Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:12:59 (194983): wrapper (7.7.26015): starting
01:12:59 (194983): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 01:12:59] Arguments: --nthreads 8
[2025-11-25 01:12:59] Threads: 8
[2025-11-25 01:12:59] Checking for CVMFS
[2025-11-25 01:12:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 01:13:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 01:13:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 01:13:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 01:13:01] 2.13.2.0 7693 31954 176268 153272 2 305 38241240 39288832 8487 16776704 0 27584232 99.633 24962107 31520 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 01:13:01] CVMFS is ok
[2025-11-25 01:13:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 01:13:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 01:13:01] Further information can be found at the LHC@home message board.
[2025-11-25 01:13:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 01:13:01] Checking for apptainer binary...
[2025-11-25 01:13:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 01:13:01] Running /usr/bin/apptainer --version
[2025-11-25 01:13:01] apptainer version 1.4.4-1.el9
[2025-11-25 01:13:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 01:13:02] c-210-18.aglt2.org
[2025-11-25 01:13:02] apptainer works
[2025-11-25 01:13:02] Set ATHENA_PROC_NUMBER=8
[2025-11-25 01:13:02] Set ATHENA_CORE_NUMBER=8
[2025-11-25 01:13:02] Starting ATLAS job with PandaID=6895368215
[2025-11-25 01:13:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 22:18:51]  *** The last 200 lines of the pilot log: ***
[2025-11-26 22:18:51] 2025-11-27 03:17:30,626 | INFO     | monitor loop #9522: job 0:6895368215 is in state 'finished'
[2025-11-26 22:18:51] 2025-11-27 03:17:30,626 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:18:51] 2025-11-27 03:17:30,942 | INFO     | PID=200295 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 22:18:51] 2025-11-27 03:17:30,942 | INFO     | .. there are 7 such processes running
[2025-11-26 22:18:51] 2025-11-27 03:17:31,946 | INFO     | time since job start (162183s) is within the limit (172800.0s)
[2025-11-26 22:18:51] 2025-11-27 03:17:33,138 | INFO     | monitor loop #9523: job 0:6895368215 is in state 'finished'
[2025-11-26 22:18:51] 2025-11-27 03:17:33,192 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:18:51] 2025-11-27 03:17:33,434 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 22:18:51] 2025-11-27 03:17:33,442 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.98885
[2025-11-26 22:18:51] 2025-11-27 03:17:33,449 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895368215/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 22:18:51] 2025-11-27 03:17:33,450 | INFO     | extracted standard info from prmon json
[2025-11-26 22:18:51] 2025-11-27 03:17:33,450 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 22:18:51] 2025-11-27 03:17:33,450 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 22:18:51] 2025-11-27 03:17:34,008 | INFO     | time since job start (162186s) is within the limit (172800.0s)
[2025-11-26 22:18:51] 2025-11-27 03:17:34,015 | INFO     | fitting pss+swap vs Time
[2025-11-26 22:18:51] 2025-11-27 03:17:34,041 | INFO     | sum of square deviations: 5803480837147.886
[2025-11-26 22:18:51] 2025-11-27 03:17:35,562 | INFO     | sum of deviations: 13016559628365.125
[2025-11-26 22:18:51] 2025-11-27 03:17:35,563 | INFO     | mean x: 1764132399.9932203
[2025-11-26 22:18:51] 2025-11-27 03:17:35,563 | INFO     | mean y: 2944558.3374764593
[2025-11-26 22:18:51] 2025-11-27 03:17:35,563 | INFO     | intersect: -3953807470.5238338
[2025-11-26 22:18:51] 2025-11-27 03:17:35,571 | INFO     | chi2: 29.165504988158087
