Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:38 (1480291): wrapper (7.7.26015): starting
00:01:38 (1480291): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:01:38] Arguments: --nthreads 9
[2025-11-24 00:01:38] Threads: 9
[2025-11-24 00:01:38] Checking for CVMFS
[2025-11-24 00:01:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:01:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:01:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:01:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:01:41] 2.13.3.0 13693 26721 339936 153233 3 97 32037613 40960000 23554 16776704 0 73660959 99.608 75711393 36193 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:01:41] CVMFS is ok
[2025-11-24 00:01:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:01:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:01:41] Further information can be found at the LHC@home message board.
[2025-11-24 00:01:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:01:41] Checking for apptainer binary...
[2025-11-24 00:01:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:01:41] Running /usr/bin/apptainer --version
[2025-11-24 00:01:41] apptainer version 1.4.4-1.el9
[2025-11-24 00:01:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:01:42] c6-5-37-3.aglt2.org
[2025-11-24 00:01:42] apptainer works
[2025-11-24 00:01:42] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:01:42] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:01:42] Starting ATLAS job with PandaID=6895338743
[2025-11-24 00:01:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 02:53:11]  *** The last 200 lines of the pilot log: ***
[2025-11-25 02:53:11] 2025-11-25 06:03:19,057 | INFO     | time since job start (90033s) is within the limit (172800.0s)
[2025-11-25 02:53:11] 2025-11-25 06:03:19,057 | INFO     | 90038s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 02:53:11] 2025-11-25 06:03:21,064 | INFO     | time since job start (90035s) is within the limit (172800.0s)
[2025-11-25 02:53:11] 2025-11-25 06:03:21,205 | INFO     | monitor loop #5445: job 0:6895338743 is in state 'finished'
[2025-11-25 02:53:11] 2025-11-25 06:03:21,205 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:53:11] 2025-11-25 06:03:22,922 | INFO     | PID=1490482 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 02:53:11] 2025-11-25 06:03:22,922 | INFO     | .. there are 32 such processes running
[2025-11-25 02:53:11] 2025-11-25 06:03:23,712 | INFO     | monitor loop #5446: job 0:6895338743 is in state 'finished'
[2025-11-25 02:53:11] 2025-11-25 06:03:23,712 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:53:11] 2025-11-25 06:03:23,950 | INFO     | time since job start (90037s) is within the limit (172800.0s)
[2025-11-25 02:53:11] 2025-11-25 06:03:25,961 | INFO     | time since job start (90039s) is within the limit (172800.0s)
[2025-11-25 02:53:11] 2025-11-25 06:03:26,218 | INFO     | monitor loop #5447: job 0:6895338743 is in state 'finished'
[2025-11-25 02:53:11] 2025-11-25 06:03:26,218 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:53:11] 2025-11-25 06:03:27,980 | INFO     | time since job start (90041s) is within the limit (172800.0s)
[2025-11-25 02:53:11] 2025-11-25 06:03:28,739 | INFO     | monitor loop #5448: job 0:6895338743 is in state 'finished'
[2025-11-25 02:53:11] 2025-11-25 06:03:28,739 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 02:53:11] 2025-11-25 06:03:29,987 | INFO     | time since job start (90043s) is within the limit (172800.0s)
[2025-11-25 02:53:11] 2025-11-25 06:03:30,371 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 02:53:11] 2025-11-25 06:03:30,383 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2877.107410714286
[2025-11-25 02:53:11] 2025-11-25 06:03:30,400 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895338743/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 02:53:11] 2025-11-25 06:03:30,400 | INFO     | extracted standard info from prmon json
