Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:09:32 (3052558): wrapper (7.7.26015): starting
23:09:32 (3052558): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 23:09:32] Arguments: --nthreads 9
[2025-11-24 23:09:32] Threads: 9
[2025-11-24 23:09:32] Checking for CVMFS
[2025-11-24 23:09:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 23:09:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 23:09:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 23:09:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 23:09:33] 2.13.2.0 5986 33655 363612 153268 1 187 25134630 40960000 14641 16776704 0 67189934 99.785 58602327 35763 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 23:09:33] CVMFS is ok
[2025-11-24 23:09:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 23:09:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 23:09:33] Further information can be found at the LHC@home message board.
[2025-11-24 23:09:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 23:09:33] Checking for apptainer binary...
[2025-11-24 23:09:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 23:09:33] Running /usr/bin/apptainer --version
[2025-11-24 23:09:33] apptainer version 1.4.4-1.el9
[2025-11-24 23:09:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 23:09:33] c-210-31-1.aglt2.org
[2025-11-24 23:09:33] apptainer works
[2025-11-24 23:09:33] Set ATHENA_PROC_NUMBER=9
[2025-11-24 23:09:33] Set ATHENA_CORE_NUMBER=9
[2025-11-24 23:09:33] Starting ATLAS job with PandaID=6895368132
[2025-11-24 23:09:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 04:20:17]  *** The last 200 lines of the pilot log: ***
[2025-11-26 04:20:17] 2025-11-26 09:18:58,270 | INFO     | .. there are 20 such processes running
[2025-11-26 04:20:17] 2025-11-26 09:18:58,736 | INFO     | monitor loop #6369: job 0:6895368132 is in state 'finished'
[2025-11-26 04:20:17] 2025-11-26 09:18:58,736 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:20:17] 2025-11-26 09:18:59,271 | INFO     | time since job start (104945s) is within the limit (172800.0s)
[2025-11-26 04:20:17] 2025-11-26 09:19:01,241 | INFO     | monitor loop #6370: job 0:6895368132 is in state 'finished'
[2025-11-26 04:20:17] 2025-11-26 09:19:01,241 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:20:17] 2025-11-26 09:19:01,278 | INFO     | time since job start (104947s) is within the limit (172800.0s)
[2025-11-26 04:20:17] 2025-11-26 09:19:03,286 | INFO     | time since job start (104949s) is within the limit (172800.0s)
[2025-11-26 04:20:17] 2025-11-26 09:19:03,751 | INFO     | monitor loop #6371: job 0:6895368132 is in state 'finished'
[2025-11-26 04:20:17] 2025-11-26 09:19:03,751 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:20:17] 2025-11-26 09:19:05,298 | INFO     | time since job start (104951s) is within the limit (172800.0s)
[2025-11-26 04:20:17] 2025-11-26 09:19:06,256 | INFO     | monitor loop #6372: job 0:6895368132 is in state 'finished'
[2025-11-26 04:20:17] 2025-11-26 09:19:06,256 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:20:17] 2025-11-26 09:19:07,305 | INFO     | time since job start (104953s) is within the limit (172800.0s)
[2025-11-26 04:20:17] 2025-11-26 09:19:08,762 | INFO     | monitor loop #6373: job 0:6895368132 is in state 'finished'
[2025-11-26 04:20:17] 2025-11-26 09:19:08,762 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 04:20:17] 2025-11-26 09:19:09,312 | INFO     | time since job start (104955s) is within the limit (172800.0s)