[2025-11-26 22:18:51] 2025-11-27 03:17:35,579 | INFO     | sum of square deviations: 5770761430440.398
[2025-11-26 22:18:51] 2025-11-27 03:17:35,739 | INFO     | monitor loop #9524: job 0:6895368215 is in state 'finished'
[2025-11-26 22:18:51] 2025-11-27 03:17:35,740 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:18:51] 2025-11-27 03:17:36,222 | INFO     | time since job start (162188s) is within the limit (172800.0s)
[2025-11-26 22:18:51] 2025-11-27 03:17:37,151 | INFO     | sum of deviations: 13985961183702.674
[2025-11-26 22:18:51] 2025-11-27 03:17:37,152 | INFO     | mean x: 1764132247.5064151
[2025-11-26 22:18:51] 2025-11-27 03:17:37,152 | INFO     | mean y: 2949075.7558490564
[2025-11-26 22:18:51] 2025-11-27 03:17:37,152 | INFO     | intersect: -4272584653.0158744
[2025-11-26 22:18:51] 2025-11-27 03:17:37,188 | INFO     | chi2: 25.529435369002815
[2025-11-26 22:18:51] 2025-11-27 03:17:37,188 | INFO     | current chi2=25.529435369002815 (change=12.467020957228774 %)
[2025-11-26 22:18:51] 2025-11-27 03:17:37,188 | INFO     | right removable region: 2649
[2025-11-26 22:18:51] 2025-11-27 03:17:37,234 | INFO     | sum of square deviations: 5770750104570.39
[2025-11-26 22:18:51] 2025-11-27 03:17:38,238 | INFO     | time since job start (162190s) is within the limit (172800.0s)
[2025-11-26 22:18:51] 2025-11-27 03:17:38,413 | INFO     | monitor loop #9525: job 0:6895368215 is in state 'finished'
[2025-11-26 22:18:51] 2025-11-27 03:17:38,414 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 22:18:51] 2025-11-27 03:17:38,882 | INFO     | sum of deviations: 11911915411922.223
[2025-11-26 22:18:51] 2025-11-27 03:17:38,882 | INFO     | mean x: 1764132552.5064151
[2025-11-26 22:18:51] 2025-11-27 03:17:38,930 | INFO     | mean y: 2949705.2203773586
[2025-11-26 22:18:51] 2025-11-27 03:17:38,931 | INFO     | intersect: -3638552241.681079
[2025-11-26 22:18:51] 2025-11-27 03:17:38,949 | INFO     | chi2: 24.96111147857517
[2025-11-26 22:18:51] 2025-11-27 03:17:38,950 | INFO     | current chi2=24.96111147857517 (change=14.415637621532715 %)
[2025-11-26 22:18:51] 2025-11-27 03:17:38,950 | INFO     | left removable region: 10
[2025-11-26 22:18:51] 2025-11-27 03:17:38,953 | INFO     | sum of square deviations: 5699189625092.653
[2025-11-26 22:18:51] 2025-11-27 03:17:39,735 | INFO     | sum of deviations: 12163683022865.555
[2025-11-26 22:18:51] 2025-11-27 03:17:39,751 | INFO     | mean x: 1764132522.0356195
[2025-11-26 22:18:51] 2025-11-27 03:17:39,751 | INFO     | mean y: 2959160.0583554376
[2025-11-26 22:18:51] 2025-11-27 03:17:39,751 | INFO     | intersect: -3762198734.301197
[2025-11-26 22:18:51] 2025-11-27 03:17:39,782 | INFO     | chi2: 18.142599289086462
[2025-11-26 22:18:51] 2025-11-27 03:17:39,783 | INFO     | current memory leak: 2.13 B/s (using 2639 data points, chi2=18.14)
[2025-11-26 22:18:51] 2025-11-27 03:17:39,831 | INFO     | could have reported an average CPU frequency of 2599 MHz (91 samples)
[2025-11-26 22:18:51] 2025-11-27 03:17:39,832 | INFO     | ..............................
[2025-11-26 22:18:51] 2025-11-27 03:17:39,832 | INFO     | . Timing measurements:
[2025-11-26 22:18:51] 2025-11-27 03:17:39,832 | INFO     | . get job = 1 s
[2025-11-26 22:18:51] 2025-11-27 03:17:39,832 | INFO     | . initial setup = 10 s
[2025-11-26 22:18:51] 2025-11-27 03:17:39,832 | INFO     | . payload setup = 58 s
[2025-11-26 22:18:51] 2025-11-27 03:17:39,832 | INFO     | . stage-in = 0 s
[2025-11-26 22:18:51] 2025-11-27 03:17:39,832 | INFO     | . payload execution = 161975 s
[2025-11-26 22:18:51] 2025-11-27 03:17:39,832 | INFO     | . stage-out = 16 s
[2025-11-26 22:18:51] 2025-11-27 03:17:39,832 | INFO     | . log creation = 6 s
[2025-11-26 22:18:51] 2025-11-27 03:17:39,832 | INFO     | ..............................
