Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:09 (667743): wrapper (7.7.26015): starting
00:03:09 (667743): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:03:09] Arguments: --nthreads 9
[2025-11-24 00:03:09] Threads: 9
[2025-11-24 00:03:09] Checking for CVMFS
[2025-11-24 00:03:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:03:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:03:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:03:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:03:11] 2.13.3.0 11541 26724 377248 153233 1 607 29197691 32935936 19074 16776704 0 55758823 99.295 100126441 40545 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:03:11] CVMFS is ok
[2025-11-24 00:03:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:03:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:03:11] Further information can be found at the LHC@home message board.
[2025-11-24 00:03:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:03:11] Checking for apptainer binary...
[2025-11-24 00:03:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:03:11] Running /usr/bin/apptainer --version
[2025-11-24 00:03:11] apptainer version 1.4.4-1.el9
[2025-11-24 00:03:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:03:12] c6-1-26-1.aglt2.org
[2025-11-24 00:03:12] apptainer works
[2025-11-24 00:03:12] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:03:12] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:03:12] Starting ATLAS job with PandaID=6895356206
[2025-11-24 00:03:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 23:25:14]  *** The last 200 lines of the pilot log: ***
[2025-11-24 23:25:14] 2025-11-25 04:24:03,547 | INFO     | time since job start (83963s) is within the limit (172800.0s)
[2025-11-24 23:25:14] 2025-11-25 04:24:05,081 | INFO     | monitor loop #4976: job 0:6895356206 is in state 'finished'
[2025-11-24 23:25:14] 2025-11-25 04:24:05,082 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:25:14] 2025-11-25 04:24:05,564 | INFO     | time since job start (83965s) is within the limit (172800.0s)
[2025-11-24 23:25:14] 2025-11-25 04:24:07,582 | INFO     | time since job start (83967s) is within the limit (172800.0s)
[2025-11-24 23:25:14] 2025-11-25 04:24:07,586 | INFO     | monitor loop #4977: job 0:6895356206 is in state 'finished'
[2025-11-24 23:25:14] 2025-11-25 04:24:07,590 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:25:14] 2025-11-25 04:24:09,588 | INFO     | time since job start (83969s) is within the limit (172800.0s)
[2025-11-24 23:25:14] 2025-11-25 04:24:10,094 | INFO     | monitor loop #4978: job 0:6895356206 is in state 'finished'
[2025-11-24 23:25:14] 2025-11-25 04:24:10,095 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:25:14] 2025-11-25 04:24:11,602 | INFO     | time since job start (83971s) is within the limit (172800.0s)
[2025-11-24 23:25:14] 2025-11-25 04:24:12,603 | INFO     | monitor loop #4979: job 0:6895356206 is in state 'finished'
[2025-11-24 23:25:14] 2025-11-25 04:24:12,603 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:25:14] 2025-11-25 04:24:13,611 | INFO     | time since job start (83973s) is within the limit (172800.0s)
[2025-11-24 23:25:14] 2025-11-25 04:24:15,120 | INFO     | monitor loop #4980: job 0:6895356206 is in state 'finished'
[2025-11-24 23:25:14] 2025-11-25 04:24:15,121 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:25:14] 2025-11-25 04:24:15,640 | INFO     | time since job start (83975s) is within the limit (172800.0s)
[2025-11-24 23:25:14] 2025-11-25 04:24:15,835 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 23:25:14] 2025-11-25 04:24:15,841 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2793.9925357142856
[2025-11-24 23:25:14] 2025-11-25 04:24:15,856 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895356206/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 23:25:14] 2025-11-25 04:24:15,857 | INFO     | extracted standard info from prmon json
