Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:22 (793816): wrapper (7.7.26015): starting
00:02:22 (793816): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 00:02:22] Arguments: --nthreads 12
[2025-11-24 00:02:22] Threads: 12
[2025-11-24 00:02:22] Checking for CVMFS
[2025-11-24 00:02:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:02:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:02:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:02:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:02:24] 2.13.2.0 10481 31078 311720 153233 3 407 35515919 40960001 21477 16776704 0 57385565 99.776 33946463 33862 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:02:24] CVMFS is ok
[2025-11-24 00:02:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:02:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:02:24] Further information can be found at the LHC@home message board.
[2025-11-24 00:02:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:02:24] Checking for apptainer binary...
[2025-11-24 00:02:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:02:24] Running /usr/bin/apptainer --version
[2025-11-24 00:02:24] apptainer version 1.4.4-1.el9
[2025-11-24 00:02:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:02:25] c-211-35-3.aglt2.org
[2025-11-24 00:02:25] apptainer works
[2025-11-24 00:02:25] Set ATHENA_PROC_NUMBER=12
[2025-11-24 00:02:25] Set ATHENA_CORE_NUMBER=12
[2025-11-24 00:02:25] Starting ATLAS job with PandaID=6895368151
[2025-11-24 00:02:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 10:38:31]  *** The last 200 lines of the pilot log: ***
[2025-11-25 10:38:31] 2025-11-25 15:37:14,390 | INFO     | time since job start (124425s) is within the limit (172800.0s)
[2025-11-25 10:38:31] 2025-11-25 15:37:16,398 | INFO     | time since job start (124427s) is within the limit (172800.0s)
[2025-11-25 10:38:31] 2025-11-25 15:37:16,881 | INFO     | monitor loop #6874: job 0:6895368151 is in state 'finished'
[2025-11-25 10:38:31] 2025-11-25 15:37:16,881 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 10:38:31] 2025-11-25 15:37:18,430 | INFO     | time since job start (124429s) is within the limit (172800.0s)
[2025-11-25 10:38:31] 2025-11-25 15:37:18,430 | INFO     | 124437s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 10:38:31] 2025-11-25 15:37:19,389 | INFO     | monitor loop #6875: job 0:6895368151 is in state 'finished'
[2025-11-25 10:38:31] 2025-11-25 15:37:19,389 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 10:38:31] 2025-11-25 15:37:20,455 | INFO     | time since job start (124431s) is within the limit (172800.0s)
[2025-11-25 10:38:31] 2025-11-25 15:37:21,917 | INFO     | monitor loop #6876: job 0:6895368151 is in state 'finished'
[2025-11-25 10:38:31] 2025-11-25 15:37:21,917 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 10:38:31] 2025-11-25 15:37:22,462 | INFO     | time since job start (124433s) is within the limit (172800.0s)
[2025-11-25 10:38:31] 2025-11-25 15:37:24,461 | INFO     | monitor loop #6877: job 0:6895368151 is in state 'finished'
[2025-11-25 10:38:31] 2025-11-25 15:37:24,466 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 10:38:31] 2025-11-25 15:37:24,486 | INFO     | time since job start (124435s) is within the limit (172800.0s)
[2025-11-25 10:38:31] 2025-11-25 15:37:24,541 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 10:38:31] 2025-11-25 15:37:24,559 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2602.5534062499996
[2025-11-25 10:38:31] 2025-11-25 15:37:24,594 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6895368151/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 10:38:31] 2025-11-25 15:37:24,599 | INFO     | extracted standard info from prmon json
