Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:37:55 (882728): wrapper (7.7.26015): starting
12:37:55 (882728): wrapper: running run_atlas (--nthreads 10)
[2025-11-24 12:37:55] Arguments: --nthreads 10
[2025-11-24 12:37:55] Threads: 10
[2025-11-24 12:37:55] Checking for CVMFS
[2025-11-24 12:37:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 12:37:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 12:37:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 12:37:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 12:37:56] 2.13.3.0 42195 27339 348220 153254 0 359 23414840 32935937 28500 16776704 0 161266159 99.780 96134025 33445 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 12:37:56] CVMFS is ok
[2025-11-24 12:37:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 12:37:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 12:37:56] Further information can be found at the LHC@home message board.
[2025-11-24 12:37:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 12:37:56] Checking for apptainer binary...
[2025-11-24 12:37:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 12:37:56] Running /usr/bin/apptainer --version
[2025-11-24 12:37:56] apptainer version 1.4.4-1.el9
[2025-11-24 12:37:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 12:37:56] c-6-3.aglt2.org
[2025-11-24 12:37:56] apptainer works
[2025-11-24 12:37:56] Set ATHENA_PROC_NUMBER=10
[2025-11-24 12:37:56] Set ATHENA_CORE_NUMBER=10
[2025-11-24 12:37:56] Starting ATLAS job with PandaID=6895368163
[2025-11-24 12:37:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 06:40:12]  *** The last 200 lines of the pilot log: ***
[2025-11-25 06:40:12] 2025-11-25 11:39:36,689 | INFO     | PID=886918 has CPU usage=20.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 06:40:12] 2025-11-25 11:39:36,689 | INFO     | .. there are 43 such processes running
[2025-11-25 06:40:12] 2025-11-25 11:39:36,774 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 06:40:12] 2025-11-25 11:39:36,781 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2620.173225
[2025-11-25 06:40:12] 2025-11-25 11:39:36,788 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895368163/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 06:40:12] 2025-11-25 11:39:36,789 | INFO     | extracted standard info from prmon json
[2025-11-25 06:40:12] 2025-11-25 11:39:36,789 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 06:40:12] 2025-11-25 11:39:36,789 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 06:40:12] 2025-11-25 11:39:36,810 | INFO     | fitting pss+swap vs Time
[2025-11-25 06:40:12] 2025-11-25 11:39:36,811 | INFO     | sum of square deviations: 372461521315.44904
[2025-11-25 06:40:12] 2025-11-25 11:39:36,842 | INFO     | sum of deviations: 3239926516916.003
[2025-11-25 06:40:12] 2025-11-25 11:39:36,842 | INFO     | mean x: 1764038316.1580434
[2025-11-25 06:40:12] 2025-11-25 11:39:36,842 | INFO     | mean y: 3255468.6190028223
[2025-11-25 06:40:12] 2025-11-25 11:39:36,842 | INFO     | intersect: -15341563231.5543
[2025-11-25 06:40:12] 2025-11-25 11:39:36,844 | INFO     | chi2: 6.90281450369213
[2025-11-25 06:40:12] 2025-11-25 11:39:36,845 | INFO     | sum of square deviations: 367230812636.21155
[2025-11-25 06:40:12] 2025-11-25 11:39:36,876 | INFO     | sum of deviations: 3662972186131.005
[2025-11-25 06:40:12] 2025-11-25 11:39:36,876 | INFO     | mean x: 1764038163.663516