[2025-11-24 23:25:14] 2025-11-25 04:24:15,857 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 23:25:14] 2025-11-25 04:24:15,857 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 23:25:14] 2025-11-25 04:24:15,875 | INFO     | fitting pss+swap vs Time
[2025-11-24 23:25:14] 2025-11-25 04:24:15,877 | INFO     | sum of square deviations: 804195004083.1152
[2025-11-24 23:25:14] 2025-11-25 04:24:15,981 | INFO     | sum of deviations: 5939486507337.181
[2025-11-24 23:25:14] 2025-11-25 04:24:15,981 | INFO     | mean x: 1764002736.194323
[2025-11-24 23:25:14] 2025-11-25 04:24:15,981 | INFO     | mean y: 3056756.534934498
[2025-11-24 23:25:14] 2025-11-25 04:24:15,982 | INFO     | intersect: -13025214244.075762
[2025-11-24 23:25:14] 2025-11-25 04:24:15,983 | INFO     | chi2: 18.85611180668751
[2025-11-24 23:25:14] 2025-11-25 04:24:15,989 | INFO     | sum of square deviations: 795447485827.126
[2025-11-24 23:25:14] 2025-11-25 04:24:16,049 | INFO     | sum of deviations: 6420895468799.032
[2025-11-24 23:25:14] 2025-11-25 04:24:16,054 | INFO     | mean x: 1764002583.707816
[2025-11-24 23:25:14] 2025-11-25 04:24:16,055 | INFO     | mean y: 3065147.0825420013
[2025-11-24 23:25:14] 2025-11-25 04:24:16,055 | INFO     | intersect: -14236059871.839043
[2025-11-24 23:25:14] 2025-11-25 04:24:16,056 | INFO     | chi2: 15.663877971350788
[2025-11-24 23:25:14] 2025-11-25 04:24:16,056 | INFO     | current chi2=15.663877971350788 (change=16.929438412666634 %)
[2025-11-24 23:25:14] 2025-11-25 04:24:16,057 | INFO     | right removable region: 1368
[2025-11-24 23:25:14] 2025-11-25 04:24:16,058 | INFO     | sum of square deviations: 795444389467.1282
[2025-11-24 23:25:14] 2025-11-25 04:24:16,125 | INFO     | sum of deviations: 5335048158106.665
[2025-11-24 23:25:14] 2025-11-25 04:24:16,126 | INFO     | mean x: 1764002888.707816
[2025-11-24 23:25:14] 2025-11-25 04:24:16,126 | INFO     | mean y: 3067290.171658145
[2025-11-24 23:25:14] 2025-11-25 04:24:16,126 | INFO     | intersect: -11828105934.395266
[2025-11-24 23:25:14] 2025-11-25 04:24:16,132 | INFO     | chi2: 14.460250973374032
[2025-11-24 23:25:14] 2025-11-25 04:24:16,132 | INFO     | current chi2=14.460250973374032 (change=23.312657871250224 %)
[2025-11-24 23:25:14] 2025-11-25 04:24:16,132 | INFO     | left removable region: 10
[2025-11-24 23:25:14] 2025-11-25 04:24:16,134 | INFO     | sum of square deviations: 776420563650.1741
[2025-11-24 23:25:14] 2025-11-25 04:24:16,204 | INFO     | sum of deviations: 5404156922984.224
[2025-11-24 23:25:14] 2025-11-25 04:24:16,209 | INFO     | mean x: 1764002858.2378497
[2025-11-24 23:25:14] 2025-11-25 04:24:16,209 | INFO     | mean y: 3086659.1045655375
[2025-11-24 23:25:14] 2025-11-25 04:24:16,209 | INFO     | intersect: -12274986211.213205
[2025-11-24 23:25:14] 2025-11-25 04:24:16,210 | INFO     | chi2: 7.483000283088132
[2025-11-24 23:25:14] 2025-11-25 04:24:16,211 | INFO     | current memory leak: 6.96 B/s (using 1358 data points, chi2=7.48)
[2025-11-24 23:25:14] 2025-11-25 04:24:16,212 | INFO     | could have reported an average CPU frequency of 2851 MHz (49 samples)
[2025-11-24 23:25:14] 2025-11-25 04:24:16,212 | INFO     | ..............................
[2025-11-24 23:25:14] 2025-11-25 04:24:16,212 | INFO     | . Timing measurements:
[2025-11-24 23:25:14] 2025-11-25 04:24:16,216 | INFO     | . get job = 1 s
[2025-11-24 23:25:14] 2025-11-25 04:24:16,216 | INFO     | . initial setup = 16 s
[2025-11-24 23:25:14] 2025-11-25 04:24:16,217 | INFO     | . payload setup = 54 s
[2025-11-24 23:25:14] 2025-11-25 04:24:16,217 | INFO     | . stage-in = 0 s
[2025-11-24 23:25:14] 2025-11-25 04:24:16,217 | INFO     | . payload execution = 83803 s
[2025-11-24 23:25:14] 2025-11-25 04:24:16,217 | INFO     | . stage-out = 6 s
[2025-11-24 23:25:14] 2025-11-25 04:24:16,217 | INFO     | . log creation = 1 s
[2025-11-24 23:25:14] 2025-11-25 04:24:16,217 | INFO     | ..............................
