Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:29:13 (3891918): wrapper (7.7.26015): starting
05:29:13 (3891918): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 05:29:13] Arguments: --nthreads 8
[2025-11-24 05:29:13] Threads: 8
[2025-11-24 05:29:13] Checking for CVMFS
[2025-11-24 05:29:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 05:29:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 05:29:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 05:29:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 05:29:16] 2.13.3.0 42195 26910 348472 153242 0 140 32152157 32935936 26415 16776704 0 160149004 99.784 93674113 33482 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 05:29:16] CVMFS is ok
[2025-11-24 05:29:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 05:29:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 05:29:16] Further information can be found at the LHC@home message board.
[2025-11-24 05:29:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 05:29:16] Checking for apptainer binary...
[2025-11-24 05:29:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 05:29:16] Running /usr/bin/apptainer --version
[2025-11-24 05:29:16] apptainer version 1.4.4-1.el9
[2025-11-24 05:29:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 05:29:16] c-6-3.aglt2.org
[2025-11-24 05:29:16] apptainer works
[2025-11-24 05:29:16] Set ATHENA_PROC_NUMBER=8
[2025-11-24 05:29:16] Set ATHENA_CORE_NUMBER=8
[2025-11-24 05:29:16] Starting ATLAS job with PandaID=6895351124
[2025-11-24 05:29:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 03:18:19]  *** The last 200 lines of the pilot log: ***
[2025-11-25 03:18:19] 2025-11-25 08:17:12,032 | INFO     | monitor loop #5246: job 0:6895351124 is in state 'finished'
[2025-11-25 03:18:19] 2025-11-25 08:17:12,032 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:18:19] 2025-11-25 08:17:12,498 | INFO     | time since job start (78438s) is within the limit (172800.0s)
[2025-11-25 03:18:19] 2025-11-25 08:17:14,510 | INFO     | time since job start (78440s) is within the limit (172800.0s)
[2025-11-25 03:18:19] 2025-11-25 08:17:14,557 | INFO     | monitor loop #5247: job 0:6895351124 is in state 'finished'
[2025-11-25 03:18:19] 2025-11-25 08:17:14,558 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:18:19] 2025-11-25 08:17:16,515 | INFO     | time since job start (78442s) is within the limit (172800.0s)
[2025-11-25 03:18:19] 2025-11-25 08:17:17,063 | INFO     | monitor loop #5248: job 0:6895351124 is in state 'finished'
[2025-11-25 03:18:19] 2025-11-25 08:17:17,064 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:18:19] 2025-11-25 08:17:18,530 | INFO     | time since job start (78444s) is within the limit (172800.0s)
[2025-11-25 03:18:19] 2025-11-25 08:17:19,570 | INFO     | monitor loop #5249: job 0:6895351124 is in state 'finished'
[2025-11-25 03:18:19] 2025-11-25 08:17:19,570 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:18:19] 2025-11-25 08:17:20,537 | INFO     | time since job start (78446s) is within the limit (172800.0s)
[2025-11-25 03:18:19] 2025-11-25 08:17:22,078 | INFO     | monitor loop #5250: job 0:6895351124 is in state 'finished'
[2025-11-25 03:18:19] 2025-11-25 08:17:22,084 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 03:18:19] 2025-11-25 08:17:22,544 | INFO     | time since job start (78448s) is within the limit (172800.0s)
[2025-11-25 03:18:19] 2025-11-25 08:17:24,323 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 03:18:19] 2025-11-25 08:17:24,338 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.208875