[2025-11-25 10:38:31] 2025-11-25 15:37:24,599 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 10:38:31] 2025-11-25 15:37:24,599 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 10:38:31] 2025-11-25 15:37:24,716 | INFO     | fitting pss+swap vs Time
[2025-11-25 10:38:31] 2025-11-25 15:37:24,718 | INFO     | sum of square deviations: 2620525955155.3975
[2025-11-25 10:38:31] 2025-11-25 15:37:25,120 | INFO     | sum of deviations: 15107033713820.928
[2025-11-25 10:38:31] 2025-11-25 15:37:25,121 | INFO     | mean x: 1764022853.7236133
[2025-11-25 10:38:31] 2025-11-25 15:37:25,121 | INFO     | mean y: 3423184.5149729997
[2025-11-25 10:38:31] 2025-11-25 15:37:25,129 | INFO     | intersect: -10165967685.560547
[2025-11-25 10:38:31] 2025-11-25 15:37:25,132 | INFO     | chi2: 19.54544103006831
[2025-11-25 10:38:31] 2025-11-25 15:37:25,143 | INFO     | sum of square deviations: 2601277591052.2793
[2025-11-25 10:38:31] 2025-11-25 15:37:25,409 | INFO     | sum of deviations: 15944112400281.338
[2025-11-25 10:38:31] 2025-11-25 15:37:25,410 | INFO     | mean x: 1764022701.2396653
[2025-11-25 10:38:31] 2025-11-25 15:37:25,410 | INFO     | mean y: 3429815.0895669293
[2025-11-25 10:38:31] 2025-11-25 15:37:25,410 | INFO     | intersect: -10808863468.01044
[2025-11-25 10:38:31] 2025-11-25 15:37:25,412 | INFO     | chi2: 16.12239042125686
[2025-11-25 10:38:31] 2025-11-25 15:37:25,412 | INFO     | current chi2=16.12239042125686 (change=17.51329429479488 %)
[2025-11-25 10:38:31] 2025-11-25 15:37:25,413 | INFO     | right removable region: 2031
[2025-11-25 10:38:31] 2025-11-25 15:37:25,423 | INFO     | sum of square deviations: 2601269485128.2783
[2025-11-25 10:38:31] 2025-11-25 15:37:25,810 | INFO     | sum of deviations: 14144213883090.145
[2025-11-25 10:38:31] 2025-11-25 15:37:25,828 | INFO     | mean x: 1764023006.2396653
[2025-11-25 10:38:31] 2025-11-25 15:37:25,829 | INFO     | mean y: 3430809.816929134
[2025-11-25 10:38:31] 2025-11-25 15:37:25,829 | INFO     | intersect: -9588316157.420137
[2025-11-25 10:38:31] 2025-11-25 15:37:25,831 | INFO     | chi2: 15.541468762831395
[2025-11-25 10:38:31] 2025-11-25 15:37:25,832 | INFO     | current chi2=15.541468762831395 (change=20.48545367217494 %)
[2025-11-25 10:38:31] 2025-11-25 15:37:25,836 | INFO     | left removable region: 10
[2025-11-25 10:38:31] 2025-11-25 15:37:25,839 | INFO     | sum of square deviations: 2559247362584.011
[2025-11-25 10:38:31] 2025-11-25 15:37:26,297 | INFO     | sum of deviations: 14346358003148.99
[2025-11-25 10:38:31] 2025-11-25 15:37:26,298 | INFO     | mean x: 1764022975.7753587
[2025-11-25 10:38:31] 2025-11-25 15:37:26,298 | INFO     | mean y: 3445073.654131618
[2025-11-25 10:38:31] 2025-11-25 15:37:26,298 | INFO     | intersect: -9885128225.763605
[2025-11-25 10:38:31] 2025-11-25 15:37:26,300 | INFO     | chi2: 8.901070930177344
[2025-11-25 10:38:31] 2025-11-25 15:37:26,304 | INFO     | current memory leak: 5.61 B/s (using 2021 data points, chi2=8.90)
[2025-11-25 10:38:31] 2025-11-25 15:37:26,306 | INFO     | could have reported an average CPU frequency of 2579 MHz (71 samples)
[2025-11-25 10:38:31] 2025-11-25 15:37:26,307 | INFO     | ..............................
[2025-11-25 10:38:31] 2025-11-25 15:37:26,307 | INFO     | . Timing measurements:
[2025-11-25 10:38:31] 2025-11-25 15:37:26,307 | INFO     | . get job = 0 s
[2025-11-25 10:38:31] 2025-11-25 15:37:26,307 | INFO     | . initial setup = 8 s
[2025-11-25 10:38:31] 2025-11-25 15:37:26,307 | INFO     | . payload setup = 47 s
[2025-11-25 10:38:31] 2025-11-25 15:37:26,307 | INFO     | . stage-in = 0 s
[2025-11-25 10:38:31] 2025-11-25 15:37:26,307 | INFO     | . payload execution = 124269 s
[2025-11-25 10:38:31] 2025-11-25 15:37:26,307 | INFO     | . stage-out = 13 s
[2025-11-25 10:38:31] 2025-11-25 15:37:26,307 | INFO     | . log creation = 3 s
[2025-11-25 10:38:31] 2025-11-25 15:37:26,307 | INFO     | ..............................