[2025-11-26 04:20:17] 2025-11-26 09:19:09,547 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 04:20:17] 2025-11-26 09:19:09,553 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2941.5353571428564
[2025-11-26 04:20:17] 2025-11-26 09:19:09,591 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895368132/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 04:20:17] 2025-11-26 09:19:09,612 | INFO     | extracted standard info from prmon json
[2025-11-26 04:20:17] 2025-11-26 09:19:09,613 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 04:20:17] 2025-11-26 09:19:09,621 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 04:20:17] 2025-11-26 09:19:09,715 | INFO     | fitting pss+swap vs Time
[2025-11-26 04:20:17] 2025-11-26 09:19:09,720 | INFO     | sum of square deviations: 1575140609427.7002
[2025-11-26 04:20:17] 2025-11-26 09:19:09,826 | INFO     | sum of deviations: 4193513347176.217
[2025-11-26 04:20:17] 2025-11-26 09:19:09,826 | INFO     | mean x: 1764096237.949971
[2025-11-26 04:20:17] 2025-11-26 09:19:09,826 | INFO     | mean y: 3094100.363001745
[2025-11-26 04:20:17] 2025-11-26 09:19:09,826 | INFO     | intersect: -4693477796.31002
[2025-11-26 04:20:17] 2025-11-26 09:19:09,833 | INFO     | chi2: 21.294238161720497
[2025-11-26 04:20:17] 2025-11-26 09:19:09,835 | INFO     | sum of square deviations: 1561438882482.3289
[2025-11-26 04:20:17] 2025-11-26 09:19:09,909 | INFO     | sum of deviations: 4828244074116.795
[2025-11-26 04:20:17] 2025-11-26 09:19:09,909 | INFO     | mean x: 1764096085.4644108
[2025-11-26 04:20:17] 2025-11-26 09:19:09,909 | INFO     | mean y: 3101163.103267211
[2025-11-26 04:20:17] 2025-11-26 09:19:09,910 | INFO     | intersect: -5451794680.9629
[2025-11-26 04:20:17] 2025-11-26 09:19:09,911 | INFO     | chi2: 17.82237025321375
[2025-11-26 04:20:17] 2025-11-26 09:19:09,911 | INFO     | current chi2=17.82237025321375 (change=16.304259782103568 %)
[2025-11-26 04:20:17] 2025-11-26 09:19:09,911 | INFO     | right removable region: 1713
[2025-11-26 04:20:17] 2025-11-26 09:19:09,913 | INFO     | sum of square deviations: 1561433796616.2568
[2025-11-26 04:20:17] 2025-11-26 09:19:10,020 | INFO     | sum of deviations: 3680417941425.6987
[2025-11-26 04:20:17] 2025-11-26 09:19:10,025 | INFO     | mean x: 1764096390.4638274
[2025-11-26 04:20:17] 2025-11-26 09:19:10,025 | INFO     | mean y: 3099805.8016336057
[2025-11-26 04:20:17] 2025-11-26 09:19:10,025 | INFO     | intersect: -4155009247.5167704
[2025-11-26 04:20:17] 2025-11-26 09:19:10,027 | INFO     | chi2: 19.136163201503923
[2025-11-26 04:20:17] 2025-11-26 09:19:10,027 | INFO     | current chi2=19.136163201503923 (change=10.13454880999701 %)
[2025-11-26 04:20:17] 2025-11-26 09:19:10,027 | INFO     | left removable region: 10
[2025-11-26 04:20:17] 2025-11-26 09:19:10,034 | INFO     | sum of square deviations: 1531568018900.2788
[2025-11-26 04:20:17] 2025-11-26 09:19:10,143 | INFO     | sum of deviations: 4246510541843.8867
[2025-11-26 04:20:17] 2025-11-26 09:19:10,143 | INFO     | mean x: 1764096359.979448
[2025-11-26 04:20:17] 2025-11-26 09:19:10,143 | INFO     | mean y: 3110320.739870816
[2025-11-26 04:20:17] 2025-11-26 09:19:10,143 | INFO     | intersect: -4888121212.587748
[2025-11-26 04:20:17] 2025-11-26 09:19:10,145 | INFO     | chi2: 14.902194703496196
[2025-11-26 04:20:17] 2025-11-26 09:19:10,146 | INFO     | current memory leak: 2.77 B/s (using 1703 data points, chi2=14.90)
[2025-11-26 04:20:17] 2025-11-26 09:19:10,152 | INFO     | could have reported an average CPU frequency of 2817 MHz (60 samples)
[2025-11-26 04:20:17] 2025-11-26 09:19:10,152 | INFO     | ..............................