[2025-11-26 22:18:51] 2025-11-27 03:17:40,388 | INFO     | time since job start (162192s) is within the limit (172800.0s)
[2025-11-26 22:18:51] 2025-11-27 03:17:40,848 | INFO     | 
[2025-11-26 22:18:51] 2025-11-27 03:17:40,849 | INFO     | job summary report
[2025-11-26 22:18:51] 2025-11-27 03:17:40,849 | INFO     | --------------------------------------------------
[2025-11-26 22:18:51] 2025-11-27 03:17:40,849 | INFO     | PanDA job id: 6895368215
[2025-11-26 22:18:51] 2025-11-27 03:17:40,849 | INFO     | task id: 47556137
[2025-11-26 22:18:51] 2025-11-27 03:17:40,849 | INFO     | errors: (none)
[2025-11-26 22:18:51] 2025-11-27 03:17:40,849 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 22:18:51] 2025-11-27 03:17:40,849 | INFO     | pilot state: finished 
[2025-11-26 22:18:51] 2025-11-27 03:17:40,849 | INFO     | transexitcode: 0
[2025-11-26 22:18:51] 2025-11-27 03:17:40,849 | INFO     | exeerrorcode: 0
[2025-11-26 22:18:51] 2025-11-27 03:17:40,850 | INFO     | exeerrordiag: 
[2025-11-26 22:18:51] 2025-11-27 03:17:40,850 | INFO     | exitcode: 0
[2025-11-26 22:18:51] 2025-11-27 03:17:40,850 | INFO     | exitmsg: OK
[2025-11-26 22:18:51] 2025-11-27 03:17:40,850 | INFO     | cpuconsumptiontime: 309519 s
[2025-11-26 22:18:51] 2025-11-27 03:17:40,850 | INFO     | nevents: 1000
[2025-11-26 22:18:51] 2025-11-27 03:17:40,850 | INFO     | neventsw: 0
[2025-11-26 22:18:51] 2025-11-27 03:17:40,850 | INFO     | pid: 207981
[2025-11-26 22:18:51] 2025-11-27 03:17:40,850 | INFO     | pgrp: 207981
[2025-11-26 22:18:51] 2025-11-27 03:17:40,850 | INFO     | corecount: 8
[2025-11-26 22:18:51] 2025-11-27 03:17:40,850 | INFO     | event service: False
[2025-11-26 22:18:51] 2025-11-27 03:17:40,851 | INFO     | sizes: {0: 2284032, 1: 2284287, 2: 2284315, 13: 2284315, 24: 2284371, 35: 2284399, 38: 2284817, 46: 2284845, 162038: 2382366, 162056: 2391365, 162057: 2391421, 162
[2025-11-26 22:18:51] 2025-11-27 03:17:40,851 | INFO     | --------------------------------------------------
[2025-11-26 22:18:51] 2025-11-27 03:17:40,851 | INFO     | 
[2025-11-26 22:18:51] 2025-11-27 03:17:40,851 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 22:18:51] 2025-11-27 03:17:40,970 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 22:18:51] 2025-11-27 03:17:40,970 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 22:18:51] 2025-11-27 03:17:40,971 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 22:18:51] 2025-11-27 03:17:40,971 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 22:18:51] 2025-11-27 03:17:40,971 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 22:18:51] 2025-11-27 03:17:40,971 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 22:18:51] 2025-11-27 03:17:40,971 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 22:18:51] 2025-11-27 03:17:40,971 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 22:18:51] 2025-11-27 03:17:40,971 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 22:18:51] 2025-11-27 03:17:40,971 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 22:18:51] 2025-11-27 03:17:40,972 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 22:18:51] 2025-11-27 03:17:40,972 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 22:18:51] 2025-11-27 03:17:40,972 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 22:18:51] 2025-11-27 03:17:40,972 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 22:18:51] 2025-11-27 03:17:40,972 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 22:18:51] 2025-11-27 03:17:40,972 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 22:18:51] 2025-11-27 03:17:40,972 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 22:18:51] 2025-11-27 03:17:40,972 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 22:18:51] 2025-11-27 03:17:40,972 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 22:18:51] 2025-11-27 03:17:40,973 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 22:18:51] 2025-11-27 03:17:40,973 | INFO     | job 6895368215 has completed (purged errors)
[2025-11-26 22:18:51] 2025-11-27 03:17:40,974 | INFO     | overall cleanup function is called
