Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:56 (579568): wrapper (7.7.26015): starting
00:03:56 (579568): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:03:56] Arguments: --nthreads 9
[2025-11-24 00:03:56] Threads: 9
[2025-11-24 00:03:56] Checking for CVMFS
[2025-11-24 00:03:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:03:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:03:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:03:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:03:57] 2.13.3.0 13122 26727 362004 153233 2 407 31198319 32935937 34118 16776704 0 129077937 99.566 142974431 36219 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:03:57] CVMFS is ok
[2025-11-24 00:03:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:03:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:03:57] Further information can be found at the LHC@home message board.
[2025-11-24 00:03:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:03:57] Checking for apptainer binary...
[2025-11-24 00:03:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:03:57] Running /usr/bin/apptainer --version
[2025-11-24 00:03:57] apptainer version 1.4.4-1.el9
[2025-11-24 00:03:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:03:58] c6-8-25-2.aglt2.org
[2025-11-24 00:03:58] apptainer works
[2025-11-24 00:03:58] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:03:58] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:03:58] Starting ATLAS job with PandaID=6895339987
[2025-11-24 00:03:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 07:40:26]  *** The last 200 lines of the pilot log: ***
[2025-11-25 07:40:26] 2025-11-25 12:39:30,104 | INFO     | time since job start (113699s) is within the limit (172800.0s)
[2025-11-25 07:40:26] 2025-11-25 12:39:32,123 | INFO     | time since job start (113701s) is within the limit (172800.0s)
[2025-11-25 07:40:26] 2025-11-25 12:39:32,540 | INFO     | monitor loop #5707: job 0:6895339987 is in state 'finished'
[2025-11-25 07:40:26] 2025-11-25 12:39:32,542 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 07:40:26] 2025-11-25 12:39:34,161 | INFO     | time since job start (113703s) is within the limit (172800.0s)
[2025-11-25 07:40:26] 2025-11-25 12:39:35,050 | INFO     | monitor loop #5708: job 0:6895339987 is in state 'finished'
[2025-11-25 07:40:26] 2025-11-25 12:39:35,050 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 07:40:26] 2025-11-25 12:39:36,191 | INFO     | time since job start (113705s) is within the limit (172800.0s)
[2025-11-25 07:40:26] 2025-11-25 12:39:37,555 | INFO     | monitor loop #5709: job 0:6895339987 is in state 'finished'
[2025-11-25 07:40:26] 2025-11-25 12:39:37,556 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 07:40:26] 2025-11-25 12:39:38,220 | INFO     | time since job start (113707s) is within the limit (172800.0s)
[2025-11-25 07:40:26] 2025-11-25 12:39:39,350 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 07:40:26] 2025-11-25 12:39:39,428 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2681.287052083334
[2025-11-25 07:40:26] 2025-11-25 12:39:39,847 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895339987/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 07:40:26] 2025-11-25 12:39:39,849 | INFO     | extracted standard info from prmon json
[2025-11-25 07:40:26] 2025-11-25 12:39:39,849 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 07:40:26] 2025-11-25 12:39:39,849 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 07:40:26] 2025-11-25 12:39:40,089 | INFO     | monitor loop #5710: job 0:6895339987 is in state 'finished'
[2025-11-25 07:40:26] 2025-11-25 12:39:40,089 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 07:40:26] 2025-11-25 12:39:40,406 | INFO     | fitting pss+swap vs Time