[2025-11-25 10:38:31] 2025-11-25 15:37:26,826 | INFO     | 
[2025-11-25 10:38:31] 2025-11-25 15:37:26,826 | INFO     | job summary report
[2025-11-25 10:38:31] 2025-11-25 15:37:26,826 | INFO     | --------------------------------------------------
[2025-11-25 10:38:31] 2025-11-25 15:37:26,826 | INFO     | PanDA job id: 6895368151
[2025-11-25 10:38:31] 2025-11-25 15:37:26,827 | INFO     | task id: 47556137
[2025-11-25 10:38:31] 2025-11-25 15:37:26,827 | INFO     | errors: (none)
[2025-11-25 10:38:31] 2025-11-25 15:37:26,827 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 10:38:31] 2025-11-25 15:37:26,827 | INFO     | pilot state: finished 
[2025-11-25 10:38:31] 2025-11-25 15:37:26,827 | INFO     | transexitcode: 0
[2025-11-25 10:38:31] 2025-11-25 15:37:26,827 | INFO     | exeerrorcode: 0
[2025-11-25 10:38:31] 2025-11-25 15:37:26,827 | INFO     | exeerrordiag: 
[2025-11-25 10:38:31] 2025-11-25 15:37:26,827 | INFO     | exitcode: 0
[2025-11-25 10:38:31] 2025-11-25 15:37:26,827 | INFO     | exitmsg: OK
[2025-11-25 10:38:31] 2025-11-25 15:37:26,827 | INFO     | cpuconsumptiontime: 296650 s
[2025-11-25 10:38:31] 2025-11-25 15:37:26,827 | INFO     | nevents: 1000
[2025-11-25 10:38:31] 2025-11-25 15:37:26,827 | INFO     | neventsw: 0
[2025-11-25 10:38:31] 2025-11-25 15:37:26,827 | INFO     | pid: 832524
[2025-11-25 10:38:31] 2025-11-25 15:37:26,827 | INFO     | pgrp: 832524
[2025-11-25 10:38:31] 2025-11-25 15:37:26,828 | INFO     | corecount: 12
[2025-11-25 10:38:31] 2025-11-25 15:37:26,828 | INFO     | event service: False
[2025-11-25 10:38:31] 2025-11-25 15:37:26,828 | INFO     | sizes: {0: 2298636, 1: 2298835, 13: 2298835, 24: 2298891, 31: 2299181, 36: 2299209, 124319: 2380338, 124334: 2390184, 124373: 2390374}
[2025-11-25 10:38:31] 2025-11-25 15:37:26,828 | INFO     | --------------------------------------------------
[2025-11-25 10:38:31] 2025-11-25 15:37:26,828 | INFO     | 
[2025-11-25 10:38:31] 2025-11-25 15:37:26,828 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-25 10:38:31] 2025-11-25 15:37:26,907 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 10:38:31] 2025-11-25 15:37:26,907 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 10:38:31] 2025-11-25 15:37:26,907 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 10:38:31] 2025-11-25 15:37:26,908 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 10:38:31] 2025-11-25 15:37:26,908 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 10:38:31] 2025-11-25 15:37:26,908 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 10:38:31] 2025-11-25 15:37:26,908 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 10:38:31] 2025-11-25 15:37:26,908 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 10:38:31] 2025-11-25 15:37:26,908 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 10:38:31] 2025-11-25 15:37:26,908 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 10:38:31] 2025-11-25 15:37:26,908 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 10:38:31] 2025-11-25 15:37:26,908 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 10:38:31] 2025-11-25 15:37:26,908 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 10:38:31] 2025-11-25 15:37:26,908 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 10:38:31] 2025-11-25 15:37:26,908 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 10:38:31] 2025-11-25 15:37:26,909 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 10:38:31] 2025-11-25 15:37:26,909 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 10:38:31] 2025-11-25 15:37:26,909 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 10:38:31] 2025-11-25 15:37:26,909 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 10:38:31] 2025-11-25 15:37:26,909 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 10:38:31] 2025-11-25 15:37:26,909 | INFO     | job 6895368151 has completed (purged errors)
[2025-11-25 10:38:31] 2025-11-25 15:37:26,909 | INFO     | overall cleanup function is called