[2025-11-26 22:18:51] 2025-11-27 03:17:42,095 | INFO     | --- collectZombieJob: --- 10, [207981]
[2025-11-26 22:18:51] 2025-11-27 03:17:42,096 | INFO     | zombie collector waiting for pid 207981
[2025-11-26 22:18:51] 2025-11-27 03:17:42,096 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 22:18:51] 2025-11-27 03:17:42,096 | INFO     | collected zombie processes
[2025-11-26 22:18:51] 2025-11-27 03:17:42,096 | INFO     | will attempt to kill all subprocesses of pid=207981
[2025-11-26 22:18:51] 2025-11-27 03:17:44,033 | INFO     | process IDs to be killed: [207981] (in reverse order)
[2025-11-26 22:18:51] 2025-11-27 03:17:44,711 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 22:18:51] 2025-11-27 03:17:44,712 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 22:18:51] 2025-11-27 03:17:44,771 | INFO     | did not find any defunct processes belonging to 207981
[2025-11-26 22:18:51] 2025-11-27 03:17:44,866 | INFO     | did not find any defunct processes belonging to 207981
[2025-11-26 22:18:51] 2025-11-27 03:17:44,903 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 22:18:51] 2025-11-27 03:17:44,903 | INFO     | ready for new job
[2025-11-26 22:18:51] 2025-11-27 03:17:44,903 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 22:18:51] 2025-11-27 03:17:45,009 | INFO     | ***************************************
[2025-11-26 22:18:51] 2025-11-27 03:17:45,010 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 22:18:51] 2025-11-27 03:17:45,010 | INFO     | ***************************************
[2025-11-26 22:18:51] 2025-11-27 03:17:45,010 | INFO     | 
[2025-11-26 22:18:51] 2025-11-27 03:17:45,012 | INFO     | architecture information:
[2025-11-26 22:18:51] 2025-11-27 03:17:45,044 | INFO     | executing command: cat /etc/os-release
[2025-11-26 22:18:51] 2025-11-27 03:17:45,228 | INFO     | cat /etc/os-release:
[2025-11-26 22:18:51] NAME="CentOS Linux"
[2025-11-26 22:18:51] VERSION="7 (Core)"
[2025-11-26 22:18:51] ID="centos"
[2025-11-26 22:18:51] ID_LIKE="rhel fedora"
[2025-11-26 22:18:51] VERSION_ID="7"
[2025-11-26 22:18:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 22:18:51] ANSI_COLOR="0;31"
[2025-11-26 22:18:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 22:18:51] HOME_URL="https://www.centos.org/"
[2025-11-26 22:18:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 22:18:51] 
[2025-11-26 22:18:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 22:18:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 22:18:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 22:18:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 22:18:51] 
[2025-11-26 22:18:51] 2025-11-27 03:17:45,228 | INFO     | ***************************************
[2025-11-26 22:18:51] 2025-11-27 03:17:45,731 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 22:18:51] 2025-11-27 03:17:45,796 | INFO     | sufficient remaining disk space (50654609408 B)
[2025-11-26 22:18:51] 2025-11-27 03:17:45,796 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 22:18:51] 2025-11-27 03:17:45,796 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 22:18:51] 2025-11-27 03:17:45,797 | INFO     | update_server=False
[2025-11-26 22:18:51] 2025-11-27 03:17:45,797 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 22:18:51] 2025-11-27 03:17:45,821 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 22:18:51] 2025-11-27 03:17:45,994 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:18:51] 2025-11-27 03:17:46,055 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 22:18:51] 2025-11-27 03:17:46,056 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 22:18:51] 2025-11-27 03:17:46,056 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:18:51] 2025-11-27 03:17:46,056 | INFO     | will abort loop
[2025-11-26 22:18:51] 2025-11-27 03:17:46,298 | INFO     | all data control threads have been joined
[2025-11-26 22:18:51] 2025-11-27 03:17:46,549 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 22:18:51] 2025-11-27 03:17:46,802 | INFO     | [job] retrieve thread has finished