[2025-11-25 02:53:11] 2025-11-25 06:03:30,400 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 02:53:11] 2025-11-25 06:03:30,401 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 02:53:11] 2025-11-25 06:03:30,440 | INFO     | fitting pss+swap vs Time
[2025-11-25 02:53:11] 2025-11-25 06:03:30,442 | INFO     | sum of square deviations: 992995943494.5945
[2025-11-25 02:53:11] 2025-11-25 06:03:30,513 | INFO     | sum of deviations: 4833955674166.75
[2025-11-25 02:53:11] 2025-11-25 06:03:30,513 | INFO     | mean x: 1764005630.2822251
[2025-11-25 02:53:11] 2025-11-25 06:03:30,513 | INFO     | mean y: 3035935.647218453
[2025-11-25 02:53:11] 2025-11-25 06:03:30,513 | INFO     | intersect: -8584234819.715413
[2025-11-25 02:53:11] 2025-11-25 06:03:30,515 | INFO     | chi2: 19.312347933097765
[2025-11-25 02:53:11] 2025-11-25 06:03:30,522 | INFO     | sum of square deviations: 982925327971.1586
[2025-11-25 02:53:11] 2025-11-25 06:03:30,584 | INFO     | sum of deviations: 5367483380715.212
[2025-11-25 02:53:11] 2025-11-25 06:03:30,584 | INFO     | mean x: 1764005477.7882915
[2025-11-25 02:53:11] 2025-11-25 06:03:30,584 | INFO     | mean y: 3044014.0939414566
[2025-11-25 02:53:11] 2025-11-25 06:03:30,584 | INFO     | intersect: -9629702051.22779
[2025-11-25 02:53:11] 2025-11-25 06:03:30,586 | INFO     | chi2: 15.871341413367233
[2025-11-25 02:53:11] 2025-11-25 06:03:30,586 | INFO     | current chi2=15.871341413367233 (change=17.81764978370801 %)
[2025-11-25 02:53:11] 2025-11-25 06:03:30,586 | INFO     | right removable region: 1468
[2025-11-25 02:53:11] 2025-11-25 06:03:30,591 | INFO     | sum of square deviations: 982923725501.1584
[2025-11-25 02:53:11] 2025-11-25 06:03:30,660 | INFO     | sum of deviations: 4222547661298.614
[2025-11-25 02:53:11] 2025-11-25 06:03:30,661 | INFO     | mean x: 1764005782.7882915
[2025-11-25 02:53:11] 2025-11-25 06:03:30,661 | INFO     | mean y: 3045192.255956433
[2025-11-25 02:53:11] 2025-11-25 06:03:30,661 | INFO     | intersect: -7574957351.972132
[2025-11-25 02:53:11] 2025-11-25 06:03:30,666 | INFO     | chi2: 15.42599737608225
[2025-11-25 02:53:11] 2025-11-25 06:03:30,667 | INFO     | current chi2=15.42599737608225 (change=20.123656483813832 %)
[2025-11-25 02:53:11] 2025-11-25 06:03:30,667 | INFO     | left removable region: 10
[2025-11-25 02:53:11] 2025-11-25 06:03:30,668 | INFO     | sum of square deviations: 961007040988.8193
[2025-11-25 02:53:11] 2025-11-25 06:03:30,736 | INFO     | sum of deviations: 4524920413462.104
[2025-11-25 02:53:11] 2025-11-25 06:03:30,737 | INFO     | mean x: 1764005752.3010974
[2025-11-25 02:53:11] 2025-11-25 06:03:30,737 | INFO     | mean y: 3060891.619341564
[2025-11-25 02:53:11] 2025-11-25 06:03:30,737 | INFO     | intersect: -8302794630.353547
[2025-11-25 02:53:11] 2025-11-25 06:03:30,742 | INFO     | chi2: 9.670241504422542
[2025-11-25 02:53:11] 2025-11-25 06:03:30,743 | INFO     | current memory leak: 4.71 B/s (using 1458 data points, chi2=9.67)
[2025-11-25 02:53:11] 2025-11-25 06:03:30,744 | INFO     | could have reported an average CPU frequency of 3125 MHz (52 samples)
[2025-11-25 02:53:11] 2025-11-25 06:03:30,745 | INFO     | ..............................
[2025-11-25 02:53:11] 2025-11-25 06:03:30,745 | INFO     | . Timing measurements:
[2025-11-25 02:53:11] 2025-11-25 06:03:30,745 | INFO     | . get job = 0 s
[2025-11-25 02:53:11] 2025-11-25 06:03:30,745 | INFO     | . initial setup = 5 s
[2025-11-25 02:53:11] 2025-11-25 06:03:30,745 | INFO     | . payload setup = 38 s
[2025-11-25 02:53:11] 2025-11-25 06:03:30,745 | INFO     | . stage-in = 0 s
[2025-11-25 02:53:11] 2025-11-25 06:03:30,745 | INFO     | . payload execution = 89891 s
[2025-11-25 02:53:11] 2025-11-25 06:03:30,745 | INFO     | . stage-out = 6 s
[2025-11-25 02:53:11] 2025-11-25 06:03:30,745 | INFO     | . log creation = 1 s
[2025-11-25 02:53:11] 2025-11-25 06:03:30,745 | INFO     | ..............................
