12:11:56,178 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 07:12:46] 2025-11-25 12:11:56,178 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 07:12:46] 2025-11-25 12:11:56,178 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 07:12:46] 2025-11-25 12:11:56,178 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 07:12:46] 2025-11-25 12:11:56,178 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 07:12:46] 2025-11-25 12:11:56,178 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 07:12:46] 2025-11-25 12:11:56,178 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 07:12:46] 2025-11-25 12:11:56,178 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 07:12:46] 2025-11-25 12:11:56,178 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 07:12:46] 2025-11-25 12:11:56,179 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 07:12:46] 2025-11-25 12:11:56,179 | INFO     | job 6895350474 has completed (purged errors)
[2025-11-25 07:12:46] 2025-11-25 12:11:56,179 | INFO     | overall cleanup function is called
[2025-11-25 07:12:46] 2025-11-25 12:11:57,222 | INFO     | --- collectZombieJob: --- 10, [661943]
[2025-11-25 07:12:46] 2025-11-25 12:11:57,223 | INFO     | zombie collector waiting for pid 661943
[2025-11-25 07:12:46] 2025-11-25 12:11:57,223 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 07:12:46] 2025-11-25 12:11:57,223 | INFO     | collected zombie processes
[2025-11-25 07:12:46] 2025-11-25 12:11:57,223 | INFO     | will attempt to kill all subprocesses of pid=661943
[2025-11-25 07:12:46] 2025-11-25 12:11:58,917 | INFO     | process IDs to be killed: [661943] (in reverse order)
[2025-11-25 07:12:46] 2025-11-25 12:11:59,110 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 07:12:46] 2025-11-25 12:11:59,110 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 07:12:46] 2025-11-25 12:11:59,149 | INFO     | did not find any defunct processes belonging to 661943
[2025-11-25 07:12:46] 2025-11-25 12:11:59,214 | INFO     | did not find any defunct processes belonging to 661943
[2025-11-25 07:12:46] 2025-11-25 12:11:59,231 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 07:12:46] 2025-11-25 12:11:59,231 | INFO     | ready for new job
[2025-11-25 07:12:46] 2025-11-25 12:11:59,231 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 07:12:46] 2025-11-25 12:11:59,259 | INFO     | ***************************************
[2025-11-25 07:12:46] 2025-11-25 12:11:59,259 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 07:12:46] 2025-11-25 12:11:59,259 | INFO     | ***************************************
[2025-11-25 07:12:46] 2025-11-25 12:11:59,259 | INFO     | 
[2025-11-25 07:12:46] 2025-11-25 12:11:59,308 | INFO     | architecture information:
[2025-11-25 07:12:46] 2025-11-25 12:11:59,312 | INFO     | executing command: cat /etc/os-release
[2025-11-25 07:12:46] 2025-11-25 12:11:59,374 | INFO     | cat /etc/os-release:
[2025-11-25 07:12:46] NAME="CentOS Linux"
[2025-11-25 07:12:46] VERSION="7 (Core)"
[2025-11-25 07:12:46] ID="centos"
[2025-11-25 07:12:46] ID_LIKE="rhel fedora"
[2025-11-25 07:12:46] VERSION_ID="7"
[2025-11-25 07:12:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 07:12:46] ANSI_COLOR="0;31"
[2025-11-25 07:12:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 07:12:46] HOME_URL="https://www.centos.org/"
[2025-11-25 07:12:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 07:12:46] 
[2025-11-25 07:12:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 07:12:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 07:12:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 07:12:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 07:12:46] 
[2025-11-25 07:12:46] 2025-11-25 12:11:59,375 | INFO     | ***************************************
[2025-11-25 07:12:46] 2025-11-25 12:11:59,878 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 07:12:46] 2025-11-25 12:11:59,933 | INFO     | sufficient remaining disk space (67455942656 B)
[2025-11-25 07:12:46] 2025-11-25 12:11:59,933 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 07:12:46] 2025-11-25 12:11:59,933 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 07:12:46] 2025-11-25 12:11:59,933 | INFO     | update_server=False