[2025-11-26 04:20:17] 2025-11-26 09:19:10,152 | INFO     | . Timing measurements:
[2025-11-26 04:20:17] 2025-11-26 09:19:10,152 | INFO     | . get job = 0 s
[2025-11-26 04:20:17] 2025-11-26 09:19:10,153 | INFO     | . initial setup = 3 s
[2025-11-26 04:20:17] 2025-11-26 09:19:10,153 | INFO     | . payload setup = 10 s
[2025-11-26 04:20:17] 2025-11-26 09:19:10,153 | INFO     | . stage-in = 0 s
[2025-11-26 04:20:17] 2025-11-26 09:19:10,153 | INFO     | . payload execution = 104860 s
[2025-11-26 04:20:17] 2025-11-26 09:19:10,153 | INFO     | . stage-out = 18 s
[2025-11-26 04:20:17] 2025-11-26 09:19:10,153 | INFO     | . log creation = 5 s
[2025-11-26 04:20:17] 2025-11-26 09:19:10,153 | INFO     | ..............................
[2025-11-26 04:20:17] 2025-11-26 09:19:10,306 | INFO     | 
[2025-11-26 04:20:17] 2025-11-26 09:19:10,307 | INFO     | job summary report
[2025-11-26 04:20:17] 2025-11-26 09:19:10,307 | INFO     | --------------------------------------------------
[2025-11-26 04:20:17] 2025-11-26 09:19:10,307 | INFO     | PanDA job id: 6895368132
[2025-11-26 04:20:17] 2025-11-26 09:19:10,307 | INFO     | task id: 47556137
[2025-11-26 04:20:17] 2025-11-26 09:19:10,307 | INFO     | errors: (none)
[2025-11-26 04:20:17] 2025-11-26 09:19:10,307 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 04:20:17] 2025-11-26 09:19:10,308 | INFO     | pilot state: finished 
[2025-11-26 04:20:17] 2025-11-26 09:19:10,308 | INFO     | transexitcode: 0
[2025-11-26 04:20:17] 2025-11-26 09:19:10,308 | INFO     | exeerrorcode: 0
[2025-11-26 04:20:17] 2025-11-26 09:19:10,308 | INFO     | exeerrordiag: 
[2025-11-26 04:20:17] 2025-11-26 09:19:10,308 | INFO     | exitcode: 0
[2025-11-26 04:20:17] 2025-11-26 09:19:10,308 | INFO     | exitmsg: OK
[2025-11-26 04:20:17] 2025-11-26 09:19:10,308 | INFO     | cpuconsumptiontime: 257983 s
[2025-11-26 04:20:17] 2025-11-26 09:19:10,308 | INFO     | nevents: 1000
[2025-11-26 04:20:17] 2025-11-26 09:19:10,308 | INFO     | neventsw: 0
[2025-11-26 04:20:17] 2025-11-26 09:19:10,308 | INFO     | pid: 3073633
[2025-11-26 04:20:17] 2025-11-26 09:19:10,308 | INFO     | pgrp: 3073633
[2025-11-26 04:20:17] 2025-11-26 09:19:10,308 | INFO     | corecount: 9
[2025-11-26 04:20:17] 2025-11-26 09:19:10,308 | INFO     | event service: False
[2025-11-26 04:20:17] 2025-11-26 09:19:10,308 | INFO     | sizes: {0: 2284309, 1: 2284309, 9: 2284599, 11: 2284627, 104876: 2358255, 104877: 2358254, 104897: 2367437, 104900: 2367493, 104936: 2367739}
[2025-11-26 04:20:17] 2025-11-26 09:19:10,308 | INFO     | --------------------------------------------------
[2025-11-26 04:20:17] 2025-11-26 09:19:10,309 | INFO     | 
[2025-11-26 04:20:17] 2025-11-26 09:19:10,309 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 04:20:17] 2025-11-26 09:19:10,484 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 04:20:17] 2025-11-26 09:19:10,485 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 04:20:17] 2025-11-26 09:19:10,485 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 04:20:17] 2025-11-26 09:19:10,485 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 04:20:17] 2025-11-26 09:19:10,485 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 04:20:17] 2025-11-26 09:19:10,485 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 04:20:17] 2025-11-26 09:19:10,485 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 