[2025-11-25 06:40:12] 2025-11-25 11:39:36,876 | INFO     | mean y: 3267805.3034026464
[2025-11-25 06:40:12] 2025-11-25 11:39:36,876 | INFO     | intersect: -17592267499.557102
[2025-11-25 06:40:12] 2025-11-25 11:39:36,878 | INFO     | chi2: 3.435462247703634
[2025-11-25 06:40:12] 2025-11-25 11:39:36,878 | INFO     | current chi2=3.435462247703634 (change=50.230992794807136 %)
[2025-11-25 06:40:12] 2025-11-25 11:39:36,880 | INFO     | sum of square deviations: 362049249889.24817
[2025-11-25 06:40:12] 2025-11-25 11:39:36,910 | INFO     | sum of deviations: 3816080805703.4453
[2025-11-25 06:40:12] 2025-11-25 11:39:36,910 | INFO     | mean x: 1764038011.168091
[2025-11-25 06:40:12] 2025-11-25 11:39:36,910 | INFO     | mean y: 3272305.477682811
[2025-11-25 06:40:12] 2025-11-25 11:39:36,910 | INFO     | intersect: -18590086462.726036
[2025-11-25 06:40:12] 2025-11-25 11:39:36,912 | INFO     | chi2: 2.7112232072276856
[2025-11-25 06:40:12] 2025-11-25 11:39:36,912 | INFO     | current chi2=2.7112232072276856 (change=21.081269076964865 %)
[2025-11-25 06:40:12] 2025-11-25 11:39:36,912 | INFO     | right removable region: 1052
[2025-11-25 06:40:12] 2025-11-25 11:39:36,914 | INFO     | sum of square deviations: 367230190924.86194
[2025-11-25 06:40:12] 2025-11-25 11:39:36,944 | INFO     | sum of deviations: 2895759886124.9473
[2025-11-25 06:40:12] 2025-11-25 11:39:36,944 | INFO     | mean x: 1764038468.6616256
[2025-11-25 06:40:12] 2025-11-25 11:39:36,944 | INFO     | mean y: 3265490.6143667297
[2025-11-25 06:40:12] 2025-11-25 11:39:36,944 | INFO     | intersect: -13906897566.150208
[2025-11-25 06:40:12] 2025-11-25 11:39:36,946 | INFO     | chi2: 4.552448674123819
[2025-11-25 06:40:12] 2025-11-25 11:39:36,946 | INFO     | current chi2=4.552448674123819 (change=34.0493841796149 %)
[2025-11-25 06:40:12] 2025-11-25 11:39:36,947 | INFO     | sum of square deviations: 362048264867.23047
[2025-11-25 06:40:12] 2025-11-25 11:39:36,977 | INFO     | sum of deviations: 2805595365651.294
[2025-11-25 06:40:12] 2025-11-25 11:39:36,977 | INFO     | mean x: 1764038621.162393
[2025-11-25 06:40:12] 2025-11-25 11:39:36,977 | INFO     | mean y: 3268143.5830959165
[2025-11-25 06:40:12] 2025-11-25 11:39:36,977 | INFO     | intersect: -13666673299.660833
[2025-11-25 06:40:12] 2025-11-25 11:39:36,979 | INFO     | chi2: 4.508691336261645
[2025-11-25 06:40:12] 2025-11-25 11:39:36,979 | INFO     | current chi2=4.508691336261645 (change=0.9611824535417911 %)
[2025-11-25 06:40:12] 2025-11-25 11:39:36,979 | INFO     | left removable region: 20
[2025-11-25 06:40:12] 2025-11-25 11:39:36,980 | INFO     | sum of square deviations: 340817105786.6043
[2025-11-25 06:40:12] 2025-11-25 11:39:37,009 | INFO     | sum of deviations: 3239437571725.6743
[2025-11-25 06:40:12] 2025-11-25 11:39:37,009 | INFO     | mean x: 1764038590.6744187
[2025-11-25 06:40:12] 2025-11-25 11:39:37,009 | INFO     | mean y: 3289855.9990310078
[2025-11-25 06:40:12] 2025-11-25 11:39:37,009 | INFO     | intersect: -16763746749.79485
[2025-11-25 06:40:12] 2025-11-25 11:39:37,011 | INFO     | chi2: 0.24938418102274207
[2025-11-25 06:40:12] 2025-11-25 11:39:37,011 | INFO     | current memory leak: 9.50 B/s (using 1032 data points, chi2=0.25)
[2025-11-25 06:40:12] 2025-11-25 11:39:37,012 | INFO     | could have reported an average CPU frequency of 2600 MHz (39 samples)
[2025-11-25 06:40:12] 2025-11-25 11:39:37,012 | INFO     | ..............................