[2025-11-25 07:40:26] 2025-11-25 12:39:40,459 | INFO     | sum of square deviations: 2001676166625.3687
[2025-11-25 07:40:26] 2025-11-25 12:39:41,556 | INFO     | sum of deviations: 5816320609813.585
[2025-11-25 07:40:26] 2025-11-25 12:39:41,557 | INFO     | mean x: 1764017506.7663803
[2025-11-25 07:40:26] 2025-11-25 12:39:41,557 | INFO     | mean y: 3124658.84962406
[2025-11-25 07:40:26] 2025-11-25 12:39:41,557 | INFO     | intersect: -5122625226.045488
[2025-11-25 07:40:26] 2025-11-25 12:39:41,596 | INFO     | chi2: 21.601359334899904
[2025-11-25 07:40:26] 2025-11-25 12:39:41,632 | INFO     | sum of square deviations: 1985594631222.1233
[2025-11-25 07:40:26] 2025-11-25 12:39:42,117 | INFO     | sum of deviations: 6518875893046.374
[2025-11-25 07:40:26] 2025-11-25 12:39:42,130 | INFO     | mean x: 1764017354.2724824
[2025-11-25 07:40:26] 2025-11-25 12:39:42,130 | INFO     | mean y: 3131320.2067851373
[2025-11-25 07:40:26] 2025-11-25 12:39:42,130 | INFO     | intersect: -5788287544.883771
[2025-11-25 07:40:26] 2025-11-25 12:39:42,133 | INFO     | chi2: 18.088400166554887
[2025-11-25 07:40:26] 2025-11-25 12:39:42,162 | INFO     | current chi2=18.088400166554887 (change=16.262676407911783 %)
[2025-11-25 07:40:26] 2025-11-25 12:39:42,162 | INFO     | right removable region: 1856
[2025-11-25 07:40:26] 2025-11-25 12:39:42,165 | INFO     | sum of square deviations: 1985592057022.1262
[2025-11-25 07:40:26] 2025-11-25 12:39:42,678 | INFO     | sum of deviations: 5160624416994.307
[2025-11-25 07:40:26] 2025-11-25 12:39:42,678 | INFO     | mean x: 1764017659.2724824
[2025-11-25 07:40:26] 2025-11-25 12:39:42,691 | INFO     | mean y: 3130874.100161551
[2025-11-25 07:40:26] 2025-11-25 12:39:42,691 | INFO     | intersect: -4581613798.027258
[2025-11-25 07:40:26] 2025-11-25 12:39:42,694 | INFO     | chi2: 18.940620434298054
[2025-11-25 07:40:26] 2025-11-25 12:39:42,722 | INFO     | current chi2=18.940620434298054 (change=12.317460486401277 %)
[2025-11-25 07:40:26] 2025-11-25 12:39:42,722 | INFO     | left removable region: 10
[2025-11-25 07:40:26] 2025-11-25 12:39:42,725 | INFO     | sum of square deviations: 1950516520519.8958
[2025-11-25 07:40:26] 2025-11-25 12:39:42,824 | INFO     | monitor loop #5711: job 0:6895339987 is in state 'finished'
[2025-11-25 07:40:26] 2025-11-25 12:39:42,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 07:40:26] 2025-11-25 12:39:43,384 | INFO     | sum of deviations: 5780617535771.154
[2025-11-25 07:40:26] 2025-11-25 12:39:43,389 | INFO     | mean x: 1764017628.7730227
[2025-11-25 07:40:26] 2025-11-25 12:39:43,389 | INFO     | mean y: 3140908.525460455
[2025-11-25 07:40:26] 2025-11-25 12:39:43,389 | INFO     | intersect: -5224762126.910928
[2025-11-25 07:40:26] 2025-11-25 12:39:43,392 | INFO     | chi2: 14.611652571800644
[2025-11-25 07:40:26] 2025-11-25 12:39:43,396 | INFO     | current memory leak: 2.96 B/s (using 1846 data points, chi2=14.61)
[2025-11-25 07:40:26] 2025-11-25 12:39:43,403 | INFO     | could have reported an average CPU frequency of 2651 MHz (65 samples)
[2025-11-25 07:40:26] 2025-11-25 12:39:43,403 | INFO     | ..............................
[2025-11-25 07:40:26] 2025-11-25 12:39:43,403 | INFO     | . Timing measurements:
[2025-11-25 07:40:26] 2025-11-25 12:39:43,405 | INFO     | . get job = 0 s
[2025-11-25 07:40:26] 2025-11-25 12:39:43,405 | INFO     | . initial setup = 3 s
[2025-11-25 07:40:26] 2025-11-25 12:39:43,405 | INFO     | . payload setup = 14 s
[2025-11-25 07:40:26] 2025-11-25 12:39:43,405 | INFO     | . stage-in = 0 s
[2025-11-25 07:40:26] 2025-11-25 12:39:43,405 | INFO     | . payload execution = 113592 s
[2025-11-25 07:40:26] 2025-11-25 12:39:43,405 | INFO     | . stage-out = 13 s
[2025-11-25 07:40:26] 2025-11-25 12:39:43,405 | INFO     | . log creation = 4 s
[2025-11-25 07:40:26] 2025-11-25 12:39:43,405 | INFO     | ..............................