[2025-11-25 02:53:11] 2025-11-25 06:03:30,932 | INFO     | 
[2025-11-25 02:53:11] 2025-11-25 06:03:30,933 | INFO     | job summary report
[2025-11-25 02:53:11] 2025-11-25 06:03:30,933 | INFO     | --------------------------------------------------
[2025-11-25 02:53:11] 2025-11-25 06:03:30,933 | INFO     | PanDA job id: 6895338743
[2025-11-25 02:53:11] 2025-11-25 06:03:30,933 | INFO     | task id: 47556137
[2025-11-25 02:53:11] 2025-11-25 06:03:30,933 | INFO     | errors: (none)
[2025-11-25 02:53:11] 2025-11-25 06:03:30,933 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 02:53:11] 2025-11-25 06:03:30,933 | INFO     | pilot state: finished 
[2025-11-25 02:53:11] 2025-11-25 06:03:30,933 | INFO     | transexitcode: 0
[2025-11-25 02:53:11] 2025-11-25 06:03:30,933 | INFO     | exeerrorcode: 0
[2025-11-25 02:53:11] 2025-11-25 06:03:30,933 | INFO     | exeerrordiag: 
[2025-11-25 02:53:11] 2025-11-25 06:03:30,933 | INFO     | exitcode: 0
[2025-11-25 02:53:11] 2025-11-25 06:03:30,934 | INFO     | exitmsg: OK
[2025-11-25 02:53:11] 2025-11-25 06:03:30,934 | INFO     | cpuconsumptiontime: 230009 s
[2025-11-25 02:53:11] 2025-11-25 06:03:30,934 | INFO     | nevents: 1000
[2025-11-25 02:53:11] 2025-11-25 06:03:30,934 | INFO     | neventsw: 0
[2025-11-25 02:53:11] 2025-11-25 06:03:30,934 | INFO     | pid: 1515187
[2025-11-25 02:53:11] 2025-11-25 06:03:30,934 | INFO     | pgrp: 1515187
[2025-11-25 02:53:11] 2025-11-25 06:03:30,934 | INFO     | corecount: 9
[2025-11-25 02:53:11] 2025-11-25 06:03:30,934 | INFO     | event service: False
[2025-11-25 02:53:11] 2025-11-25 06:03:30,934 | INFO     | sizes: {0: 2297928, 1: 2298529, 2: 2298613, 3: 2298669, 4: 2298840, 5: 2298868, 16: 2299052, 27: 2299080, 37: 2299370, 39: 2299398, 89931: 2366976, 89939: 2376761,
[2025-11-25 02:53:11] 2025-11-25 06:03:30,934 | INFO     | --------------------------------------------------
[2025-11-25 02:53:11] 2025-11-25 06:03:30,934 | INFO     | 
[2025-11-25 02:53:11] 2025-11-25 06:03:30,934 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-25 02:53:11] 2025-11-25 06:03:30,988 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 02:53:11] 2025-11-25 06:03:30,988 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 02:53:11] 2025-11-25 06:03:30,988 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 02:53:11] 2025-11-25 06:03:30,988 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 02:53:11] 2025-11-25 06:03:30,988 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 02:53:11] 2025-11-25 06:03:30,988 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 02:53:11] 2025-11-25 06:03:30,989 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 02:53:11] 2025-11-25 06:03:30,989 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 02:53:11] 2025-11-25 06:03:30,989 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 02:53:11] 2025-11-25 06:03:30,989 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 02:53:11] 2025-11-25 06:03:30,989 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 02:53:11] 2025-11-25 06:03:30,989 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 02:53:11] 2025-11-25 06:03:30,989 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 02:53:11] 2025-11-25 06:03:30,989 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 02:53:11] 2025-11-25 06:03:30,989 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 02:53:11] 2025-11-25 06:03:30,989 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 02:53:11] 2025-11-25 06:03:30,989 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 02:53:11] 2025-11-25 06:03:30,989 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 02:53:11] 2025-11-25 06:03:30,989 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 02:53:11] 2025-11-25 06:03:30,990 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 02:53:11] 2025-11-25 06:03:30,990 | INFO     | job 6895338743 has completed (purged errors)