[2025-11-25 03:18:19] 2025-11-25 08:17:24,351 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895351124/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 03:18:19] 2025-11-25 08:17:24,351 | INFO     | extracted standard info from prmon json
[2025-11-25 03:18:19] 2025-11-25 08:17:24,352 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 03:18:19] 2025-11-25 08:17:24,352 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 03:18:19] 2025-11-25 08:17:24,376 | INFO     | fitting pss+swap vs Time
[2025-11-25 03:18:19] 2025-11-25 08:17:24,378 | INFO     | sum of square deviations: 656421807954.0428
[2025-11-25 03:18:19] 2025-11-25 08:17:24,423 | INFO     | sum of deviations: 3156972852744.7163
[2025-11-25 03:18:19] 2025-11-25 08:17:24,423 | INFO     | mean x: 1764019396.360592
[2025-11-25 03:18:19] 2025-11-25 08:17:24,423 | INFO     | mean y: 2934287.464953271
[2025-11-25 03:18:19] 2025-11-25 08:17:24,423 | INFO     | intersect: -8480880964.473481
[2025-11-25 03:18:19] 2025-11-25 08:17:24,425 | INFO     | chi2: 12.39035630133159
[2025-11-25 03:18:19] 2025-11-25 08:17:24,427 | INFO     | sum of square deviations: 648783657570.3278
[2025-11-25 03:18:19] 2025-11-25 08:17:24,467 | INFO     | sum of deviations: 3584107048510.6826
[2025-11-25 03:18:19] 2025-11-25 08:17:24,467 | INFO     | mean x: 1764019243.8639562
[2025-11-25 03:18:19] 2025-11-25 08:17:24,468 | INFO     | mean y: 2942813.659108679
[2025-11-25 03:18:19] 2025-11-25 08:17:24,468 | INFO     | intersect: -9742114312.654129
[2025-11-25 03:18:19] 2025-11-25 08:17:24,469 | INFO     | chi2: 9.315691985747815
[2025-11-25 03:18:19] 2025-11-25 08:17:24,470 | INFO     | current chi2=9.315691985747815 (change=24.81497901116323 %)
[2025-11-25 03:18:19] 2025-11-25 08:17:24,470 | INFO     | right removable region: 1278
[2025-11-25 03:18:19] 2025-11-25 08:17:24,471 | INFO     | sum of square deviations: 648782983520.3281
[2025-11-25 03:18:19] 2025-11-25 08:17:24,512 | INFO     | sum of deviations: 2701355110541.474
[2025-11-25 03:18:19] 2025-11-25 08:17:24,513 | INFO     | mean x: 1764019548.8639562
[2025-11-25 03:18:19] 2025-11-25 08:17:24,513 | INFO     | mean y: 2943380.7326035965
[2025-11-25 03:18:19] 2025-11-25 08:17:24,513 | INFO     | intersect: -7341952130.494081
[2025-11-25 03:18:19] 2025-11-25 08:17:24,515 | INFO     | chi2: 9.32444719834772
[2025-11-25 03:18:19] 2025-11-25 08:17:24,515 | INFO     | current chi2=9.32444719834772 (change=24.744317503237394 %)
[2025-11-25 03:18:19] 2025-11-25 08:17:24,515 | INFO     | left removable region: 10
[2025-11-25 03:18:19] 2025-11-25 08:17:24,517 | INFO     | sum of square deviations: 632187531827.789
[2025-11-25 03:18:19] 2025-11-25 08:17:24,578 | INFO     | sum of deviations: 3040054775682.7563
[2025-11-25 03:18:19] 2025-11-25 08:17:24,578 | INFO     | mean x: 1764019518.3706625
[2025-11-25 03:18:19] 2025-11-25 08:17:24,579 | INFO     | mean y: 2957419.5473186118
[2025-11-25 03:18:19] 2025-11-25 08:17:24,579 | INFO     | intersect: -8479835567.077352
[2025-11-25 03:18:19] 2025-11-25 08:17:24,581 | INFO     | chi2: 5.067223495740422
[2025-11-25 03:18:19] 2025-11-25 08:17:24,581 | INFO     | current memory leak: 4.81 B/s (using 1268 data points, chi2=5.07)
[2025-11-25 03:18:19] 2025-11-25 08:17:24,582 | INFO     | could have reported an average CPU frequency of 2600 MHz (47 samples)
[2025-11-25 03:18:19] 2025-11-25 08:17:24,582 | INFO     | ..............................