[2025-11-25 07:40:26] 2025-11-25 12:39:43,999 | INFO     | 
[2025-11-25 07:40:26] 2025-11-25 12:39:43,999 | INFO     | job summary report
[2025-11-25 07:40:26] 2025-11-25 12:39:43,999 | INFO     | --------------------------------------------------
[2025-11-25 07:40:26] 2025-11-25 12:39:44,040 | INFO     | PanDA job id: 6895339987
[2025-11-25 07:40:26] 2025-11-25 12:39:44,040 | INFO     | task id: 47556149
[2025-11-25 07:40:26] 2025-11-25 12:39:44,040 | INFO     | errors: (none)
[2025-11-25 07:40:26] 2025-11-25 12:39:44,040 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 07:40:26] 2025-11-25 12:39:44,040 | INFO     | pilot state: finished 
[2025-11-25 07:40:26] 2025-11-25 12:39:44,040 | INFO     | transexitcode: 0
[2025-11-25 07:40:26] 2025-11-25 12:39:44,040 | INFO     | exeerrorcode: 0
[2025-11-25 07:40:26] 2025-11-25 12:39:44,040 | INFO     | exeerrordiag: 
[2025-11-25 07:40:26] 2025-11-25 12:39:44,040 | INFO     | exitcode: 0
[2025-11-25 07:40:26] 2025-11-25 12:39:44,041 | INFO     | exitmsg: OK
[2025-11-25 07:40:26] 2025-11-25 12:39:44,041 | INFO     | cpuconsumptiontime: 287185 s
[2025-11-25 07:40:26] 2025-11-25 12:39:44,041 | INFO     | nevents: 1000
[2025-11-25 07:40:26] 2025-11-25 12:39:44,041 | INFO     | neventsw: 0
[2025-11-25 07:40:26] 2025-11-25 12:39:44,041 | INFO     | pid: 607814
[2025-11-25 07:40:26] 2025-11-25 12:39:44,041 | INFO     | pgrp: 607814
[2025-11-25 07:40:26] 2025-11-25 12:39:44,041 | INFO     | corecount: 9
[2025-11-25 07:40:26] 2025-11-25 12:39:44,041 | INFO     | event service: False
[2025-11-25 07:40:26] 2025-11-25 12:39:44,041 | INFO     | sizes: {0: 2298803, 1: 2298803, 12: 2298831, 16: 2299121, 23: 2299149, 113612: 2374267, 113613: 2374394, 113628: 2384240, 113631: 2384296, 113674: 2384638}
[2025-11-25 07:40:26] 2025-11-25 12:39:44,041 | INFO     | --------------------------------------------------
[2025-11-25 07:40:26] 2025-11-25 12:39:44,041 | INFO     | 
[2025-11-25 07:40:26] 2025-11-25 12:39:44,042 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 07:40:26] 2025-11-25 12:39:44,226 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 07:40:26] 2025-11-25 12:39:44,226 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 07:40:26] 2025-11-25 12:39:44,226 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 07:40:26] 2025-11-25 12:39:44,226 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 07:40:26] 2025-11-25 12:39:44,226 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 07:40:26] 2025-11-25 12:39:44,226 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 07:40:26] 2025-11-25 12:39:44,226 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 07:40:26] 2025-11-25 12:39:44,227 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 07:40:26] 2025-11-25 12:39:44,227 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 07:40:26] 2025-11-25 12:39:44,227 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 07:40:26] 2025-11-25 12:39:44,227 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 07:40:26] 2025-11-25 12:39:44,227 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 07:40:26] 2025-11-25 12:39:44,227 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 07:40:26] 2025-11-25 12:39:44,227 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 07:40:26] 2025-11-25 12:39:44,227 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 07:40:26] 2025-11-25 12:39:44,227 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 07:40:26] 2025-11-25 12:39:44,227 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 07:40:26] 2025-11-25 12:39:44,228 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 07:40:26] 2025-11-25 12:39:44,228 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 07:40:26] 2025-11-25 12:39:44,228 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 07:40:26] 2025-11-25 12:39:44,228 | INFO     | job 6895339987 has completed (purged errors)
[2025-11-25 07:40:26] 2025-11-25 12:39:44,228 | INFO     | overall cleanup function is called
[2025-11-25 07:40:26] 2025-11-25 12:39:45,344 | INFO     | --- collectZombieJob: --- 10, [607814]