04:20:17] 2025-11-26 09:19:10,485 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 04:20:17] 2025-11-26 09:19:10,485 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 04:20:17] 2025-11-26 09:19:10,485 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 04:20:17] 2025-11-26 09:19:10,485 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 04:20:17] 2025-11-26 09:19:10,485 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 04:20:17] 2025-11-26 09:19:10,486 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 04:20:17] 2025-11-26 09:19:10,486 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 04:20:17] 2025-11-26 09:19:10,486 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 04:20:17] 2025-11-26 09:19:10,486 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 04:20:17] 2025-11-26 09:19:10,486 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 04:20:17] 2025-11-26 09:19:10,486 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 04:20:17] 2025-11-26 09:19:10,486 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 04:20:17] 2025-11-26 09:19:10,486 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 04:20:17] 2025-11-26 09:19:10,487 | INFO     | job 6895368132 has completed (purged errors)
[2025-11-26 04:20:17] 2025-11-26 09:19:10,487 | INFO     | overall cleanup function is called
[2025-11-26 04:20:17] 2025-11-26 09:19:11,515 | INFO     | --- collectZombieJob: --- 10, [3073633]
[2025-11-26 04:20:17] 2025-11-26 09:19:11,515 | INFO     | zombie collector waiting for pid 3073633
[2025-11-26 04:20:17] 2025-11-26 09:19:11,515 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 04:20:17] 2025-11-26 09:19:11,515 | INFO     | collected zombie processes
[2025-11-26 04:20:17] 2025-11-26 09:19:11,515 | INFO     | will attempt to kill all subprocesses of pid=3073633
[2025-11-26 04:20:17] 2025-11-26 09:19:14,667 | INFO     | process IDs to be killed: [3073633] (in reverse order)
[2025-11-26 04:20:17] 2025-11-26 09:19:15,089 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 04:20:17] 2025-11-26 09:19:15,089 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 04:20:17] 2025-11-26 09:19:15,113 | INFO     | did not find any defunct processes belonging to 3073633
[2025-11-26 04:20:17] 2025-11-26 09:19:15,136 | INFO     | did not find any defunct processes belonging to 3073633
[2025-11-26 04:20:17] 2025-11-26 09:19:15,137 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 04:20:17] 2025-11-26 09:19:15,138 | INFO     | ready for new job
[2025-11-26 04:20:17] 2025-11-26 09:19:15,138 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 04:20:17] 2025-11-26 09:19:15,144 | INFO     | ***************************************
[2025-11-26 04:20:17] 2025-11-26 09:19:15,144 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 04:20:17] 2025-11-26 09:19:15,144 | INFO     | ***************************************
[2025-11-26 04:20:17] 2025-11-26 09:19:15,144 | INFO     | 
[2025-11-26 04:20:17] 2025-11-26 09:19:15,147 | INFO     | architecture information:
[2025-11-26 04:20:17] 2025-11-26 09:19:15,148 | INFO     | executing command: cat /etc/os-release
[2025-11-26 04:20:17] 2025-11-26 09:19:15,166 | INFO     | cat /etc/os-release:
[2025-11-26 04:20:17] NAME="CentOS Linux"
[2025-11-26 04:20:17] VERSION="7 (Core)"
[2025-11-26 04:20:17] ID="centos"