[2025-11-26 22:18:51] 2025-11-27 03:17:46,990 | INFO     | [payload] validate_post thread has finished
[2025-11-26 22:18:51] 2025-11-27 03:17:47,000 | INFO     | [job] queue monitor thread has finished
[2025-11-26 22:18:51] 2025-11-27 03:17:47,061 | INFO     | [job] job monitor thread has finished
[2025-11-26 22:18:51] 2025-11-27 03:17:47,267 | INFO     | all payload control threads have been joined
[2025-11-26 22:18:51] 2025-11-27 03:17:47,314 | INFO     | [data] control thread has finished
[2025-11-26 22:18:51] 2025-11-27 03:17:47,323 | INFO     | [job] validate thread has finished
[2025-11-26 22:18:51] 2025-11-27 03:17:47,399 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 22:18:51] 2025-11-27 03:17:47,414 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 22:18:51] 2025-11-27 03:17:47,538 | INFO     | all job control threads have been joined
[2025-11-26 22:18:51] 2025-11-27 03:17:47,556 | INFO     | [data] copytool_in thread has finished
[2025-11-26 22:18:51] 2025-11-27 03:17:47,787 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 22:18:51] 2025-11-27 03:17:47,962 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 22:18:51] 2025-11-27 03:17:48,277 | INFO     | [payload] control thread has finished
[2025-11-26 22:18:51] 2025-11-27 03:17:48,284 | INFO     | [payload] failed_post thread has finished
[2025-11-26 22:18:51] 2025-11-27 03:17:48,549 | INFO     | [job] control thread has finished
[2025-11-26 22:18:51] 2025-11-27 03:17:48,556 | INFO     | [data] copytool_out thread has finished
[2025-11-26 22:18:51] 2025-11-27 03:17:49,844 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 22:18:51] 2025-11-27 03:18:16,646 | INFO     | PID=200295 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 22:18:51] 2025-11-27 03:18:16,646 | INFO     | .. there are 7 such processes running
[2025-11-26 22:18:51] 2025-11-27 03:18:16,646 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 22:18:51] 2025-11-27 03:18:16,646 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 22:18:51] 2025-11-27 03:18:16,647 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 22:18:51] 2025-11-27 03:18:41,416 | INFO     | [monitor] cgroup control has ended
[2025-11-26 22:18:51] 2025-11-27 03:18:42,423 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140490172983104)>', '<ExcThread(monitor, started 140489831466752)>']
[2025-11-26 22:18:51] 2025-11-27 03:18:42,874 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 22:18:51] 2025-11-27 03:18:42,875 | INFO     | [monitor] control thread has ended
[2025-11-26 22:18:51] 2025-11-27 03:18:47,450 | INFO     | all workflow threads have been joined
[2025-11-26 22:18:51] 2025-11-27 03:18:47,451 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 22:18:51] 2025-11-27 03:18:47,451 | INFO     | traces error code: 0
[2025-11-26 22:18:51] 2025-11-27 03:18:47,451 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 22:18:51] 2025-11-27 03:18:49,533 [wrapper] ==== pilot stdout END ====
[2025-11-26 22:18:51] 2025-11-27 03:18:49,536 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 22:18:51] 2025-11-27 03:18:49,564 [wrapper] pilotpid: 200295
[2025-11-26 22:18:51] 2025-11-27 03:18:49,640 [wrapper] Pilot exit status: 0
[2025-11-26 22:18:51] 2025-11-27 03:18:49,798 [wrapper] pandaids: 6895368215
[2025-11-26 22:18:51] 2025-11-27 03:18:50,297 [wrapper] cleanup supervisor_pilot  125134 200296
[2025-11-26 22:18:51] 2025-11-27 03:18:50,302 [wrapper] Test setup, not cleaning
[2025-11-26 22:18:51] 2025-11-27 03:18:50,306 [wrapper] apfmon messages muted
[2025-11-26 22:18:51] 2025-11-27 03:18:50,310 [wrapper] ==== wrapper stdout END ====
[2025-11-26 22:18:51] 2025-11-27 03:18:50,313 [wrapper] ==== wrapper stderr END ====
[2025-11-26 22:18:51]  *** Error codes and diagnostics ***
[2025-11-26 22:18:51]     "exeErrorCode": 0,
[2025-11-26 22:18:51]     "exeErrorDiag": "",
[2025-11-26 22:18:51]     "pilotErrorCode": 0,
[2025-11-26 22:18:51]     "pilotErrorDiag": "",
[2025-11-26 22:18:51]  *** Listing of results directory ***
[2025-11-26 22:18:51] total 1355668