[2025-11-25 07:40:26] 2025-11-25 12:39:45,388 | INFO     | zombie collector waiting for pid 607814
[2025-11-25 07:40:26] 2025-11-25 12:39:45,388 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 07:40:26] 2025-11-25 12:39:45,388 | INFO     | collected zombie processes
[2025-11-25 07:40:26] 2025-11-25 12:39:45,388 | INFO     | will attempt to kill all subprocesses of pid=607814
[2025-11-25 07:40:26] 2025-11-25 12:39:47,398 | INFO     | PID=584652 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 07:40:26] 2025-11-25 12:39:47,398 | INFO     | .. there are 58 such processes running
[2025-11-25 07:40:26] 2025-11-25 12:39:48,950 | INFO     | process IDs to be killed: [607814] (in reverse order)
[2025-11-25 07:40:26] 2025-11-25 12:39:50,197 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 07:40:26] 2025-11-25 12:39:50,198 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 07:40:26] 2025-11-25 12:39:50,317 | INFO     | did not find any defunct processes belonging to 607814
[2025-11-25 07:40:26] 2025-11-25 12:39:50,419 | INFO     | did not find any defunct processes belonging to 607814
[2025-11-25 07:40:26] 2025-11-25 12:39:50,434 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 07:40:26] 2025-11-25 12:39:50,434 | INFO     | ready for new job
[2025-11-25 07:40:26] 2025-11-25 12:39:50,434 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 07:40:26] 2025-11-25 12:39:50,471 | INFO     | ***************************************
[2025-11-25 07:40:26] 2025-11-25 12:39:50,474 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 07:40:26] 2025-11-25 12:39:50,474 | INFO     | ***************************************
[2025-11-25 07:40:26] 2025-11-25 12:39:50,474 | INFO     | 
[2025-11-25 07:40:26] 2025-11-25 12:39:50,498 | INFO     | architecture information:
[2025-11-25 07:40:26] 2025-11-25 12:39:50,503 | INFO     | executing command: cat /etc/os-release
[2025-11-25 07:40:26] 2025-11-25 12:39:50,655 | INFO     | cat /etc/os-release:
[2025-11-25 07:40:26] NAME="CentOS Linux"
[2025-11-25 07:40:26] VERSION="7 (Core)"
[2025-11-25 07:40:26] ID="centos"
[2025-11-25 07:40:26] ID_LIKE="rhel fedora"
[2025-11-25 07:40:26] VERSION_ID="7"
[2025-11-25 07:40:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 07:40:26] ANSI_COLOR="0;31"
[2025-11-25 07:40:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 07:40:26] HOME_URL="https://www.centos.org/"
[2025-11-25 07:40:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 07:40:26] 
[2025-11-25 07:40:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 07:40:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 07:40:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 07:40:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 07:40:26] 
[2025-11-25 07:40:26] 2025-11-25 12:39:50,655 | INFO     | ***************************************
[2025-11-25 07:40:26] 2025-11-25 12:39:51,159 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 07:40:26] 2025-11-25 12:39:51,222 | INFO     | sufficient remaining disk space (69841453056 B)
[2025-11-25 07:40:26] 2025-11-25 12:39:51,222 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 07:40:26] 2025-11-25 12:39:51,223 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 07:40:26] 2025-11-25 12:39:51,223 | INFO     | update_server=False
[2025-11-25 07:40:26] 2025-11-25 12:39:51,223 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 07:40:26] 2025-11-25 12:39:51,571 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 07:40:26] 2025-11-25 12:39:51,571 | INFO     | aborting loop
[2025-11-25 07:40:26] 2025-11-25 12:39:51,689 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 07:40:26] 2025-11-25 12:39:51,702 | INFO     | all data control threads have been joined
[2025-11-25 07:40:26] 2025-11-25 12:39:51,703 | INFO     | all payload control threads have been joined
[2025-11-25 07:40:26] 2025-11-25 12:39:52,229 | INFO     | [job] retrieve thread has finished
[2025-11-25 07:40:26] 2025-11-25 12:39:52,237 | INFO     | [data] copytool_in thread has finished