[2025-11-25 06:40:12] 2025-11-25 11:39:37,013 | INFO     | . Timing measurements:
[2025-11-25 06:40:12] 2025-11-25 11:39:37,013 | INFO     | . get job = 0 s
[2025-11-25 06:40:12] 2025-11-25 11:39:37,013 | INFO     | . initial setup = 3 s
[2025-11-25 06:40:12] 2025-11-25 11:39:37,013 | INFO     | . payload setup = 8 s
[2025-11-25 06:40:12] 2025-11-25 11:39:37,013 | INFO     | . stage-in = 0 s
[2025-11-25 06:40:12] 2025-11-25 11:39:37,013 | INFO     | . payload execution = 64845 s
[2025-11-25 06:40:12] 2025-11-25 11:39:37,013 | INFO     | . stage-out = 4 s
[2025-11-25 06:40:12] 2025-11-25 11:39:37,013 | INFO     | . log creation = 1 s
[2025-11-25 06:40:12] 2025-11-25 11:39:37,014 | INFO     | ..............................
[2025-11-25 06:40:12] 2025-11-25 11:39:37,612 | INFO     | 
[2025-11-25 06:40:12] 2025-11-25 11:39:37,612 | INFO     | job summary report
[2025-11-25 06:40:12] 2025-11-25 11:39:37,612 | INFO     | --------------------------------------------------
[2025-11-25 06:40:12] 2025-11-25 11:39:37,612 | INFO     | PanDA job id: 6895368163
[2025-11-25 06:40:12] 2025-11-25 11:39:37,612 | INFO     | task id: 47556137
[2025-11-25 06:40:12] 2025-11-25 11:39:37,613 | INFO     | errors: (none)
[2025-11-25 06:40:12] 2025-11-25 11:39:37,613 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 06:40:12] 2025-11-25 11:39:37,613 | INFO     | pilot state: finished 
[2025-11-25 06:40:12] 2025-11-25 11:39:37,613 | INFO     | transexitcode: 0
[2025-11-25 06:40:12] 2025-11-25 11:39:37,613 | INFO     | exeerrorcode: 0
[2025-11-25 06:40:12] 2025-11-25 11:39:37,613 | INFO     | exeerrordiag: 
[2025-11-25 06:40:12] 2025-11-25 11:39:37,613 | INFO     | exitcode: 0
[2025-11-25 06:40:12] 2025-11-25 11:39:37,613 | INFO     | exitmsg: OK
[2025-11-25 06:40:12] 2025-11-25 11:39:37,613 | INFO     | cpuconsumptiontime: 302144 s
[2025-11-25 06:40:12] 2025-11-25 11:39:37,614 | INFO     | nevents: 1000
[2025-11-25 06:40:12] 2025-11-25 11:39:37,614 | INFO     | neventsw: 0
[2025-11-25 06:40:12] 2025-11-25 11:39:37,614 | INFO     | pid: 893438
[2025-11-25 06:40:12] 2025-11-25 11:39:37,614 | INFO     | pgrp: 893438
[2025-11-25 06:40:12] 2025-11-25 11:39:37,614 | INFO     | corecount: 10
[2025-11-25 06:40:12] 2025-11-25 11:39:37,614 | INFO     | event service: False
[2025-11-25 06:40:12] 2025-11-25 11:39:37,614 | INFO     | sizes: {0: 2284196, 1: 2284338, 8: 2284600, 11: 2284628, 64853: 2341108, 64860: 2350291, 64868: 2350481}
[2025-11-25 06:40:12] 2025-11-25 11:39:37,614 | INFO     | --------------------------------------------------
[2025-11-25 06:40:12] 2025-11-25 11:39:37,615 | INFO     | 
[2025-11-25 06:40:12] 2025-11-25 11:39:37,615 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 06:40:12] 2025-11-25 11:39:37,637 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 06:40:12] 2025-11-25 11:39:37,637 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 06:40:12] 2025-11-25 11:39:37,637 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 06:40:12] 2025-11-25 11:39:37,637 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 06:40:12] 2025-11-25 11:39:37,638 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 06:40:12] 2025-11-25 11:39:37,638 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 06:40:12] 2025-11-25 11:39:37,638 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 06:40:12] 2025-11-25 