[2025-11-24 23:25:14] 2025-11-25 04:24:16,387 | INFO     | 
[2025-11-24 23:25:14] 2025-11-25 04:24:16,387 | INFO     | job summary report
[2025-11-24 23:25:14] 2025-11-25 04:24:16,387 | INFO     | --------------------------------------------------
[2025-11-24 23:25:14] 2025-11-25 04:24:16,387 | INFO     | PanDA job id: 6895356206
[2025-11-24 23:25:14] 2025-11-25 04:24:16,387 | INFO     | task id: 47556137
[2025-11-24 23:25:14] 2025-11-25 04:24:16,387 | INFO     | errors: (none)
[2025-11-24 23:25:14] 2025-11-25 04:24:16,387 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 23:25:14] 2025-11-25 04:24:16,387 | INFO     | pilot state: finished 
[2025-11-24 23:25:14] 2025-11-25 04:24:16,387 | INFO     | transexitcode: 0
[2025-11-24 23:25:14] 2025-11-25 04:24:16,387 | INFO     | exeerrorcode: 0
[2025-11-24 23:25:14] 2025-11-25 04:24:16,388 | INFO     | exeerrordiag: 
[2025-11-24 23:25:14] 2025-11-25 04:24:16,388 | INFO     | exitcode: 0
[2025-11-24 23:25:14] 2025-11-25 04:24:16,388 | INFO     | exitmsg: OK
[2025-11-24 23:25:14] 2025-11-25 04:24:16,388 | INFO     | cpuconsumptiontime: 242174 s
[2025-11-24 23:25:14] 2025-11-25 04:24:16,388 | INFO     | nevents: 1000
[2025-11-24 23:25:14] 2025-11-25 04:24:16,388 | INFO     | neventsw: 0
[2025-11-24 23:25:14] 2025-11-25 04:24:16,388 | INFO     | pid: 693640
[2025-11-24 23:25:14] 2025-11-25 04:24:16,388 | INFO     | pgrp: 693640
[2025-11-24 23:25:14] 2025-11-25 04:24:16,388 | INFO     | corecount: 9
[2025-11-24 23:25:14] 2025-11-25 04:24:16,388 | INFO     | event service: False
[2025-11-24 23:25:14] 2025-11-25 04:24:16,388 | INFO     | sizes: {0: 2297928, 1: 2298529, 2: 2298613, 4: 2298669, 5: 2298669, 6: 2298868, 7: 2299024, 18: 2299052, 31: 2299080, 43: 2299108, 45: 2299398, 54: 2299706, 83861:
[2025-11-24 23:25:14] 2025-11-25 04:24:16,388 | INFO     | --------------------------------------------------
[2025-11-24 23:25:14] 2025-11-25 04:24:16,388 | INFO     | 
[2025-11-24 23:25:14] 2025-11-25 04:24:16,388 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 23:25:14] 2025-11-25 04:24:16,604 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 23:25:14] 2025-11-25 04:24:16,604 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 23:25:14] 2025-11-25 04:24:16,604 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 23:25:14] 2025-11-25 04:24:16,605 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 23:25:14] 2025-11-25 04:24:16,605 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 23:25:14] 2025-11-25 04:24:16,605 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 23:25:14] 2025-11-25 04:24:16,605 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 23:25:14] 2025-11-25 04:24:16,605 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 23:25:14] 2025-11-25 04:24:16,605 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 23:25:14] 2025-11-25 04:24:16,605 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 23:25:14] 2025-11-25 04:24:16,605 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 23:25:14] 2025-11-25 04:24:16,605 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 23:25:14] 2025-11-25 04:24:16,605 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 23:25:14] 2025-11-25 04:24:16,605 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 23:25:14] 2025-11-25 04:24:16,605 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 23:25:14] 2025-11-25 04:24:16,606 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 23:25:14] 2025-11-25 04:24:16,606 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 23:25:14] 2025-11-25 04:24:16,606 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 23:25:14] 2025-11-25 04:24:16,606 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 23:25:14] 2025-11-25 04:24:16,606 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 23:25:14] 2025-11-25 04:24:16,606 | INFO     | job 6895356206 has completed (purged errors)
[2025-11-24 23:25:14] 2025-11-25 04:24:16,607 | INFO     | overall cleanup function is called