[2025-11-26 04:20:17] ID_LIKE="rhel fedora"
[2025-11-26 04:20:17] VERSION_ID="7"
[2025-11-26 04:20:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 04:20:17] ANSI_COLOR="0;31"
[2025-11-26 04:20:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 04:20:17] HOME_URL="https://www.centos.org/"
[2025-11-26 04:20:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 04:20:17] 
[2025-11-26 04:20:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 04:20:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 04:20:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 04:20:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 04:20:17] 
[2025-11-26 04:20:17] 2025-11-26 09:19:15,167 | INFO     | ***************************************
[2025-11-26 04:20:17] 2025-11-26 09:19:15,670 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 04:20:17] 2025-11-26 09:19:15,780 | INFO     | sufficient remaining disk space (68669145088 B)
[2025-11-26 04:20:17] 2025-11-26 09:19:15,789 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 04:20:17] 2025-11-26 09:19:15,793 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 04:20:17] 2025-11-26 09:19:15,793 | INFO     | update_server=False
[2025-11-26 04:20:17] 2025-11-26 09:19:15,798 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 04:20:17] 2025-11-26 09:19:15,801 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:20:17] 2025-11-26 09:19:15,803 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 04:20:17] 2025-11-26 09:19:15,803 | INFO     | aborting loop
[2025-11-26 04:20:17] 2025-11-26 09:19:15,980 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 04:20:17] 2025-11-26 09:19:16,327 | INFO     | all data control threads have been joined
[2025-11-26 04:20:17] 2025-11-26 09:19:16,684 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 04:20:17] 2025-11-26 09:19:16,807 | INFO     | [job] retrieve thread has finished
[2025-11-26 04:20:17] 2025-11-26 09:19:16,808 | INFO     | [job] job monitor thread has finished
[2025-11-26 04:20:17] 2025-11-26 09:19:16,808 | INFO     | [job] queue monitor thread has finished
[2025-11-26 04:20:17] 2025-11-26 09:19:16,912 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 04:20:17] 2025-11-26 09:19:16,921 | INFO     | [data] copytool_in thread has finished
[2025-11-26 04:20:17] 2025-11-26 09:19:16,929 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 04:20:17] 2025-11-26 09:19:17,041 | INFO     | all payload control threads have been joined
[2025-11-26 04:20:17] 2025-11-26 09:19:17,142 | INFO     | all job control threads have been joined
[2025-11-26 04:20:17] 2025-11-26 09:19:17,308 | INFO     | [payload] validate_post thread has finished
[2025-11-26 04:20:17] 2025-11-26 09:19:17,335 | INFO     | [data] control thread has finished
[2025-11-26 04:20:17] 2025-11-26 09:19:17,476 | INFO     | [payload] failed_post thread has finished
[2025-11-26 04:20:17] 2025-11-26 09:19:18,047 | INFO     | [payload] control thread has finished
[2025-11-26 04:20:17] 2025-11-26 09:19:18,150 | INFO     | [job] control thread has finished
[2025-11-26 04:20:17] 2025-11-26 09:19:18,234 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 04:20:17] 2025-11-26 09:19:18,267 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 04:20:17] 2025-11-26 09:19:18,273 | INFO     | [job] validate thread has finished