[2025-11-25 03:18:19] 2025-11-25 08:17:24,582 | INFO     | . Timing measurements:
[2025-11-25 03:18:19] 2025-11-25 08:17:24,582 | INFO     | . get job = 0 s
[2025-11-25 03:18:19] 2025-11-25 08:17:24,583 | INFO     | . initial setup = 3 s
[2025-11-25 03:18:19] 2025-11-25 08:17:24,583 | INFO     | . payload setup = 20 s
[2025-11-25 03:18:19] 2025-11-25 08:17:24,583 | INFO     | . stage-in = 0 s
[2025-11-25 03:18:19] 2025-11-25 08:17:24,583 | INFO     | . payload execution = 78316 s
[2025-11-25 03:18:19] 2025-11-25 08:17:24,583 | INFO     | . stage-out = 37 s
[2025-11-25 03:18:19] 2025-11-25 08:17:24,583 | INFO     | . log creation = 4 s
[2025-11-25 03:18:19] 2025-11-25 08:17:24,583 | INFO     | ..............................
[2025-11-25 03:18:19] 2025-11-25 08:17:24,593 | INFO     | time since job start (78450s) is within the limit (172800.0s)
[2025-11-25 03:18:19] 2025-11-25 08:17:24,755 | INFO     | 
[2025-11-25 03:18:19] 2025-11-25 08:17:24,767 | INFO     | job summary report
[2025-11-25 03:18:19] 2025-11-25 08:17:24,767 | INFO     | --------------------------------------------------
[2025-11-25 03:18:19] 2025-11-25 08:17:24,767 | INFO     | PanDA job id: 6895351124
[2025-11-25 03:18:19] 2025-11-25 08:17:24,767 | INFO     | task id: 47556137
[2025-11-25 03:18:19] 2025-11-25 08:17:24,767 | INFO     | errors: (none)
[2025-11-25 03:18:19] 2025-11-25 08:17:24,768 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 03:18:19] 2025-11-25 08:17:24,768 | INFO     | pilot state: finished 
[2025-11-25 03:18:19] 2025-11-25 08:17:24,768 | INFO     | transexitcode: 0
[2025-11-25 03:18:19] 2025-11-25 08:17:24,768 | INFO     | exeerrorcode: 0
[2025-11-25 03:18:19] 2025-11-25 08:17:24,768 | INFO     | exeerrordiag: 
[2025-11-25 03:18:19] 2025-11-25 08:17:24,768 | INFO     | exitcode: 0
[2025-11-25 03:18:19] 2025-11-25 08:17:24,768 | INFO     | exitmsg: OK
[2025-11-25 03:18:19] 2025-11-25 08:17:24,768 | INFO     | cpuconsumptiontime: 298015 s
[2025-11-25 03:18:19] 2025-11-25 08:17:24,768 | INFO     | nevents: 1000
[2025-11-25 03:18:19] 2025-11-25 08:17:24,769 | INFO     | neventsw: 0
[2025-11-25 03:18:19] 2025-11-25 08:17:24,769 | INFO     | pid: 3904897
[2025-11-25 03:18:19] 2025-11-25 08:17:24,769 | INFO     | pgrp: 3904897
[2025-11-25 03:18:19] 2025-11-25 08:17:24,769 | INFO     | corecount: 8
[2025-11-25 03:18:19] 2025-11-25 08:17:24,769 | INFO     | event service: False
[2025-11-25 03:18:19] 2025-11-25 08:17:24,769 | INFO     | sizes: {0: 2298705, 1: 2298705, 2: 2298733, 13: 2298761, 17: 2299079, 24: 2299107, 78341: 2362406, 78380: 2372437, 78383: 2372493, 78414: 2372517}
[2025-11-25 03:18:19] 2025-11-25 08:17:24,769 | INFO     | --------------------------------------------------
[2025-11-25 03:18:19] 2025-11-25 08:17:24,769 | INFO     | 
[2025-11-25 03:18:19] 2025-11-25 08:17:24,769 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 03:18:19] 2025-11-25 08:17:24,833 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 03:18:19] 2025-11-25 08:17:24,833 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 03:18:19] 2025-11-25 08:17:24,833 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 03:18:19] 2025-11-25 08:17:24,834 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 03:18:19] 2025-11-25 08:17:24,834 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 03:18:19] 2025-11-25 08:17:24,834 