11:39:37,638 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 06:40:12] 2025-11-25 11:39:37,638 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 06:40:12] 2025-11-25 11:39:37,638 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 06:40:12] 2025-11-25 11:39:37,638 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 06:40:12] 2025-11-25 11:39:37,638 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 06:40:12] 2025-11-25 11:39:37,639 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 06:40:12] 2025-11-25 11:39:37,639 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 06:40:12] 2025-11-25 11:39:37,639 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 06:40:12] 2025-11-25 11:39:37,639 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 06:40:12] 2025-11-25 11:39:37,639 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 06:40:12] 2025-11-25 11:39:37,639 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 06:40:12] 2025-11-25 11:39:37,639 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 06:40:12] 2025-11-25 11:39:37,640 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 06:40:12] 2025-11-25 11:39:37,640 | INFO     | job 6895368163 has completed (purged errors)
[2025-11-25 06:40:12] 2025-11-25 11:39:37,640 | INFO     | overall cleanup function is called
[2025-11-25 06:40:12] 2025-11-25 11:39:38,659 | INFO     | --- collectZombieJob: --- 10, [893438]
[2025-11-25 06:40:12] 2025-11-25 11:39:38,659 | INFO     | zombie collector waiting for pid 893438
[2025-11-25 06:40:12] 2025-11-25 11:39:38,659 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 06:40:12] 2025-11-25 11:39:38,660 | INFO     | collected zombie processes
[2025-11-25 06:40:12] 2025-11-25 11:39:38,660 | INFO     | will attempt to kill all subprocesses of pid=893438
[2025-11-25 06:40:12] 2025-11-25 11:39:39,178 | INFO     | process IDs to be killed: [893438] (in reverse order)
[2025-11-25 06:40:12] 2025-11-25 11:39:39,345 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 06:40:12] 2025-11-25 11:39:39,346 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 06:40:12] 2025-11-25 11:39:39,376 | INFO     | did not find any defunct processes belonging to 893438
[2025-11-25 06:40:12] 2025-11-25 11:39:39,411 | INFO     | did not find any defunct processes belonging to 893438
[2025-11-25 06:40:12] 2025-11-25 11:39:39,416 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 06:40:12] 2025-11-25 11:39:39,416 | INFO     | ready for new job
[2025-11-25 06:40:12] 2025-11-25 11:39:39,416 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 06:40:12] 2025-11-25 11:39:39,421 | INFO     | ***************************************
[2025-11-25 06:40:12] 2025-11-25 11:39:39,422 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 06:40:12] 2025-11-25 11:39:39,422 | INFO     | ***************************************
[2025-11-25 06:40:12] 2025-11-25 11:39:39,422 | INFO     | 
[2025-11-25 06:40:12] 2025-11-25 11:39:39,424 | INFO     | architecture information:
[2025-11-25 06:40:12] 2025-11-25 11:39:39,424 | INFO     | executing command: cat /etc/os-release
[2025-11-25 06:40:12] 2025-11-25 11:39:39,459 | INFO     | cat /etc/os-release:
[2025-11-25 06:40:12] NAME="CentOS Linux"
[2025-11-25 06:40:12] VERSION="7 (Core)"
[2025-11-25 06:40:12] ID="centos"
[2025-11-25 06:40:12] ID_LIKE="rhel fedora"
[2025-11-25 06:40:12] VERSION_ID="7"