[2025-11-25 02:53:11] 2025-11-25 06:03:30,990 | INFO     | overall cleanup function is called
[2025-11-25 02:53:11] 2025-11-25 06:03:32,017 | INFO     | --- collectZombieJob: --- 10, [1515187]
[2025-11-25 02:53:11] 2025-11-25 06:03:32,017 | INFO     | zombie collector waiting for pid 1515187
[2025-11-25 02:53:11] 2025-11-25 06:03:32,017 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 02:53:11] 2025-11-25 06:03:32,018 | INFO     | collected zombie processes
[2025-11-25 02:53:11] 2025-11-25 06:03:32,018 | INFO     | will attempt to kill all subprocesses of pid=1515187
[2025-11-25 02:53:11] 2025-11-25 06:03:33,115 | INFO     | process IDs to be killed: [1515187] (in reverse order)
[2025-11-25 02:53:11] 2025-11-25 06:03:33,505 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 02:53:11] 2025-11-25 06:03:33,519 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 02:53:11] 2025-11-25 06:03:33,576 | INFO     | did not find any defunct processes belonging to 1515187
[2025-11-25 02:53:11] 2025-11-25 06:03:33,627 | INFO     | did not find any defunct processes belonging to 1515187
[2025-11-25 02:53:11] 2025-11-25 06:03:33,628 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 02:53:11] 2025-11-25 06:03:33,628 | INFO     | ready for new job
[2025-11-25 02:53:11] 2025-11-25 06:03:33,628 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 02:53:11] 2025-11-25 06:03:33,635 | INFO     | ***************************************
[2025-11-25 02:53:11] 2025-11-25 06:03:33,635 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 02:53:11] 2025-11-25 06:03:33,635 | INFO     | ***************************************
[2025-11-25 02:53:11] 2025-11-25 06:03:33,635 | INFO     | 
[2025-11-25 02:53:11] 2025-11-25 06:03:33,638 | INFO     | architecture information:
[2025-11-25 02:53:11] 2025-11-25 06:03:33,639 | INFO     | executing command: cat /etc/os-release
[2025-11-25 02:53:11] 2025-11-25 06:03:33,729 | INFO     | cat /etc/os-release:
[2025-11-25 02:53:11] NAME="CentOS Linux"
[2025-11-25 02:53:11] VERSION="7 (Core)"
[2025-11-25 02:53:11] ID="centos"
[2025-11-25 02:53:11] ID_LIKE="rhel fedora"
[2025-11-25 02:53:11] VERSION_ID="7"
[2025-11-25 02:53:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 02:53:11] ANSI_COLOR="0;31"
[2025-11-25 02:53:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 02:53:11] HOME_URL="https://www.centos.org/"
[2025-11-25 02:53:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 02:53:11] 
[2025-11-25 02:53:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 02:53:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 02:53:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 02:53:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 02:53:11] 
[2025-11-25 02:53:11] 2025-11-25 06:03:33,730 | INFO     | ***************************************
[2025-11-25 02:53:11] 2025-11-25 06:03:34,233 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-25 02:53:11] 2025-11-25 06:03:34,400 | INFO     | sufficient remaining disk space (68122836992 B)
[2025-11-25 02:53:11] 2025-11-25 06:03:34,400 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 02:53:11] 2025-11-25 06:03:34,400 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 02:53:11] 2025-11-25 06:03:34,400 | INFO     | update_server=False
[2025-11-25 02:53:11] 2025-11-25 06:03:34,400 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 02:53:11] 2025-11-25 06:03:34,401 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 02:53:11] 2025-11-25 06:03:34,826 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:53:11] 2025-11-25 06:03:34,826 | INFO     | aborting loop
[2025-11-25 02:53:11] 2025-11-25 06:03:34,988 | INFO     | all data control threads have been joined
[2025-11-25 02:53:11] 2025-11-25 06:03:35,379 | INFO     | all job control threads have been joined
[2025-11-25 02:53:11] 2025-11-25 06:03:35,408 | INFO     | [job] retrieve thread has finished