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 03:18:19] 2025-11-25 08:17:24,834 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 03:18:19] 2025-11-25 08:17:24,834 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 03:18:19] 2025-11-25 08:17:24,834 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 03:18:19] 2025-11-25 08:17:24,834 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 03:18:19] 2025-11-25 08:17:24,834 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 03:18:19] 2025-11-25 08:17:24,834 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 03:18:19] 2025-11-25 08:17:24,834 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 03:18:19] 2025-11-25 08:17:24,835 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 03:18:19] 2025-11-25 08:17:24,835 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 03:18:19] 2025-11-25 08:17:24,835 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 03:18:19] 2025-11-25 08:17:24,835 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 03:18:19] 2025-11-25 08:17:24,835 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 03:18:19] 2025-11-25 08:17:24,835 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 03:18:19] 2025-11-25 08:17:24,835 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 03:18:19] 2025-11-25 08:17:24,836 | INFO     | job 6895351124 has completed (purged errors)
[2025-11-25 03:18:19] 2025-11-25 08:17:24,836 | INFO     | overall cleanup function is called
[2025-11-25 03:18:19] 2025-11-25 08:17:25,858 | INFO     | --- collectZombieJob: --- 10, [3904897]
[2025-11-25 03:18:19] 2025-11-25 08:17:25,858 | INFO     | zombie collector waiting for pid 3904897
[2025-11-25 03:18:19] 2025-11-25 08:17:25,858 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 03:18:19] 2025-11-25 08:17:25,858 | INFO     | collected zombie processes
[2025-11-25 03:18:19] 2025-11-25 08:17:25,858 | INFO     | will attempt to kill all subprocesses of pid=3904897
[2025-11-25 03:18:19] 2025-11-25 08:17:26,621 | INFO     | process IDs to be killed: [3904897] (in reverse order)
[2025-11-25 03:18:19] 2025-11-25 08:17:26,768 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 03:18:19] 2025-11-25 08:17:26,768 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 03:18:19] 2025-11-25 08:17:26,823 | INFO     | did not find any defunct processes belonging to 3904897
[2025-11-25 03:18:19] 2025-11-25 08:17:26,854 | INFO     | did not find any defunct processes belonging to 3904897
[2025-11-25 03:18:19] 2025-11-25 08:17:26,859 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 03:18:19] 2025-11-25 08:17:26,860 | INFO     | ready for new job
[2025-11-25 03:18:19] 2025-11-25 08:17:26,860 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 03:18:19] 2025-11-25 08:17:26,865 | INFO     | ***************************************
[2025-11-25 03:18:19] 2025-11-25 08:17:26,865 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 03:18:19] 2025-11-25 08:17:26,865 | INFO     | ***************************************
[2025-11-25 03:18:19] 2025-11-25 08:17:26,865 | INFO     | 
[2025-11-25 03:18:19] 2025-11-25 08:17:26,867 | INFO     | architecture information:
[2025-11-25 03:18:19] 2025-11-25 08:17:26,868 | INFO     | executing command: cat /etc/os-release
[2025-11-25 03:18:19] 2025-11-25 08:17:26,980 | INFO     | cat /etc/os-release:
[2025-11-25 03:18:19] NAME="CentOS Linux"