[2025-11-25 07:12:46] 2025-11-25 12:11:59,933 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 07:12:46] 2025-11-25 12:11:59,934 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 07:12:46] 2025-11-25 12:11:59,934 | INFO     | aborting loop
[2025-11-25 07:12:46] 2025-11-25 12:12:00,393 | INFO     | all payload control threads have been joined
[2025-11-25 07:12:46] 2025-11-25 12:12:00,453 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 07:12:46] 2025-11-25 12:12:00,938 | INFO     | [job] retrieve thread has finished
[2025-11-25 07:12:46] 2025-11-25 12:12:00,942 | INFO     | [job] job monitor thread has finished
[2025-11-25 07:12:46] 2025-11-25 12:12:00,972 | INFO     | all data control threads have been joined
[2025-11-25 07:12:46] 2025-11-25 12:12:01,076 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 07:12:46] 2025-11-25 12:12:01,083 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 07:12:46] 2025-11-25 12:12:01,084 | INFO     | [data] copytool_in thread has finished
[2025-11-25 07:12:46] 2025-11-25 12:12:01,084 | INFO     | [job] validate thread has finished
[2025-11-25 07:12:46] 2025-11-25 12:12:01,139 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 07:12:46] 2025-11-25 12:12:01,148 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 07:12:46] 2025-11-25 12:12:01,208 | INFO     | all job control threads have been joined
[2025-11-25 07:12:46] 2025-11-25 12:12:01,306 | INFO     | [payload] failed_post thread has finished
[2025-11-25 07:12:46] 2025-11-25 12:12:01,399 | INFO     | [payload] control thread has finished
[2025-11-25 07:12:46] 2025-11-25 12:12:01,775 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 07:12:46] 2025-11-25 12:12:01,872 | INFO     | [payload] validate_post thread has finished
[2025-11-25 07:12:46] 2025-11-25 12:12:01,981 | INFO     | [data] control thread has finished
[2025-11-25 07:12:46] 2025-11-25 12:12:02,157 | INFO     | [job] queue monitor thread has finished
[2025-11-25 07:12:46] 2025-11-25 12:12:02,214 | INFO     | [job] control thread has finished
[2025-11-25 07:12:46] 2025-11-25 12:12:02,461 | INFO     | [data] copytool_out thread has finished
[2025-11-25 07:12:46] 2025-11-25 12:12:03,338 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 07:12:46] 2025-11-25 12:12:07,354 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 07:12:46] 2025-11-25 12:12:33,932 | INFO     | PID=651957 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 07:12:46] 2025-11-25 12:12:33,932 | INFO     | .. there are 40 such processes running
[2025-11-25 07:12:46] 2025-11-25 12:12:33,988 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 07:12:46] 2025-11-25 12:12:33,989 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 07:12:46] 2025-11-25 12:12:33,989 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 07:12:46] 2025-11-25 12:12:35,374 | INFO     | [monitor] cgroup control has ended
[2025-11-25 07:12:46] 2025-11-25 12:12:37,174 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140268449900352)>', '<ExcThread(monitor, started 140268086994688)>']
[2025-11-25 07:12:46] 2025-11-25 12:12:38,076 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 07:12:46] 2025-11-25 12:12:38,076 | INFO     | [monitor] control thread has ended
[2025-11-25 07:12:46] 2025-11-25 12:12:42,216 | INFO     | all workflow threads have been joined
[2025-11-25 07:12:46] 2025-11-25 12:12:42,216 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 07:12:46] 2025-11-25 12:12:42,217 | INFO     | traces error code: 0
[2025-11-25 07:12:46] 2025-11-25 12:12:42,217 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 07:12:46] 2025-11-25 12:12:45,577 [wrapper] ==== pilot stdout END ====
[2025-11-25 07:12:46] 2025-11-25 12:12:45,613 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 07:12:46] 2025-11-25 12:12:45,625 [wrapper] pilotpid: 651957
[2025-11-25 07:12:46] 2025-11-25 12:12:45,628 [wrapper] Pilot exit status: 0
[2025-11-25 07:12:46] 2025-11-25 12:12:45,728 [wrapper] pandaids: 6895350474
[2025-11-25 07:12:46] 2025-11-25 12:12:46,101 [wrapper] cleanup supervisor_pilot 3965006 651959
[2025-11-25 07:12:46] 2025-11-25 12:12:46,144 [wrapper] Test setup, not cleaning
[2025-11-25 07:12:46] 2025-11-25 12:12:46,231 [wrapper] apfmon messages muted
[2025-11-25 07:12:46] 2025-11-25 12:12:46,252 [wrapper] ==== wrapper stdout END ====
[2025-11-25 07:12:46] 2025-11-25 12:12:46,297 [wrapper] ==== wrapper stderr END ====
[2025-11-25 07:12:46]  *** Error codes and diagnostics ***