[2025-11-25 02:53:11] 2025-11-25 06:03:35,556 | INFO     | all payload control threads have been joined
[2025-11-25 02:53:11] 2025-11-25 06:03:35,832 | INFO     | [job] job monitor thread has finished
[2025-11-25 02:53:11] 2025-11-25 06:03:35,978 | INFO     | [data] copytool_in thread has finished
[2025-11-25 02:53:11] 2025-11-25 06:03:35,994 | INFO     | [data] control thread has finished
[2025-11-25 02:53:11] 2025-11-25 06:03:36,003 | INFO     | [payload] failed_post thread has finished
[2025-11-25 02:53:11] 2025-11-25 06:03:36,016 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:53:11] 2025-11-25 06:03:36,385 | INFO     | [job] control thread has finished
[2025-11-25 02:53:11] 2025-11-25 06:03:36,413 | INFO     | [data] copytool_out thread has finished
[2025-11-25 02:53:11] 2025-11-25 06:03:36,444 | INFO     | [job] validate thread has finished
[2025-11-25 02:53:11] 2025-11-25 06:03:36,464 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 02:53:11] 2025-11-25 06:03:36,471 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 02:53:11] 2025-11-25 06:03:36,562 | INFO     | [payload] control thread has finished
[2025-11-25 02:53:11] 2025-11-25 06:03:36,593 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 02:53:11] 2025-11-25 06:03:36,816 | INFO     | [payload] validate_post thread has finished
[2025-11-25 02:53:11] 2025-11-25 06:03:36,863 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 02:53:11] 2025-11-25 06:03:37,022 | INFO     | [job] queue monitor thread has finished
[2025-11-25 02:53:11] 2025-11-25 06:03:37,592 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 02:53:11] 2025-11-25 06:03:41,623 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 02:53:11] 2025-11-25 06:04:04,590 | INFO     | PID=1490482 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 02:53:11] 2025-11-25 06:04:04,590 | INFO     | .. there are 32 such processes running
[2025-11-25 02:53:11] 2025-11-25 06:04:04,592 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 02:53:11] 2025-11-25 06:04:04,592 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 02:53:11] 2025-11-25 06:04:04,592 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 02:53:11] 2025-11-25 06:04:27,890 | INFO     | [monitor] cgroup control has ended
[2025-11-25 02:53:11] 2025-11-25 06:04:28,412 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140478797883200)>', '<ExcThread(monitor, started 140478020306688)>']
[2025-11-25 02:53:11] 2025-11-25 06:04:28,782 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 02:53:11] 2025-11-25 06:04:28,782 | INFO     | [monitor] control thread has ended
[2025-11-25 02:53:11] 2025-11-25 06:04:33,438 | INFO     | all workflow threads have been joined
[2025-11-25 02:53:11] 2025-11-25 06:04:33,438 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 02:53:11] 2025-11-25 06:04:33,439 | INFO     | traces error code: 0
[2025-11-25 02:53:11] 2025-11-25 06:04:33,439 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 02:53:11] 2025-11-25 06:04:33,782 [wrapper] ==== pilot stdout END ====
[2025-11-25 02:53:11] 2025-11-25 06:04:33,821 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 02:53:11] 2025-11-25 06:04:33,860 [wrapper] pilotpid: 1490482
[2025-11-25 02:53:11] 2025-11-25 06:04:33,886 [wrapper] Pilot exit status: 0
[2025-11-25 02:53:11] 2025-11-25 06:04:33,989 [wrapper] pandaids: 6895338743
[2025-11-25 02:53:11] 2025-11-25 06:04:34,083 [wrapper] cleanup supervisor_pilot 1559682 1490483
[2025-11-25 02:53:11] 2025-11-25 06:04:34,102 [wrapper] Test setup, not cleaning
[2025-11-25 02:53:11] 2025-11-25 06:04:34,106 [wrapper] apfmon messages muted
[2025-11-25 02:53:11] 2025-11-25 06:04:34,153 [wrapper] ==== wrapper stdout END ====
[2025-11-25 02:53:11] 2025-11-25 06:04:34,169 [wrapper] ==== wrapper stderr END ====
[2025-11-25 02:53:11]  *** Error codes and diagnostics ***
[2025-11-25 02:53:11]     "exeErrorCode": 0,