[2025-11-25 03:18:19] VERSION="7 (Core)"
[2025-11-25 03:18:19] ID="centos"
[2025-11-25 03:18:19] ID_LIKE="rhel fedora"
[2025-11-25 03:18:19] VERSION_ID="7"
[2025-11-25 03:18:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 03:18:19] ANSI_COLOR="0;31"
[2025-11-25 03:18:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 03:18:19] HOME_URL="https://www.centos.org/"
[2025-11-25 03:18:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 03:18:19] 
[2025-11-25 03:18:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 03:18:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 03:18:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 03:18:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 03:18:19] 
[2025-11-25 03:18:19] 2025-11-25 08:17:26,980 | INFO     | ***************************************
[2025-11-25 03:18:19] 2025-11-25 08:17:27,488 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 03:18:19] 2025-11-25 08:17:27,561 | INFO     | sufficient remaining disk space (70175948800 B)
[2025-11-25 03:18:19] 2025-11-25 08:17:27,562 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 03:18:19] 2025-11-25 08:17:27,562 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 03:18:19] 2025-11-25 08:17:27,562 | INFO     | update_server=False
[2025-11-25 03:18:19] 2025-11-25 08:17:27,562 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 03:18:19] 2025-11-25 08:17:27,562 | INFO     | all payload control threads have been joined
[2025-11-25 03:18:19] 2025-11-25 08:17:28,133 | INFO     | all job control threads have been joined
[2025-11-25 03:18:19] 2025-11-25 08:17:28,168 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 03:18:19] 2025-11-25 08:17:28,168 | INFO     | aborting loop
[2025-11-25 03:18:19] 2025-11-25 08:17:28,388 | INFO     | all data control threads have been joined
[2025-11-25 03:18:19] 2025-11-25 08:17:28,568 | INFO     | [job] retrieve thread has finished
[2025-11-25 03:18:19] 2025-11-25 08:17:28,575 | INFO     | [payload] control thread has finished
[2025-11-25 03:18:19] 2025-11-25 08:17:28,798 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 03:18:19] 2025-11-25 08:17:28,803 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 03:18:19] 2025-11-25 08:17:28,809 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 03:18:19] 2025-11-25 08:17:29,123 | INFO     | [job] validate thread has finished
[2025-11-25 03:18:19] 2025-11-25 08:17:29,139 | INFO     | [job] control thread has finished
[2025-11-25 03:18:19] 2025-11-25 08:17:29,173 | INFO     | [job] job monitor thread has finished
[2025-11-25 03:18:19] 2025-11-25 08:17:29,218 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 03:18:19] 2025-11-25 08:17:29,272 | INFO     | [payload] validate_post thread has finished
[2025-11-25 03:18:19] 2025-11-25 08:17:29,343 | INFO     | [payload] failed_post thread has finished
[2025-11-25 03:18:19] 2025-11-25 08:17:29,354 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 03:18:19] 2025-11-25 08:17:29,421 | INFO     | [data] copytool_in thread has finished
[2025-11-25 03:18:19] 2025-11-25 08:17:29,436 | INFO     | [data] control thread has finished
[2025-11-25 03:18:19] 2025-11-25 08:17:29,771 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 03:18:19] 2025-11-25 08:17:30,777 | INFO     | [job] queue monitor thread has finished