[2025-11-26 04:20:17] 2025-11-26 09:19:18,694 | INFO     | [data] copytool_out thread has finished
[2025-11-26 04:20:17] 2025-11-26 09:19:19,992 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 04:20:17] 2025-11-26 09:19:45,743 | INFO     | PID=3061030 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 04:20:17] 2025-11-26 09:19:45,744 | INFO     | .. there are 20 such processes running
[2025-11-26 04:20:17] 2025-11-26 09:19:45,744 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 04:20:17] 2025-11-26 09:19:45,744 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 04:20:17] 2025-11-26 09:19:45,744 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 04:20:17] 2025-11-26 09:20:09,793 | INFO     | [monitor] cgroup control has ended
[2025-11-26 04:20:17] 2025-11-26 09:20:10,895 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139883579361088)>', '<ExcThread(monitor, started 139882638857984)>']
[2025-11-26 04:20:17] 2025-11-26 09:20:11,091 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 04:20:17] 2025-11-26 09:20:11,091 | INFO     | [monitor] control thread has ended
[2025-11-26 04:20:17] 2025-11-26 09:20:15,921 | INFO     | all workflow threads have been joined
[2025-11-26 04:20:17] 2025-11-26 09:20:15,921 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 04:20:17] 2025-11-26 09:20:15,923 | INFO     | traces error code: 0
[2025-11-26 04:20:17] 2025-11-26 09:20:15,923 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 04:20:17] 2025-11-26 09:20:16,078 [wrapper] ==== pilot stdout END ====
[2025-11-26 04:20:17] 2025-11-26 09:20:16,081 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 04:20:17] 2025-11-26 09:20:16,083 [wrapper] pilotpid: 3061030
[2025-11-26 04:20:17] 2025-11-26 09:20:16,085 [wrapper] Pilot exit status: 0
[2025-11-26 04:20:17] 2025-11-26 09:20:16,166 [wrapper] pandaids: 6895368132
[2025-11-26 04:20:17] 2025-11-26 09:20:16,631 [wrapper] cleanup supervisor_pilot 2310635 3061031
[2025-11-26 04:20:17] 2025-11-26 09:20:16,645 [wrapper] Test setup, not cleaning
[2025-11-26 04:20:17] 2025-11-26 09:20:16,669 [wrapper] apfmon messages muted
[2025-11-26 04:20:17] 2025-11-26 09:20:16,695 [wrapper] ==== wrapper stdout END ====
[2025-11-26 04:20:17] 2025-11-26 09:20:16,709 [wrapper] ==== wrapper stderr END ====
[2025-11-26 04:20:17]  *** Error codes and diagnostics ***
[2025-11-26 04:20:17]     "exeErrorCode": 0,
[2025-11-26 04:20:17]     "exeErrorDiag": "",
[2025-11-26 04:20:17]     "pilotErrorCode": 0,
[2025-11-26 04:20:17]     "pilotErrorDiag": "",
[2025-11-26 04:20:17]  *** Listing of results directory ***
[2025-11-26 04:20:17] total 1315204
[2025-11-26 04:20:17] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 14:15 pilot3.tar.gz
[2025-11-26 04:20:17] -rwx------. 1 boincer umatlas     36292 Nov 23 14:27 runpilot2-wrapper.sh
[2025-11-26 04:20:17] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 14:27 queuedata.json
[2025-11-26 04:20:17] -rw-r--r--. 1 boincer umatlas       100 Nov 24 23:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 04:20:17] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 23:09 run_atlas
[2025-11-26 04:20:17] -rw-r--r--. 1 boincer umatlas       105 Nov 24 23:09 job.xml
[2025-11-26 04:20:17] -rw-r--r--. 2 boincer umatlas 407664356 Nov 24 23:09 EVNT.47483658._000865.pool.root.1
[2025-11-26 04:20:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 23:09 start_atlas.sh