[2025-11-26 22:18:51] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 14:32 pilot3.tar.gz
[2025-11-26 22:18:51] -rwx------. 1 boincer umatlas     36292 Nov 23 14:33 runpilot2-wrapper.sh
[2025-11-26 22:18:51] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 14:33 queuedata.json
[2025-11-26 22:18:51] -rw-r--r--. 1 boincer umatlas       100 Nov 25 01:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 22:18:51] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 01:12 run_atlas
[2025-11-26 22:18:51] -rw-r--r--. 1 boincer umatlas       105 Nov 25 01:12 job.xml
[2025-11-26 22:18:51] -rw-r--r--. 2 boincer umatlas 410746683 Nov 25 01:12 EVNT.47483658._000870.pool.root.1
[2025-11-26 22:18:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 01:12 start_atlas.sh
[2025-11-26 22:18:51] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 01:12 shared
[2025-11-26 22:18:51] -rw-r--r--. 2 boincer umatlas    590099 Nov 25 01:12 input.tar.gz
[2025-11-26 22:18:51] -rw-r--r--. 1 boincer umatlas         0 Nov 25 01:12 boinc_lockfile
[2025-11-26 22:18:51] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 01:13 pandaJob.out
[2025-11-26 22:18:51] -rw-------. 1 boincer umatlas        57 Nov 25 01:13 setup.sh.local
[2025-11-26 22:18:51] -rw-------. 1 boincer umatlas    991801 Nov 25 01:14 agis_schedconf.cvmfs.json
[2025-11-26 22:18:51] drwx------. 5 boincer umatlas      4096 Nov 25 01:14 pilot3
[2025-11-26 22:18:51] -rw-r--r--. 1 boincer umatlas       534 Nov 26 21:33 boinc_task_state.xml
[2025-11-26 22:18:51] -rw-r--r--. 1 boincer umatlas      6662 Nov 26 22:09 init_data.xml
[2025-11-26 22:18:51] -rw-------. 1 boincer umatlas 926688392 Nov 26 22:13 HITS.47556137._008564.pool.root.1
[2025-11-26 22:18:51] -rw-------. 1 boincer umatlas      1060 Nov 26 22:16 memory_monitor_summary.json
[2025-11-26 22:18:51] -rw-------. 1 boincer umatlas   1516240 Nov 26 22:16 agis_ddmendpoints.agis.ALL.json
[2025-11-26 22:18:51] -rw-------. 1 boincer umatlas   3313249 Nov 26 22:16 log.47556137._008564.job.log.tgz.1
[2025-11-26 22:18:51] -rw-------. 1 boincer umatlas        95 Nov 26 22:17 pilot_heartbeat.json
[2025-11-26 22:18:51] -rw-------. 1 boincer umatlas      7957 Nov 26 22:17 heartbeat.json
[2025-11-26 22:18:51] -rw-------. 1 boincer umatlas      5008 Nov 26 22:18 pilotlog.txt
[2025-11-26 22:18:51] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 22:18 boinc_mmap_file
[2025-11-26 22:18:51] -rw-------. 1 boincer umatlas  20114886 Nov 26 22:18 log.47556137._008564.job.log.1
[2025-11-26 22:18:51] -rw-------. 1 boincer umatlas       353 Nov 26 22:18 output.list
[2025-11-26 22:18:51] -rw-r--r--. 1 boincer umatlas        30 Nov 26 22:18 wrapper_checkpoint.txt
[2025-11-26 22:18:51] -rw-r--r--. 1 boincer umatlas       620 Nov 26 22:18 runtime_log
[2025-11-26 22:18:51] -rw-------. 1 boincer umatlas  23449600 Nov 26 22:18 result.tar.gz
[2025-11-26 22:18:51] -rw-r--r--. 1 boincer umatlas      9344 Nov 26 22:18 runtime_log.err
[2025-11-26 22:18:51] -rw-------. 1 boincer umatlas       664 Nov 26 22:18 ldWLDmL1Uh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmR9KKDmrQPLKn.diag
[2025-11-26 22:18:51] -rw-r--r--. 1 boincer umatlas     21858 Nov 26 22:18 stderr.txt
[2025-11-26 22:18:52] HITS file was successfully produced:
[2025-11-26 22:18:52] -rw-------. 1 boincer umatlas 926688392 Nov 26 22:13 shared/HITS.pool.root.1
[2025-11-26 22:18:52]  *** Contents of shared directory: ***
[2025-11-26 22:18:52] total 1329592
[2025-11-26 22:18:52] -rw-r--r--. 2 boincer umatlas 410746683 Nov 25 01:12 ATLAS.root_0
[2025-11-26 22:18:52] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 01:12 start_atlas.sh
[2025-11-26 22:18:52] -rw-r--r--. 2 boincer umatlas    590099 Nov 25 01:12 input.tar.gz
[2025-11-26 22:18:52] -rw-------. 1 boincer umatlas 926688392 Nov 26 22:13 HITS.pool.root.1
[2025-11-26 22:18:52] -rw-------. 1 boincer umatlas  23449600 Nov 26 22:18 result.tar.gz
22:18:53 (194983): run_atlas exited; CPU time 312449.876806
22:18:53 (194983): called boinc_finish(0)

</stderr_txt>
]]>

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