[2025-11-25 03:18:19] 2025-11-25 08:17:30,820 | INFO     | [data] copytool_out thread has finished
[2025-11-25 03:18:19] 2025-11-25 08:17:30,824 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 03:18:19] 2025-11-25 08:17:34,832 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 03:18:19] 2025-11-25 08:17:59,052 | INFO     | PID=3896284 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 03:18:19] 2025-11-25 08:17:59,052 | INFO     | .. there are 43 such processes running
[2025-11-25 03:18:19] 2025-11-25 08:17:59,053 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 03:18:19] 2025-11-25 08:17:59,054 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 03:18:19] 2025-11-25 08:17:59,054 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 03:18:19] 2025-11-25 08:18:10,609 | INFO     | [monitor] cgroup control has ended
[2025-11-25 03:18:19] 2025-11-25 08:18:12,200 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140512044853056)>', '<ExcThread(monitor, started 140511306303232)>']
[2025-11-25 03:18:19] 2025-11-25 08:18:12,236 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 03:18:19] 2025-11-25 08:18:12,236 | INFO     | [monitor] control thread has ended
[2025-11-25 03:18:19] 2025-11-25 08:18:17,227 | INFO     | all workflow threads have been joined
[2025-11-25 03:18:19] 2025-11-25 08:18:17,228 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 03:18:19] 2025-11-25 08:18:17,228 | INFO     | traces error code: 0
[2025-11-25 03:18:19] 2025-11-25 08:18:17,228 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 03:18:19] 2025-11-25 08:18:17,773 [wrapper] ==== pilot stdout END ====
[2025-11-25 03:18:19] 2025-11-25 08:18:17,808 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 03:18:19] 2025-11-25 08:18:17,822 [wrapper] pilotpid: 3896284
[2025-11-25 03:18:19] 2025-11-25 08:18:17,942 [wrapper] Pilot exit status: 0
[2025-11-25 03:18:19] 2025-11-25 08:18:18,176 [wrapper] pandaids: 6895351124
[2025-11-25 03:18:19] 2025-11-25 08:18:18,441 [wrapper] cleanup supervisor_pilot  134465 3896285
[2025-11-25 03:18:19] 2025-11-25 08:18:18,461 [wrapper] Test setup, not cleaning
[2025-11-25 03:18:19] 2025-11-25 08:18:18,481 [wrapper] apfmon messages muted
[2025-11-25 03:18:19] 2025-11-25 08:18:18,497 [wrapper] ==== wrapper stdout END ====
[2025-11-25 03:18:19] 2025-11-25 08:18:18,541 [wrapper] ==== wrapper stderr END ====
[2025-11-25 03:18:19]  *** Error codes and diagnostics ***
[2025-11-25 03:18:19]     "exeErrorCode": 0,
[2025-11-25 03:18:19]     "exeErrorDiag": "",
[2025-11-25 03:18:19]     "pilotErrorCode": 0,
[2025-11-25 03:18:19]     "pilotErrorDiag": "",
[2025-11-25 03:18:19]  *** Listing of results directory ***
[2025-11-25 03:18:19] total 1314140
[2025-11-25 03:18:19] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 17:51 pilot3.tar.gz
[2025-11-25 03:18:19] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 18:03 queuedata.json
[2025-11-25 03:18:19] -rwx------. 1 boincer umatlas     36292 Nov 22 18:04 runpilot2-wrapper.sh
[2025-11-25 03:18:19] -rw-r--r--. 1 boincer umatlas       100 Nov 24 05:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 03:18:19] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 05:29 run_atlas
[2025-11-25 03:18:19] -rw-r--r--. 1 boincer umatlas       105 Nov 24 05:29 job.xml
[2025-11-25 03:18:19] -rw-r--r--. 2 boincer umatlas 410526985 Nov 24 05:29 EVNT.47483658._000538.pool.root.1