[2025-11-26 04:20:17] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 23:09 shared
[2025-11-26 04:20:17] -rw-r--r--. 2 boincer umatlas    590101 Nov 24 23:09 input.tar.gz
[2025-11-26 04:20:17] -rw-r--r--. 1 boincer umatlas         0 Nov 24 23:09 boinc_lockfile
[2025-11-26 04:20:17] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 23:09 pandaJob.out
[2025-11-26 04:20:17] -rw-------. 1 boincer umatlas        57 Nov 24 23:09 setup.sh.local
[2025-11-26 04:20:17] -rw-------. 1 boincer umatlas    991801 Nov 24 23:09 agis_schedconf.cvmfs.json
[2025-11-26 04:20:17] drwx------. 5 boincer umatlas      4096 Nov 24 23:09 pilot3
[2025-11-26 04:20:17] -rw-r--r--. 1 boincer umatlas       533 Nov 26 03:30 boinc_task_state.xml
[2025-11-26 04:20:17] -rw-------. 1 boincer umatlas 903087754 Nov 26 04:17 HITS.47556137._008515.pool.root.1
[2025-11-26 04:20:17] -rw-------. 1 boincer umatlas      1074 Nov 26 04:18 memory_monitor_summary.json
[2025-11-26 04:20:17] -rw-------. 1 boincer umatlas   1516240 Nov 26 04:18 agis_ddmendpoints.agis.ALL.json
[2025-11-26 04:20:17] -rw-------. 1 boincer umatlas   2775200 Nov 26 04:18 log.47556137._008515.job.log.tgz.1
[2025-11-26 04:20:17] -rw-------. 1 boincer umatlas        95 Nov 26 04:18 pilot_heartbeat.json
[2025-11-26 04:20:17] -rw-------. 1 boincer umatlas      8656 Nov 26 04:19 heartbeat.json
[2025-11-26 04:20:17] -rw-r--r--. 1 boincer umatlas      6844 Nov 26 04:19 init_data.xml
[2025-11-26 04:20:17] -rw-r--r--. 1 boincer umatlas        29 Nov 26 04:20 wrapper_checkpoint.txt
[2025-11-26 04:20:17] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 04:20 boinc_mmap_file
[2025-11-26 04:20:17] -rw-------. 1 boincer umatlas      4824 Nov 26 04:20 pilotlog.txt
[2025-11-26 04:20:17] -rw-------. 1 boincer umatlas  13269347 Nov 26 04:20 log.47556137._008515.job.log.1
[2025-11-26 04:20:17] -rw-------. 1 boincer umatlas       353 Nov 26 04:20 output.list
[2025-11-26 04:20:17] -rw-r--r--. 1 boincer umatlas       620 Nov 26 04:20 runtime_log
[2025-11-26 04:20:17] -rw-------. 1 boincer umatlas  16066560 Nov 26 04:20 result.tar.gz
[2025-11-26 04:20:17] -rw-------. 1 boincer umatlas       669 Nov 26 04:20 YOiLDmRvUh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm98KKDmeLcHEn.diag
[2025-11-26 04:20:17] -rw-r--r--. 1 boincer umatlas      9354 Nov 26 04:20 runtime_log.err
[2025-11-26 04:20:17] -rw-r--r--. 1 boincer umatlas     21780 Nov 26 04:20 stderr.txt
[2025-11-26 04:20:17] HITS file was successfully produced:
[2025-11-26 04:20:17] -rw-------. 1 boincer umatlas 903087754 Nov 26 04:17 shared/HITS.pool.root.1
[2025-11-26 04:20:17]  *** Contents of shared directory: ***
[2025-11-26 04:20:17] total 1296332
[2025-11-26 04:20:17] -rw-r--r--. 2 boincer umatlas 407664356 Nov 24 23:09 ATLAS.root_0
[2025-11-26 04:20:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 23:09 start_atlas.sh
[2025-11-26 04:20:17] -rw-r--r--. 2 boincer umatlas    590101 Nov 24 23:09 input.tar.gz
[2025-11-26 04:20:17] -rw-------. 1 boincer umatlas 903087754 Nov 26 04:17 HITS.pool.root.1
[2025-11-26 04:20:17] -rw-------. 1 boincer umatlas  16066560 Nov 26 04:20 result.tar.gz
04:20:19 (3052558): run_atlas exited; CPU time 259342.638749
04:20:19 (3052558): called boinc_finish(0)

</stderr_txt>
]]>

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