[2025-11-25 06:40:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 06:40:12] ANSI_COLOR="0;31"
[2025-11-25 06:40:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 06:40:12] HOME_URL="https://www.centos.org/"
[2025-11-25 06:40:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 06:40:12] 
[2025-11-25 06:40:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 06:40:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 06:40:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 06:40:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 06:40:12] 
[2025-11-25 06:40:12] 2025-11-25 11:39:39,459 | INFO     | ***************************************
[2025-11-25 06:40:12] 2025-11-25 11:39:39,963 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 06:40:12] 2025-11-25 11:39:40,029 | INFO     | sufficient remaining disk space (72665268224 B)
[2025-11-25 06:40:12] 2025-11-25 11:39:40,030 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 06:40:12] 2025-11-25 11:39:40,030 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 06:40:12] 2025-11-25 11:39:40,030 | INFO     | update_server=False
[2025-11-25 06:40:12] 2025-11-25 11:39:40,030 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 06:40:12] 2025-11-25 11:39:40,031 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 06:40:12] 2025-11-25 11:39:40,031 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 06:40:12] 2025-11-25 11:39:40,056 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:40:12] 2025-11-25 11:39:40,056 | INFO     | aborting loop
[2025-11-25 06:40:12] 2025-11-25 11:39:40,094 | INFO     | all data control threads have been joined
[2025-11-25 06:40:12] 2025-11-25 11:39:40,126 | INFO     | all payload control threads have been joined
[2025-11-25 06:40:12] 2025-11-25 11:39:41,035 | INFO     | [job] retrieve thread has finished
[2025-11-25 06:40:12] 2025-11-25 11:39:41,061 | INFO     | [job] job monitor thread has finished
[2025-11-25 06:40:12] 2025-11-25 11:39:41,099 | INFO     | [data] control thread has finished
[2025-11-25 06:40:12] 2025-11-25 11:39:41,127 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 06:40:12] 2025-11-25 11:39:41,132 | INFO     | [payload] control thread has finished
[2025-11-25 06:40:12] 2025-11-25 11:39:41,138 | INFO     | [payload] failed_post thread has finished
[2025-11-25 06:40:12] 2025-11-25 11:39:41,245 | INFO     | all job control threads have been joined
[2025-11-25 06:40:12] 2025-11-25 11:39:41,431 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 06:40:12] 2025-11-25 11:39:41,436 | INFO     | [payload] validate_post thread has finished
[2025-11-25 06:40:12] 2025-11-25 11:39:41,610 | INFO     | [job] validate thread has finished
[2025-11-25 06:40:12] 2025-11-25 11:39:41,790 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 06:40:12] 2025-11-25 11:39:42,038 | INFO     | [data] copytool_out thread has finished
[2025-11-25 06:40:12] 2025-11-25 11:39:42,137 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:40:12] 2025-11-25 11:39:42,212 | INFO     | [data] copytool_in thread has finished
[2025-11-25 06:40:12] 2025-11-25 11:39:42,250 | INFO     | [job] control thread has finished
[2025-11-25 06:40:12] 2025-11-25 11:39:43,152 | INFO     | [job] queue monitor thread has finished