[2025-11-24 23:25:14] 2025-11-25 04:24:17,668 | INFO     | --- collectZombieJob: --- 10, [693640]
[2025-11-24 23:25:14] 2025-11-25 04:24:17,668 | INFO     | zombie collector waiting for pid 693640
[2025-11-24 23:25:14] 2025-11-25 04:24:17,669 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 23:25:14] 2025-11-25 04:24:17,669 | INFO     | collected zombie processes
[2025-11-24 23:25:14] 2025-11-25 04:24:17,669 | INFO     | will attempt to kill all subprocesses of pid=693640
[2025-11-24 23:25:14] 2025-11-25 04:24:18,645 | INFO     | process IDs to be killed: [693640] (in reverse order)
[2025-11-24 23:25:14] 2025-11-25 04:24:18,844 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 23:25:14] 2025-11-25 04:24:18,844 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 23:25:14] 2025-11-25 04:24:18,879 | INFO     | did not find any defunct processes belonging to 693640
[2025-11-24 23:25:14] 2025-11-25 04:24:18,897 | INFO     | did not find any defunct processes belonging to 693640
[2025-11-24 23:25:14] 2025-11-25 04:24:18,900 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 23:25:14] 2025-11-25 04:24:18,900 | INFO     | ready for new job
[2025-11-24 23:25:14] 2025-11-25 04:24:18,900 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 23:25:14] 2025-11-25 04:24:18,908 | INFO     | ***************************************
[2025-11-24 23:25:14] 2025-11-25 04:24:18,908 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 23:25:14] 2025-11-25 04:24:18,909 | INFO     | ***************************************
[2025-11-24 23:25:14] 2025-11-25 04:24:18,909 | INFO     | 
[2025-11-24 23:25:14] 2025-11-25 04:24:18,913 | INFO     | architecture information:
[2025-11-24 23:25:14] 2025-11-25 04:24:18,914 | INFO     | executing command: cat /etc/os-release
[2025-11-24 23:25:14] 2025-11-25 04:24:18,942 | INFO     | cat /etc/os-release:
[2025-11-24 23:25:14] NAME="CentOS Linux"
[2025-11-24 23:25:14] VERSION="7 (Core)"
[2025-11-24 23:25:14] ID="centos"
[2025-11-24 23:25:14] ID_LIKE="rhel fedora"
[2025-11-24 23:25:14] VERSION_ID="7"
[2025-11-24 23:25:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 23:25:14] ANSI_COLOR="0;31"
[2025-11-24 23:25:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 23:25:14] HOME_URL="https://www.centos.org/"
[2025-11-24 23:25:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 23:25:14] 
[2025-11-24 23:25:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 23:25:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 23:25:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 23:25:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 23:25:14] 
[2025-11-24 23:25:14] 2025-11-25 04:24:18,942 | INFO     | ***************************************
[2025-11-24 23:25:14] 2025-11-25 04:24:19,447 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 23:25:14] 2025-11-25 04:24:19,488 | INFO     | sufficient remaining disk space (71217184768 B)
[2025-11-24 23:25:14] 2025-11-25 04:24:19,488 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 23:25:14] 2025-11-25 04:24:19,489 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 23:25:14] 2025-11-25 04:24:19,489 | INFO     | update_server=False
[2025-11-24 23:25:14] 2025-11-25 04:24:19,489 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 23:25:14] 2025-11-25 04:24:19,489 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:25:14] 2025-11-25 04:24:19,489 | INFO     | aborting loop
[2025-11-24 23:25:14] 2025-11-25 04:24:20,025 | INFO     | all job control threads have been joined
[2025-11-24 23:25:14] 2025-11-25 04:24:20,211 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 23:25:14] 2025-11-25 04:24:20,322 | INFO     | all data control threads have been joined
[2025-11-24 23:25:14] 2025-11-25 04:24:20,350 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 23:25:14] 2025-11-25 04:24:20,461 | INFO     | all payload control threads have been joined
[2025-11-24 23:25:14] 2025-11-25 04:24:20,494 | INFO     | [job] retrieve thread has finished