[2025-11-25 07:12:46]     "exeErrorCode": 0,
[2025-11-25 07:12:46]     "exeErrorDiag": "",
[2025-11-25 07:12:46]     "pilotErrorCode": 0,
[2025-11-25 07:12:46]     "pilotErrorDiag": "",
[2025-11-25 07:12:46]  *** Listing of results directory ***
[2025-11-25 07:12:46] total 1318160
[2025-11-25 07:12:46] -rw-r--r-- 1 boincer umatlas    576529 Nov 22 16:11 pilot3.tar.gz
[2025-11-25 07:12:46] -rwx------ 1 boincer umatlas     36292 Nov 22 16:20 runpilot2-wrapper.sh
[2025-11-25 07:12:46] -rw-r--r-- 1 boincer umatlas      5112 Nov 22 16:20 queuedata.json
[2025-11-25 07:12:46] -rw-r--r-- 1 boincer umatlas       100 Nov 24 13:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 07:12:46] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 13:45 run_atlas
[2025-11-25 07:12:46] -rw-r--r-- 1 boincer umatlas       105 Nov 24 13:45 job.xml
[2025-11-25 07:12:46] -rw-r--r-- 2 boincer umatlas 407307266 Nov 24 13:45 EVNT.47483658._000512.pool.root.1
[2025-11-25 07:12:46] drwxrwx--x 2 boincer umatlas      4096 Nov 24 13:45 shared
[2025-11-25 07:12:46] -rw-r--r-- 2 boincer umatlas    590100 Nov 24 13:45 input.tar.gz
[2025-11-25 07:12:46] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 13:45 start_atlas.sh
[2025-11-25 07:12:46] -rw-r--r-- 1 boincer umatlas         0 Nov 24 13:45 boinc_lockfile
[2025-11-25 07:12:46] -rw-r--r-- 1 boincer umatlas      2785 Nov 24 13:45 pandaJob.out
[2025-11-25 07:12:46] -rw------- 1 boincer umatlas        57 Nov 24 13:45 setup.sh.local
[2025-11-25 07:12:46] -rw------- 1 boincer umatlas    991801 Nov 24 13:46 agis_schedconf.cvmfs.json
[2025-11-25 07:12:46] drwx------ 5 boincer umatlas      4096 Nov 24 13:46 pilot3
[2025-11-25 07:12:46] -rw-r--r-- 1 boincer umatlas       533 Nov 25 06:29 boinc_task_state.xml
[2025-11-25 07:12:46] -rw------- 1 boincer umatlas 919294707 Nov 25 07:09 HITS.47556137._005080.pool.root.1
[2025-11-25 07:12:46] -rw------- 1 boincer umatlas      1066 Nov 25 07:11 memory_monitor_summary.json
[2025-11-25 07:12:46] -rw------- 1 boincer umatlas   1516240 Nov 25 07:11 agis_ddmendpoints.agis.ALL.json
[2025-11-25 07:12:46] -rw------- 1 boincer umatlas   2230912 Nov 25 07:11 log.47556137._005080.job.log.tgz.1
[2025-11-25 07:12:46] -rw-r--r-- 1 boincer umatlas      6878 Nov 25 07:11 init_data.xml
[2025-11-25 07:12:46] -rw------- 1 boincer umatlas      7962 Nov 25 07:11 heartbeat.json
[2025-11-25 07:12:46] -rw------- 1 boincer umatlas        95 Nov 25 07:12 pilot_heartbeat.json
[2025-11-25 07:12:46] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 07:12 boinc_mmap_file
[2025-11-25 07:12:46] -rw------- 1 boincer umatlas      4823 Nov 25 07:12 pilotlog.txt
[2025-11-25 07:12:46] -rw-r--r-- 1 boincer umatlas        29 Nov 25 07:12 wrapper_checkpoint.txt
[2025-11-25 07:12:46] -rw------- 1 boincer umatlas   7403250 Nov 25 07:12 log.47556137._005080.job.log.1
[2025-11-25 07:12:46] -rw------- 1 boincer umatlas       353 Nov 25 07:12 output.list
[2025-11-25 07:12:46] -rw-r--r-- 1 boincer umatlas       620 Nov 25 07:12 runtime_log
[2025-11-25 07:12:46] -rw------- 1 boincer umatlas   9656320 Nov 25 07:12 result.tar.gz
[2025-11-25 07:12:46] -rw-r--r-- 1 boincer umatlas      9343 Nov 25 07:12 runtime_log.err
[2025-11-25 07:12:46] -rw------- 1 boincer umatlas       661 Nov 25 07:12 4XbLDmADAh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwIIKDmOpILrn.diag
[2025-11-25 07:12:46] -rw-r--r-- 1 boincer umatlas     21787 Nov 25 07:12 stderr.txt
[2025-11-25 07:12:46] HITS file was successfully produced:
[2025-11-25 07:12:46] -rw------- 1 boincer umatlas 919294707 Nov 25 07:09 shared/HITS.pool.root.1
[2025-11-25 07:12:46]  *** Contents of shared directory: ***
[2025-11-25 07:12:46] total 1305552
[2025-11-25 07:12:46] -rw-r--r-- 2 boincer umatlas 407307266 Nov 24 13:45 ATLAS.root_0
[2025-11-25 07:12:46] -rw-r--r-- 2 boincer umatlas    590100 Nov 24 13:45 input.tar.gz
[2025-11-25 07:12:46] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 13:45 start_atlas.sh
[2025-11-25 07:12:46] -rw------- 1 boincer umatlas 919294707 Nov 25 07:09 HITS.pool.root.1
[2025-11-25 07:12:46] -rw------- 1 boincer umatlas   9656320 Nov 25 07:12 result.tar.gz
07:12:48 (640041): run_atlas exited; CPU time 279606.192696
07:12:48 (640041): called boinc_finish(0)

</stderr_txt>
]]>

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