[2025-11-25 07:40:26] 2025-11-25 12:39:52,380 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 07:40:26] 2025-11-25 12:39:52,514 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 07:40:26] 2025-11-25 12:39:52,593 | INFO     | [job] job monitor thread has finished
[2025-11-25 07:40:26] 2025-11-25 12:39:52,652 | INFO     | [job] validate thread has finished
[2025-11-25 07:40:26] 2025-11-25 12:39:52,652 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 07:40:26] 2025-11-25 12:39:52,709 | INFO     | [data] control thread has finished
[2025-11-25 07:40:26] 2025-11-25 12:39:52,714 | INFO     | [payload] control thread has finished
[2025-11-25 07:40:26] 2025-11-25 12:39:52,816 | INFO     | all job control threads have been joined
[2025-11-25 07:40:26] 2025-11-25 12:39:53,041 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 07:40:26] 2025-11-25 12:39:53,071 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 07:40:26] 2025-11-25 12:39:53,354 | INFO     | [payload] failed_post thread has finished
[2025-11-25 07:40:26] 2025-11-25 12:39:53,378 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 07:40:26] 2025-11-25 12:39:53,669 | INFO     | [payload] validate_post thread has finished
[2025-11-25 07:40:26] 2025-11-25 12:39:53,702 | INFO     | [data] copytool_out thread has finished
[2025-11-25 07:40:26] 2025-11-25 12:39:53,823 | INFO     | [job] control thread has finished
[2025-11-25 07:40:26] 2025-11-25 12:39:54,092 | INFO     | [job] queue monitor thread has finished
[2025-11-25 07:40:26] 2025-11-25 12:39:57,079 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 07:40:26] 2025-11-25 12:40:07,012 | INFO     | [monitor] cgroup control has ended
[2025-11-25 07:40:26] 2025-11-25 12:40:07,683 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139771639174976)>', '<ExcThread(monitor, started 139770776774400)>']
[2025-11-25 07:40:26] 2025-11-25 12:40:12,722 | INFO     | all workflow threads have been joined
[2025-11-25 07:40:26] 2025-11-25 12:40:12,723 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 07:40:26] 2025-11-25 12:40:12,723 | INFO     | traces error code: 0
[2025-11-25 07:40:26] 2025-11-25 12:40:12,723 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 07:40:26] 2025-11-25 12:40:22,984 | INFO     | PID=584652 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 07:40:26] 2025-11-25 12:40:22,985 | INFO     | .. there are 58 such processes running
[2025-11-25 07:40:26] 2025-11-25 12:40:22,985 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 07:40:26] 2025-11-25 12:40:22,985 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 07:40:26] 2025-11-25 12:40:22,987 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 07:40:26] 2025-11-25 12:40:22,987 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 07:40:26] 2025-11-25 12:40:22,987 | INFO     | [monitor] control thread has ended
[2025-11-25 07:40:26] 2025-11-25 12:40:23,520 [wrapper] ==== pilot stdout END ====
[2025-11-25 07:40:26] 2025-11-25 12:40:23,587 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 07:40:26] 2025-11-25 12:40:23,622 [wrapper] pilotpid: 584652
[2025-11-25 07:40:26] 2025-11-25 12:40:23,636 [wrapper] Pilot exit status: 0
[2025-11-25 07:40:26] 2025-11-25 12:40:23,800 [wrapper] pandaids: 6895339987
[2025-11-25 07:40:26] 2025-11-25 12:40:25,322 [wrapper] cleanup supervisor_pilot  200169 584653
[2025-11-25 07:40:26] 2025-11-25 12:40:25,344 [wrapper] Test setup, not cleaning
[2025-11-25 07:40:26] 2025-11-25 12:40:25,372 [wrapper] apfmon messages muted
[2025-11-25 07:40:26] 2025-11-25 12:40:25,385 [wrapper] ==== wrapper stdout END ====
[2025-11-25 07:40:26] 2025-11-25 12:40:25,416 [wrapper] ==== wrapper stderr END ====
[2025-11-25 07:40:26]  *** Error codes and diagnostics ***
[2025-11-25 07:40:26]     "exeErrorCode": 0,
[2025-11-25 07:40:26]     "exeErrorDiag": "",
[2025-11-25 07:40:26]     "pilotErrorCode": 0,
[2025-11-25 07:40:26]     "pilotErrorDiag": "",
[2025-11-25 07:40:26]  *** Listing of results directory ***
[2025-11-25 07:40:26] total 1329644