[2025-11-25 03:18:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 05:29 start_atlas.sh
[2025-11-25 03:18:19] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 05:29 shared
[2025-11-25 03:18:19] -rw-r--r--. 2 boincer umatlas    590101 Nov 24 05:29 input.tar.gz
[2025-11-25 03:18:19] -rw-r--r--. 1 boincer umatlas         0 Nov 24 05:29 boinc_lockfile
[2025-11-25 03:18:19] -rw-r--r--. 1 boincer umatlas      2784 Nov 24 05:29 pandaJob.out
[2025-11-25 03:18:19] -rw-------. 1 boincer umatlas        57 Nov 24 05:29 setup.sh.local
[2025-11-25 03:18:19] -rw-------. 1 boincer umatlas    989824 Nov 24 05:29 agis_schedconf.cvmfs.json
[2025-11-25 03:18:19] drwx------. 5 boincer umatlas      4096 Nov 24 05:29 pilot3
[2025-11-25 03:18:19] -rw-r--r--. 1 boincer umatlas       533 Nov 25 02:51 boinc_task_state.xml
[2025-11-25 03:18:19] -rw-r--r--. 1 boincer umatlas      6656 Nov 25 03:10 init_data.xml
[2025-11-25 03:18:19] -rw-------. 1 boincer umatlas 905310900 Nov 25 03:14 HITS.47556137._005335.pool.root.1
[2025-11-25 03:18:19] -rw-------. 1 boincer umatlas      1070 Nov 25 03:16 memory_monitor_summary.json
[2025-11-25 03:18:19] -rw-------. 1 boincer umatlas   1516227 Nov 25 03:16 agis_ddmendpoints.agis.ALL.json
[2025-11-25 03:18:19] -rw-------. 1 boincer umatlas   2402991 Nov 25 03:16 log.47556137._005335.job.log.tgz.1
[2025-11-25 03:18:19] -rw-------. 1 boincer umatlas      8638 Nov 25 03:17 heartbeat.json
[2025-11-25 03:18:19] -rw-------. 1 boincer umatlas        95 Nov 25 03:17 pilot_heartbeat.json
[2025-11-25 03:18:19] -rw-r--r--. 1 boincer umatlas        29 Nov 25 03:18 wrapper_checkpoint.txt
[2025-11-25 03:18:19] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 03:18 boinc_mmap_file
[2025-11-25 03:18:19] -rw-------. 1 boincer umatlas      4824 Nov 25 03:18 pilotlog.txt
[2025-11-25 03:18:19] -rw-------. 1 boincer umatlas  10558608 Nov 25 03:18 log.47556137._005335.job.log.1
[2025-11-25 03:18:19] -rw-------. 1 boincer umatlas       353 Nov 25 03:18 output.list
[2025-11-25 03:18:19] -rw-r--r--. 1 boincer umatlas       620 Nov 25 03:18 runtime_log
[2025-11-25 03:18:19] -rw-------. 1 boincer umatlas  12984320 Nov 25 03:18 result.tar.gz
[2025-11-25 03:18:19] -rw-r--r--. 1 boincer umatlas      9328 Nov 25 03:18 runtime_log.err
[2025-11-25 03:18:19] -rw-------. 1 boincer umatlas       661 Nov 25 03:18 es0LDmVpBh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxRKKDmfO4pTn.diag
[2025-11-25 03:18:19] -rw-r--r--. 1 boincer umatlas     21784 Nov 25 03:18 stderr.txt
[2025-11-25 03:18:19] HITS file was successfully produced:
[2025-11-25 03:18:19] -rw-------. 1 boincer umatlas 905310900 Nov 25 03:14 shared/HITS.pool.root.1
[2025-11-25 03:18:19]  *** Contents of shared directory: ***
[2025-11-25 03:18:19] total 1298284
[2025-11-25 03:18:19] -rw-r--r--. 2 boincer umatlas 410526985 Nov 24 05:29 ATLAS.root_0
[2025-11-25 03:18:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 05:29 start_atlas.sh
[2025-11-25 03:18:19] -rw-r--r--. 2 boincer umatlas    590101 Nov 24 05:29 input.tar.gz
[2025-11-25 03:18:19] -rw-------. 1 boincer umatlas 905310900 Nov 25 03:14 HITS.pool.root.1
[2025-11-25 03:18:19] -rw-------. 1 boincer umatlas  12984320 Nov 25 03:18 result.tar.gz
03:18:41 (3891918): run_atlas exited; CPU time 300578.599251
03:18:41 (3891918): called boinc_finish(0)

</stderr_txt>
]]>

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