[2025-11-25 06:40:12] 2025-11-25 11:39:44,061 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 06:40:12] 2025-11-25 11:39:50,289 | INFO     | job.realtimelogging is not enabled
[2025-11-25 06:40:12] 2025-11-25 11:39:51,294 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 06:40:12] 2025-11-25 11:40:05,915 | INFO     | [monitor] cgroup control has ended
[2025-11-25 06:40:12] 2025-11-25 11:40:06,690 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139704905946944)>', '<ExcThread(monitor, started 139704414500608)>']
[2025-11-25 06:40:12] 2025-11-25 11:40:09,511 | INFO     | PID=886918 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 06:40:12] 2025-11-25 11:40:09,511 | INFO     | .. there are 43 such processes running
[2025-11-25 06:40:12] 2025-11-25 11:40:09,512 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 06:40:12] 2025-11-25 11:40:09,512 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 06:40:12] 2025-11-25 11:40:09,512 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 06:40:12] 2025-11-25 11:40:09,512 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 06:40:12] 2025-11-25 11:40:09,512 | INFO     | [monitor] control thread has ended
[2025-11-25 06:40:12] 2025-11-25 11:40:11,716 | INFO     | all workflow threads have been joined
[2025-11-25 06:40:12] 2025-11-25 11:40:11,716 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 06:40:12] 2025-11-25 11:40:11,716 | INFO     | traces error code: 0
[2025-11-25 06:40:12] 2025-11-25 11:40:11,717 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 06:40:12] 2025-11-25 11:40:11,933 [wrapper] ==== pilot stdout END ====
[2025-11-25 06:40:12] 2025-11-25 11:40:11,936 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 06:40:12] 2025-11-25 11:40:11,938 [wrapper] pilotpid: 886918
[2025-11-25 06:40:12] 2025-11-25 11:40:11,941 [wrapper] Pilot exit status: 0
[2025-11-25 06:40:12] 2025-11-25 11:40:11,979 [wrapper] pandaids: 6895368163
[2025-11-25 06:40:12] 2025-11-25 11:40:12,105 [wrapper] cleanup supervisor_pilot  750898 886919
[2025-11-25 06:40:12] 2025-11-25 11:40:12,110 [wrapper] Test setup, not cleaning
[2025-11-25 06:40:12] 2025-11-25 11:40:12,113 [wrapper] apfmon messages muted
[2025-11-25 06:40:12] 2025-11-25 11:40:12,116 [wrapper] ==== wrapper stdout END ====
[2025-11-25 06:40:12] 2025-11-25 11:40:12,118 [wrapper] ==== wrapper stderr END ====
[2025-11-25 06:40:12]  *** Error codes and diagnostics ***
[2025-11-25 06:40:12]     "exeErrorCode": 0,
[2025-11-25 06:40:12]     "exeErrorDiag": "",
[2025-11-25 06:40:12]     "pilotErrorCode": 0,
[2025-11-25 06:40:12]     "pilotErrorDiag": "",
[2025-11-25 06:40:12]  *** Listing of results directory ***
[2025-11-25 06:40:12] total 1311144
[2025-11-25 06:40:12] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 14:32 queuedata.json
[2025-11-25 06:40:12] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 14:32 pilot3.tar.gz
[2025-11-25 06:40:12] -rwx------. 1 boincer umatlas     36292 Nov 23 14:32 runpilot2-wrapper.sh
[2025-11-25 06:40:12] -rw-r--r--. 1 boincer umatlas       100 Nov 24 12:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 06:40:12] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 12:37 run_atlas
[2025-11-25 06:40:12] -rw-r--r--. 1 boincer umatlas       105 Nov 24 12:37 job.xml
[2025-11-25 06:40:12] -rw-r--r--. 2 boincer umatlas 412104975 Nov 24 12:37 EVNT.47483658._000868.pool.root.1