[2025-11-25 10:38:31] 2025-11-25 15:37:27,344 | INFO     | PID=804023 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 10:38:31] 2025-11-25 15:37:27,344 | INFO     | .. there are 17 such processes running
[2025-11-25 10:38:31] 2025-11-25 15:37:27,994 | INFO     | --- collectZombieJob: --- 10, [832524]
[2025-11-25 10:38:31] 2025-11-25 15:37:27,994 | INFO     | zombie collector waiting for pid 832524
[2025-11-25 10:38:31] 2025-11-25 15:37:27,994 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 10:38:31] 2025-11-25 15:37:27,994 | INFO     | collected zombie processes
[2025-11-25 10:38:31] 2025-11-25 15:37:27,994 | INFO     | will attempt to kill all subprocesses of pid=832524
[2025-11-25 10:38:31] 2025-11-25 15:37:28,717 | INFO     | process IDs to be killed: [832524] (in reverse order)
[2025-11-25 10:38:31] 2025-11-25 15:37:28,873 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 10:38:31] 2025-11-25 15:37:28,873 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 10:38:31] 2025-11-25 15:37:28,912 | INFO     | did not find any defunct processes belonging to 832524
[2025-11-25 10:38:31] 2025-11-25 15:37:28,946 | INFO     | did not find any defunct processes belonging to 832524
[2025-11-25 10:38:31] 2025-11-25 15:37:28,947 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 10:38:31] 2025-11-25 15:37:28,948 | INFO     | ready for new job
[2025-11-25 10:38:31] 2025-11-25 15:37:28,948 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 10:38:31] 2025-11-25 15:37:28,964 | INFO     | ***************************************
[2025-11-25 10:38:31] 2025-11-25 15:37:28,964 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 10:38:31] 2025-11-25 15:37:28,964 | INFO     | ***************************************
[2025-11-25 10:38:31] 2025-11-25 15:37:28,964 | INFO     | 
[2025-11-25 10:38:31] 2025-11-25 15:37:28,977 | INFO     | architecture information:
[2025-11-25 10:38:31] 2025-11-25 15:37:28,978 | INFO     | executing command: cat /etc/os-release
[2025-11-25 10:38:31] 2025-11-25 15:37:29,029 | INFO     | cat /etc/os-release:
[2025-11-25 10:38:31] NAME="CentOS Linux"
[2025-11-25 10:38:31] VERSION="7 (Core)"
[2025-11-25 10:38:31] ID="centos"
[2025-11-25 10:38:31] ID_LIKE="rhel fedora"
[2025-11-25 10:38:31] VERSION_ID="7"
[2025-11-25 10:38:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 10:38:31] ANSI_COLOR="0;31"
[2025-11-25 10:38:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 10:38:31] HOME_URL="https://www.centos.org/"
[2025-11-25 10:38:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 10:38:31] 
[2025-11-25 10:38:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 10:38:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 10:38:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 10:38:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 10:38:31] 
[2025-11-25 10:38:31] 2025-11-25 15:37:29,030 | INFO     | ***************************************
[2025-11-25 10:38:31] 2025-11-25 15:37:29,533 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-25 10:38:31] 2025-11-25 15:37:29,723 | INFO     | sufficient remaining disk space (123205582848 B)
[2025-11-25 10:38:31] 2025-11-25 15:37:29,723 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 10:38:31] 2025-11-25 15:37:29,723 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 10:38:31] 2025-11-25 15:37:29,723 | INFO     | update_server=False
[2025-11-25 10:38:31] 2025-11-25 15:37:29,724 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 10:38:31] 2025-11-25 15:37:29,759 | INFO     | all payload control threads have been joined
[2025-11-25 10:38:31] 2025-11-25 15:37:29,894 | INFO     | all data control threads have been joined
[2025-11-25 10:38:31] 2025-11-25 15:37:30,103 | INFO     | all job control threads have been joined
[2025-11-25 10:38:31] 2025-11-25 15:37:30,217 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 10:38:31] 2025-11-25 15:37:30,527 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 10:38:31] 2025-11-25 15:37:30,527 | INFO     | aborting loop
[2025-11-25 10:38:31] 2025-11-25 15:37:30,729 | INFO     | [job] retrieve thread has finished