[2025-11-25 07:40:26] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 07:20 pilot3.tar.gz
[2025-11-25 07:40:26] -rwx------. 1 boincer umatlas     36292 Nov 22 07:25 runpilot2-wrapper.sh
[2025-11-25 07:40:26] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 07:25 queuedata.json
[2025-11-25 07:40:26] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 07:40:26] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:03 run_atlas
[2025-11-25 07:40:26] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:03 job.xml
[2025-11-25 07:40:26] -rw-r--r--. 2 boincer umatlas 406826777 Nov 24 00:03 EVNT.47483658._001087.pool.root.1
[2025-11-25 07:40:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:03 start_atlas.sh
[2025-11-25 07:40:26] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:03 shared
[2025-11-25 07:40:26] -rw-r--r--. 2 boincer umatlas    590100 Nov 24 00:03 input.tar.gz
[2025-11-25 07:40:26] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:03 boinc_lockfile
[2025-11-25 07:40:26] -rw-r--r--. 1 boincer umatlas      2783 Nov 24 00:03 pandaJob.out
[2025-11-25 07:40:26] -rw-------. 1 boincer umatlas        57 Nov 24 00:03 setup.sh.local
[2025-11-25 07:40:26] -rw-------. 1 boincer umatlas    989786 Nov 24 00:04 agis_schedconf.cvmfs.json
[2025-11-25 07:40:26] drwx------. 5 boincer umatlas      4096 Nov 24 00:04 pilot3
[2025-11-25 07:40:26] -rw-r--r--. 1 boincer umatlas       534 Nov 25 06:53 boinc_task_state.xml
[2025-11-25 07:40:26] -rw-------. 1 boincer umatlas 919724158 Nov 25 07:36 HITS.47556149._000732.pool.root.1
[2025-11-25 07:40:26] -rw-------. 1 boincer umatlas      1060 Nov 25 07:38 memory_monitor_summary.json
[2025-11-25 07:40:26] -rw-------. 1 boincer umatlas   1516240 Nov 25 07:38 agis_ddmendpoints.agis.ALL.json
[2025-11-25 07:40:26] -rw-------. 1 boincer umatlas   2761628 Nov 25 07:38 log.47556149._000732.job.log.tgz.1
[2025-11-25 07:40:26] -rw-r--r--. 1 boincer umatlas      6880 Nov 25 07:39 init_data.xml
[2025-11-25 07:40:26] -rw-------. 1 boincer umatlas        95 Nov 25 07:39 pilot_heartbeat.json
[2025-11-25 07:40:26] -rw-------. 1 boincer umatlas      8621 Nov 25 07:39 heartbeat.json
[2025-11-25 07:40:26] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 07:40 boinc_mmap_file
[2025-11-25 07:40:26] -rw-r--r--. 1 boincer umatlas        30 Nov 25 07:40 wrapper_checkpoint.txt
[2025-11-25 07:40:26] -rw-------. 1 boincer umatlas       822 Nov 25 07:40 pilotlog.txt
[2025-11-25 07:40:26] -rw-------. 1 boincer umatlas  12784487 Nov 25 07:40 log.47556149._000732.job.log.1
[2025-11-25 07:40:26] -rw-------. 1 boincer umatlas       353 Nov 25 07:40 output.list
[2025-11-25 07:40:26] -rw-r--r--. 1 boincer umatlas       620 Nov 25 07:40 runtime_log
[2025-11-25 07:40:26] -rw-------. 1 boincer umatlas  15564800 Nov 25 07:40 result.tar.gz
[2025-11-25 07:40:26] -rw-------. 1 boincer umatlas       664 Nov 25 07:40 tqMMDmYr1g8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmA9JKDmqPmeFn.diag
[2025-11-25 07:40:26] -rw-r--r--. 1 boincer umatlas      9349 Nov 25 07:40 runtime_log.err
[2025-11-25 07:40:26] -rw-r--r--. 1 boincer umatlas     16385 Nov 25 07:40 stderr.txt
[2025-11-25 07:40:26] HITS file was successfully produced:
[2025-11-25 07:40:26] -rw-------. 1 boincer umatlas 919724158 Nov 25 07:36 shared/HITS.pool.root.1
[2025-11-25 07:40:26]  *** Contents of shared directory: ***
[2025-11-25 07:40:26] total 1311268
[2025-11-25 07:40:26] -rw-r--r--. 2 boincer umatlas 406826777 Nov 24 00:03 ATLAS.root_0
[2025-11-25 07:40:26] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:03 start_atlas.sh
[2025-11-25 07:40:26] -rw-r--r--. 2 boincer umatlas    590100 Nov 24 00:03 input.tar.gz
[2025-11-25 07:40:26] -rw-------. 1 boincer umatlas 919724158 Nov 25 07:36 HITS.pool.root.1
[2025-11-25 07:40:26] -rw-------. 1 boincer umatlas  15564800 Nov 25 07:40 result.tar.gz
07:40:28 (579568): run_atlas exited; CPU time 292239.650698
07:40:28 (579568): called boinc_finish(0)

</stderr_txt>
]]>

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