[2025-11-24 23:25:14] 2025-11-25 04:24:20,498 | INFO     | [job] job monitor thread has finished
[2025-11-24 23:25:14] 2025-11-25 04:24:20,508 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 23:25:14] 2025-11-25 04:24:21,036 | INFO     | [job] control thread has finished
[2025-11-24 23:25:14] 2025-11-25 04:24:21,289 | INFO     | [payload] validate_post thread has finished
[2025-11-24 23:25:14] 2025-11-25 04:24:21,333 | INFO     | [data] control thread has finished
[2025-11-24 23:25:14] 2025-11-25 04:24:21,432 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:25:14] 2025-11-25 04:24:21,456 | INFO     | [data] copytool_in thread has finished
[2025-11-24 23:25:14] 2025-11-25 04:24:21,457 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 23:25:14] 2025-11-25 04:24:21,467 | INFO     | [payload] control thread has finished
[2025-11-24 23:25:14] 2025-11-25 04:24:21,474 | INFO     | [payload] failed_post thread has finished
[2025-11-24 23:25:14] 2025-11-25 04:24:21,751 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 23:25:14] 2025-11-25 04:24:21,846 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 23:25:14] 2025-11-25 04:24:21,884 | INFO     | [job] validate thread has finished
[2025-11-24 23:25:14] 2025-11-25 04:24:22,357 | INFO     | [data] copytool_out thread has finished
[2025-11-24 23:25:14] 2025-11-25 04:24:22,471 | INFO     | [job] queue monitor thread has finished
[2025-11-24 23:25:14] 2025-11-25 04:24:24,221 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 23:25:14] 2025-11-25 04:24:49,983 | INFO     | PID=674747 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 23:25:14] 2025-11-25 04:24:49,983 | INFO     | .. there are 24 such processes running
[2025-11-24 23:25:14] 2025-11-25 04:24:49,988 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 23:25:14] 2025-11-25 04:24:49,989 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 23:25:14] 2025-11-25 04:24:49,989 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 23:25:14] 2025-11-25 04:25:08,799 | INFO     | [monitor] cgroup control has ended
[2025-11-24 23:25:14] 2025-11-25 04:25:09,046 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140394284541760)>', '<ExcThread(monitor, started 140393781896960)>']
[2025-11-24 23:25:14] 2025-11-25 04:25:09,100 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 23:25:14] 2025-11-25 04:25:09,101 | INFO     | [monitor] control thread has ended
[2025-11-24 23:25:14] 2025-11-25 04:25:14,073 | INFO     | all workflow threads have been joined
[2025-11-24 23:25:14] 2025-11-25 04:25:14,074 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 23:25:14] 2025-11-25 04:25:14,074 | INFO     | traces error code: 0
[2025-11-24 23:25:14] 2025-11-25 04:25:14,074 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 23:25:14] 2025-11-25 04:25:14,364 [wrapper] ==== pilot stdout END ====
[2025-11-24 23:25:14] 2025-11-25 04:25:14,368 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 23:25:14] 2025-11-25 04:25:14,395 [wrapper] pilotpid: 674747
[2025-11-24 23:25:14] 2025-11-25 04:25:14,399 [wrapper] Pilot exit status: 0
[2025-11-24 23:25:14] 2025-11-25 04:25:14,443 [wrapper] pandaids: 6895356206
[2025-11-24 23:25:14] 2025-11-25 04:25:14,654 [wrapper] cleanup supervisor_pilot  598589 674748
[2025-11-24 23:25:14] 2025-11-25 04:25:14,659 [wrapper] Test setup, not cleaning
[2025-11-24 23:25:14] 2025-11-25 04:25:14,664 [wrapper] apfmon messages muted
[2025-11-24 23:25:14] 2025-11-25 04:25:14,668 [wrapper] ==== wrapper stdout END ====
[2025-11-24 23:25:14] 2025-11-25 04:25:14,673 [wrapper] ==== wrapper stderr END ====
[2025-11-24 23:25:14]  *** Error codes and diagnostics ***
[2025-11-24 23:25:14]     "exeErrorCode": 0,
[2025-11-24 23:25:14]     "exeErrorDiag": "",
[2025-11-24 23:25:14]     "pilotErrorCode": 0,
[2025-11-24 23:25:14]     "pilotErrorDiag": "",
[2025-11-24 23:25:14]  *** Listing of results directory ***
[2025-11-24 23:25:14] total 1331196