[2025-11-25 10:38:31] 2025-11-25 15:37:30,776 | INFO     | [payload] control thread has finished
[2025-11-25 10:38:31] 2025-11-25 15:37:30,900 | INFO     | [data] control thread has finished
[2025-11-25 10:38:31] 2025-11-25 15:37:30,960 | INFO     | [payload] failed_post thread has finished
[2025-11-25 10:38:31] 2025-11-25 15:37:31,087 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 10:38:31] 2025-11-25 15:37:31,110 | INFO     | [job] control thread has finished
[2025-11-25 10:38:31] 2025-11-25 15:37:31,544 | INFO     | [job] job monitor thread has finished
[2025-11-25 10:38:31] 2025-11-25 15:37:31,625 | INFO     | [payload] validate_post thread has finished
[2025-11-25 10:38:31] 2025-11-25 15:37:31,688 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 10:38:31] 2025-11-25 15:37:31,867 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 10:38:31] 2025-11-25 15:37:31,891 | INFO     | [job] validate thread has finished
[2025-11-25 10:38:31] 2025-11-25 15:37:31,897 | INFO     | [data] copytool_in thread has finished
[2025-11-25 10:38:31] 2025-11-25 15:37:31,898 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 10:38:31] 2025-11-25 15:37:31,899 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 10:38:31] 2025-11-25 15:37:31,939 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 10:38:31] 2025-11-25 15:37:32,722 | INFO     | [job] queue monitor thread has finished
[2025-11-25 10:38:31] 2025-11-25 15:37:33,103 | INFO     | [data] copytool_out thread has finished
[2025-11-25 10:38:31] 2025-11-25 15:37:34,238 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 10:38:31] 2025-11-25 15:38:05,703 | INFO     | PID=804023 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 10:38:31] 2025-11-25 15:38:05,703 | INFO     | .. there are 17 such processes running
[2025-11-25 10:38:31] 2025-11-25 15:38:05,704 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 10:38:31] 2025-11-25 15:38:05,704 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 10:38:31] 2025-11-25 15:38:05,704 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 10:38:31] 2025-11-25 15:38:23,239 | INFO     | [monitor] cgroup control has ended
[2025-11-25 10:38:31] 2025-11-25 15:38:23,514 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140148953704256)>', '<ExcThread(monitor, started 140148465460992)>']
[2025-11-25 10:38:31] 2025-11-25 15:38:23,830 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 10:38:31] 2025-11-25 15:38:23,830 | INFO     | [monitor] control thread has ended
[2025-11-25 10:38:31] 2025-11-25 15:38:28,548 | INFO     | all workflow threads have been joined
[2025-11-25 10:38:31] 2025-11-25 15:38:28,548 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 10:38:31] 2025-11-25 15:38:28,549 | INFO     | traces error code: 0
[2025-11-25 10:38:31] 2025-11-25 15:38:28,549 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 10:38:31] 2025-11-25 15:38:29,626 [wrapper] ==== pilot stdout END ====
[2025-11-25 10:38:31] 2025-11-25 15:38:29,645 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 10:38:31] 2025-11-25 15:38:29,673 [wrapper] pilotpid: 804023
[2025-11-25 10:38:31] 2025-11-25 15:38:29,694 [wrapper] Pilot exit status: 0
[2025-11-25 10:38:31] 2025-11-25 15:38:29,759 [wrapper] pandaids: 6895368151
[2025-11-25 10:38:31] 2025-11-25 15:38:30,100 [wrapper] cleanup supervisor_pilot  538793 804024
[2025-11-25 10:38:31] 2025-11-25 15:38:30,121 [wrapper] Test setup, not cleaning
[2025-11-25 10:38:31] 2025-11-25 15:38:30,159 [wrapper] apfmon messages muted
[2025-11-25 10:38:31] 2025-11-25 15:38:30,212 [wrapper] ==== wrapper stdout END ====
[2025-11-25 10:38:31] 2025-11-25 15:38:30,255 [wrapper] ==== wrapper stderr END ====
[2025-11-25 10:38:31]  *** Error codes and diagnostics ***
[2025-11-25 10:38:31]     "exeErrorCode": 0,
[2025-11-25 10:38:31]     "exeErrorDiag": "",
[2025-11-25 10:38:31]     "pilotErrorCode": 0,
[2025-11-25 10:38:31]     "pilotErrorDiag": "",
[2025-11-25 10:38:31]  *** Listing of results directory ***
[2025-11-25 10:38:31] total 1334128