[2025-11-25 06:40:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 12:37 start_atlas.sh
[2025-11-25 06:40:12] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 12:37 shared
[2025-11-25 06:40:12] -rw-r--r--. 2 boincer umatlas    590107 Nov 24 12:37 input.tar.gz
[2025-11-25 06:40:12] -rw-r--r--. 1 boincer umatlas         0 Nov 24 12:37 boinc_lockfile
[2025-11-25 06:40:12] -rw-r--r--. 1 boincer umatlas      2786 Nov 24 12:37 pandaJob.out
[2025-11-25 06:40:12] -rw-------. 1 boincer umatlas        57 Nov 24 12:37 setup.sh.local
[2025-11-25 06:40:12] -rw-------. 1 boincer umatlas    991801 Nov 24 12:38 agis_schedconf.cvmfs.json
[2025-11-25 06:40:12] drwx------. 5 boincer umatlas      4096 Nov 24 12:38 pilot3
[2025-11-25 06:40:12] -rw-r--r--. 1 boincer umatlas       533 Nov 25 06:27 boinc_task_state.xml
[2025-11-25 06:40:12] -rw-r--r--. 1 boincer umatlas      6656 Nov 25 06:36 init_data.xml
[2025-11-25 06:40:12] -rw-------. 1 boincer umatlas 904345439 Nov 25 06:38 HITS.47556137._008546.pool.root.1
[2025-11-25 06:40:12] -rw-------. 1 boincer umatlas        95 Nov 25 06:39 pilot_heartbeat.json
[2025-11-25 06:40:12] -rw-------. 1 boincer umatlas      1067 Nov 25 06:39 memory_monitor_summary.json
[2025-11-25 06:40:12] -rw-------. 1 boincer umatlas   1516240 Nov 25 06:39 agis_ddmendpoints.agis.ALL.json
[2025-11-25 06:40:12] -rw-------. 1 boincer umatlas   2442303 Nov 25 06:39 log.47556137._008546.job.log.tgz.1
[2025-11-25 06:40:12] -rw-------. 1 boincer umatlas      8641 Nov 25 06:39 heartbeat.json
[2025-11-25 06:40:12] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 06:40 boinc_mmap_file
[2025-11-25 06:40:12] -rw-r--r--. 1 boincer umatlas        29 Nov 25 06:40 wrapper_checkpoint.txt
[2025-11-25 06:40:12] -rw-------. 1 boincer umatlas      4895 Nov 25 06:40 pilotlog.txt
[2025-11-25 06:40:12] -rw-------. 1 boincer umatlas   8675626 Nov 25 06:40 log.47556137._008546.job.log.1
[2025-11-25 06:40:12] -rw-------. 1 boincer umatlas       353 Nov 25 06:40 output.list
[2025-11-25 06:40:12] -rw-r--r--. 1 boincer umatlas       620 Nov 25 06:40 runtime_log
[2025-11-25 06:40:12] -rw-------. 1 boincer umatlas  11141120 Nov 25 06:40 result.tar.gz
[2025-11-25 06:40:12] -rw-r--r--. 1 boincer umatlas      9330 Nov 25 06:40 runtime_log.err
[2025-11-25 06:40:12] -rw-------. 1 boincer umatlas       660 Nov 25 06:40 09hKDmW0Uh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKiIKDmhXsGCn.diag
[2025-11-25 06:40:12] -rw-r--r--. 1 boincer umatlas     21350 Nov 25 06:40 stderr.txt
[2025-11-25 06:40:12] HITS file was successfully produced:
[2025-11-25 06:40:12] -rw-------. 1 boincer umatlas 904345439 Nov 25 06:38 shared/HITS.pool.root.1
[2025-11-25 06:40:12]  *** Contents of shared directory: ***
[2025-11-25 06:40:12] total 1297080
[2025-11-25 06:40:12] -rw-r--r--. 2 boincer umatlas 412104975 Nov 24 12:37 ATLAS.root_0
[2025-11-25 06:40:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 12:37 start_atlas.sh
[2025-11-25 06:40:12] -rw-r--r--. 2 boincer umatlas    590107 Nov 24 12:37 input.tar.gz
[2025-11-25 06:40:12] -rw-------. 1 boincer umatlas 904345439 Nov 25 06:38 HITS.pool.root.1
[2025-11-25 06:40:12] -rw-------. 1 boincer umatlas  11141120 Nov 25 06:40 result.tar.gz
06:40:13 (882728): run_atlas exited; CPU time 304019.907284
06:40:13 (882728): called boinc_finish(0)

</stderr_txt>
]]>

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