[2025-11-24 23:25:14] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 05:16 pilot3.tar.gz
[2025-11-24 23:25:14] -rwx------. 1 boincer umatlas     36292 Nov 23 05:37 runpilot2-wrapper.sh
[2025-11-24 23:25:14] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 05:37 queuedata.json
[2025-11-24 23:25:14] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 23:25:14] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:03 run_atlas
[2025-11-24 23:25:14] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:03 job.xml
[2025-11-24 23:25:14] -rw-r--r--. 2 boincer umatlas 408013443 Nov 24 00:03 EVNT.47483658._000691.pool.root.1
[2025-11-24 23:25:14] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:03 shared
[2025-11-24 23:25:14] -rw-r--r--. 2 boincer umatlas    590099 Nov 24 00:03 input.tar.gz
[2025-11-24 23:25:14] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:03 start_atlas.sh
[2025-11-24 23:25:14] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:03 boinc_lockfile
[2025-11-24 23:25:14] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 00:03 pandaJob.out
[2025-11-24 23:25:14] -rw-------. 1 boincer umatlas        57 Nov 24 00:03 setup.sh.local
[2025-11-24 23:25:14] -rw-------. 1 boincer umatlas    989786 Nov 24 00:04 agis_schedconf.cvmfs.json
[2025-11-24 23:25:14] drwx------. 5 boincer umatlas      4096 Nov 24 00:04 pilot3
[2025-11-24 23:25:14] -rw-r--r--. 1 boincer umatlas       533 Nov 24 23:03 boinc_task_state.xml
[2025-11-24 23:25:14] -rw-r--r--. 1 boincer umatlas      6845 Nov 24 23:21 init_data.xml
[2025-11-24 23:25:14] -rw-------. 1 boincer umatlas 925137749 Nov 24 23:22 HITS.47556137._006867.pool.root.1
[2025-11-24 23:25:14] -rw-------. 1 boincer umatlas      1058 Nov 24 23:23 memory_monitor_summary.json
[2025-11-24 23:25:14] -rw-------. 1 boincer umatlas   1516227 Nov 24 23:23 agis_ddmendpoints.agis.ALL.json
[2025-11-24 23:25:14] -rw-------. 1 boincer umatlas   2522245 Nov 24 23:23 log.47556137._006867.job.log.tgz.1
[2025-11-24 23:25:14] -rw-------. 1 boincer umatlas      8631 Nov 24 23:24 heartbeat.json
[2025-11-24 23:25:14] -rw-------. 1 boincer umatlas        95 Nov 24 23:24 pilot_heartbeat.json
[2025-11-24 23:25:14] -rw-------. 1 boincer umatlas      4823 Nov 24 23:25 pilotlog.txt
[2025-11-24 23:25:14] -rw-------. 1 boincer umatlas  10516648 Nov 24 23:25 log.47556137._006867.job.log.1
[2025-11-24 23:25:14] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 23:25 boinc_mmap_file
[2025-11-24 23:25:14] -rw-------. 1 boincer umatlas       353 Nov 24 23:25 output.list
[2025-11-24 23:25:14] -rw-r--r--. 1 boincer umatlas       620 Nov 24 23:25 runtime_log
[2025-11-24 23:25:14] -rw-------. 1 boincer umatlas  13056000 Nov 24 23:25 result.tar.gz
[2025-11-24 23:25:14] -rw-r--r--. 1 boincer umatlas        29 Nov 24 23:25 wrapper_checkpoint.txt
[2025-11-24 23:25:14] -rw-------. 1 boincer umatlas       662 Nov 24 23:25 wMJNDmwdMh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGVIKDmAkIdsm.diag
[2025-11-24 23:25:14] -rw-r--r--. 1 boincer umatlas      9348 Nov 24 23:25 runtime_log.err
[2025-11-24 23:25:14] -rw-r--r--. 1 boincer umatlas     21806 Nov 24 23:25 stderr.txt
[2025-11-24 23:25:14] HITS file was successfully produced:
[2025-11-24 23:25:14] -rw-------. 1 boincer umatlas 925137749 Nov 24 23:22 shared/HITS.pool.root.1
[2025-11-24 23:25:14]  *** Contents of shared directory: ***
[2025-11-24 23:25:14] total 1315264
[2025-11-24 23:25:14] -rw-r--r--. 2 boincer umatlas 408013443 Nov 24 00:03 ATLAS.root_0
[2025-11-24 23:25:14] -rw-r--r--. 2 boincer umatlas    590099 Nov 24 00:03 input.tar.gz
[2025-11-24 23:25:14] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:03 start_atlas.sh
[2025-11-24 23:25:14] -rw-------. 1 boincer umatlas 925137749 Nov 24 23:22 HITS.pool.root.1
[2025-11-24 23:25:14] -rw-------. 1 boincer umatlas  13056000 Nov 24 23:25 result.tar.gz
23:25:16 (667743): run_atlas exited; CPU time 243480.939884
23:25:16 (667743): called boinc_finish(0)

</stderr_txt>
]]>

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