[2025-11-25 10:38:31] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 14:15 pilot3.tar.gz
[2025-11-25 10:38:31] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 14:28 queuedata.json
[2025-11-25 10:38:31] -rwx------. 1 boincer umatlas     36292 Nov 23 14:29 runpilot2-wrapper.sh
[2025-11-25 10:38:31] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 10:38:31] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:02 run_atlas
[2025-11-25 10:38:31] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:02 job.xml
[2025-11-25 10:38:31] -rw-r--r--. 2 boincer umatlas 410365298 Nov 24 00:02 EVNT.47483658._000867.pool.root.1
[2025-11-25 10:38:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:02 start_atlas.sh
[2025-11-25 10:38:31] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:02 shared
[2025-11-25 10:38:31] -rw-r--r--. 2 boincer umatlas    590105 Nov 24 00:02 input.tar.gz
[2025-11-25 10:38:31] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:02 boinc_lockfile
[2025-11-25 10:38:31] -rw-r--r--. 1 boincer umatlas      2786 Nov 24 00:02 pandaJob.out
[2025-11-25 10:38:31] -rw-------. 1 boincer umatlas        57 Nov 24 00:02 setup.sh.local
[2025-11-25 10:38:31] -rw-------. 1 boincer umatlas    989786 Nov 24 00:03 agis_schedconf.cvmfs.json
[2025-11-25 10:38:31] drwx------. 5 boincer umatlas      4096 Nov 24 00:03 pilot3
[2025-11-25 10:38:31] -rw-r--r--. 1 boincer umatlas       533 Nov 25 10:04 boinc_task_state.xml
[2025-11-25 10:38:31] -rw-------. 1 boincer umatlas 915631291 Nov 25 10:35 HITS.47556137._008534.pool.root.1
[2025-11-25 10:38:31] -rw-------. 1 boincer umatlas      1062 Nov 25 10:36 memory_monitor_summary.json
[2025-11-25 10:38:31] -rw-r--r--. 1 boincer umatlas      6880 Nov 25 10:36 init_data.xml
[2025-11-25 10:38:31] -rw-------. 1 boincer umatlas   1516240 Nov 25 10:36 agis_ddmendpoints.agis.ALL.json
[2025-11-25 10:38:31] -rw-------. 1 boincer umatlas   3282887 Nov 25 10:36 log.47556137._008534.job.log.tgz.1
[2025-11-25 10:38:31] -rw-------. 1 boincer umatlas      8640 Nov 25 10:37 heartbeat.json
[2025-11-25 10:38:31] -rw-------. 1 boincer umatlas        95 Nov 25 10:38 pilot_heartbeat.json
[2025-11-25 10:38:31] -rw-r--r--. 1 boincer umatlas        29 Nov 25 10:38 wrapper_checkpoint.txt
[2025-11-25 10:38:31] -rw-------. 1 boincer umatlas      4824 Nov 25 10:38 pilotlog.txt
[2025-11-25 10:38:31] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 10:38 boinc_mmap_file
[2025-11-25 10:38:31] -rw-------. 1 boincer umatlas  14835643 Nov 25 10:38 log.47556137._008534.job.log.1
[2025-11-25 10:38:31] -rw-------. 1 boincer umatlas       353 Nov 25 10:38 output.list
[2025-11-25 10:38:31] -rw-r--r--. 1 boincer umatlas       620 Nov 25 10:38 runtime_log
[2025-11-25 10:38:31] -rw-------. 1 boincer umatlas  18135040 Nov 25 10:38 result.tar.gz
[2025-11-25 10:38:31] -rw-r--r--. 1 boincer umatlas      9356 Nov 25 10:38 runtime_log.err
[2025-11-25 10:38:31] -rw-------. 1 boincer umatlas       666 Nov 25 10:38 FPVMDmcxUh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmFiIKDmFTcptm.diag
[2025-11-25 10:38:31] -rw-r--r--. 1 boincer umatlas     21875 Nov 25 10:38 stderr.txt
[2025-11-25 10:38:31] HITS file was successfully produced:
[2025-11-25 10:38:31] -rw-------. 1 boincer umatlas 915631291 Nov 25 10:35 shared/HITS.pool.root.1
[2025-11-25 10:38:31]  *** Contents of shared directory: ***
[2025-11-25 10:38:31] total 1313236
[2025-11-25 10:38:31] -rw-r--r--. 2 boincer umatlas 410365298 Nov 24 00:02 ATLAS.root_0
[2025-11-25 10:38:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:02 start_atlas.sh
[2025-11-25 10:38:31] -rw-r--r--. 2 boincer umatlas    590105 Nov 24 00:02 input.tar.gz
[2025-11-25 10:38:31] -rw-------. 1 boincer umatlas 915631291 Nov 25 10:35 HITS.pool.root.1
[2025-11-25 10:38:31] -rw-------. 1 boincer umatlas  18135040 Nov 25 10:38 result.tar.gz
10:38:33 (793816): run_atlas exited; CPU time 298899.204278
10:38:33 (793816): called boinc_finish(0)

</stderr_txt>
]]>

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