[2025-11-25 02:53:11]     "exeErrorDiag": "",
[2025-11-25 02:53:11]     "pilotErrorCode": 0,
[2025-11-25 02:53:11]     "pilotErrorDiag": "",
[2025-11-25 02:53:11]  *** Listing of results directory ***
[2025-11-25 02:53:11] total 1312440
[2025-11-25 02:53:11] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 04:55 pilot3.tar.gz
[2025-11-25 02:53:11] -rwx------. 1 boincer umatlas     36292 Nov 22 05:03 runpilot2-wrapper.sh
[2025-11-25 02:53:11] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 05:03 queuedata.json
[2025-11-25 02:53:11] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 02:53:11] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:01 run_atlas
[2025-11-25 02:53:11] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:01 job.xml
[2025-11-25 02:53:11] -rw-r--r--. 2 boincer umatlas 406210646 Nov 24 00:01 EVNT.47483658._000341.pool.root.1
[2025-11-25 02:53:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:01 start_atlas.sh
[2025-11-25 02:53:11] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:01 shared
[2025-11-25 02:53:11] -rw-r--r--. 2 boincer umatlas    590098 Nov 24 00:01 input.tar.gz
[2025-11-25 02:53:11] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:01 boinc_lockfile
[2025-11-25 02:53:11] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 00:01 pandaJob.out
[2025-11-25 02:53:11] -rw-------. 1 boincer umatlas        57 Nov 24 00:01 setup.sh.local
[2025-11-25 02:53:11] -rw-------. 1 boincer umatlas    989786 Nov 24 00:02 agis_schedconf.cvmfs.json
[2025-11-25 02:53:11] drwx------. 5 boincer umatlas      4096 Nov 24 00:02 pilot3
[2025-11-25 02:53:11] -rw-r--r--. 1 boincer umatlas       533 Nov 25 00:14 boinc_task_state.xml
[2025-11-25 02:53:11] -rw-------. 1 boincer umatlas 905690664 Nov 25 01:02 HITS.47556137._003379.pool.root.1
[2025-11-25 02:53:11] -rw-------. 1 boincer umatlas      1063 Nov 25 01:02 memory_monitor_summary.json
[2025-11-25 02:53:11] -rw-------. 1 boincer umatlas   1516227 Nov 25 01:02 agis_ddmendpoints.agis.ALL.json
[2025-11-25 02:53:11] -rw-------. 1 boincer umatlas   2618921 Nov 25 01:02 log.47556137._003379.job.log.tgz.1
[2025-11-25 02:53:11] -rw-------. 1 boincer umatlas      8625 Nov 25 01:03 heartbeat.json
[2025-11-25 02:53:11] -rw-------. 1 boincer umatlas        95 Nov 25 01:04 pilot_heartbeat.json
[2025-11-25 02:53:11] -rw-------. 1 boincer umatlas      4824 Nov 25 01:04 pilotlog.txt
[2025-11-25 02:53:11] -rw-------. 1 boincer umatlas  11439957 Nov 25 01:04 log.47556137._003379.job.log.1
[2025-11-25 02:53:11] -rw-------. 1 boincer umatlas       353 Nov 25 01:04 output.list
[2025-11-25 02:53:11] -rw-r--r--. 1 boincer umatlas       620 Nov 25 01:04 runtime_log
[2025-11-25 02:53:11] -rw-------. 1 boincer umatlas  14080000 Nov 25 01:04 result.tar.gz
[2025-11-25 02:53:11] -rw-r--r--. 1 boincer umatlas      9348 Nov 25 01:04 runtime_log.err
[2025-11-25 02:53:11] -rw-------. 1 boincer umatlas       661 Nov 25 01:04 6HyKDmQezg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmj6JKDmBloIEo.diag
[2025-11-25 02:53:11] -rw-r--r--. 1 boincer umatlas      6845 Nov 25 02:45 init_data.xml
[2025-11-25 02:53:11] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 02:53 boinc_mmap_file
[2025-11-25 02:53:11] -rw-r--r--. 1 boincer umatlas     21889 Nov 25 02:53 stderr.txt
[2025-11-25 02:53:11] -rw-r--r--. 1 boincer umatlas        29 Nov 25 02:53 wrapper_checkpoint.txt
[2025-11-25 02:53:11] HITS file was successfully produced:
[2025-11-25 02:53:11] -rw-------. 1 boincer umatlas 905690664 Nov 25 01:02 shared/HITS.pool.root.1
[2025-11-25 02:53:11]  *** Contents of shared directory: ***
[2025-11-25 02:53:11] total 1295512
[2025-11-25 02:53:11] -rw-r--r--. 2 boincer umatlas 406210646 Nov 24 00:01 ATLAS.root_0
[2025-11-25 02:53:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:01 start_atlas.sh
[2025-11-25 02:53:11] -rw-r--r--. 2 boincer umatlas    590098 Nov 24 00:01 input.tar.gz
[2025-11-25 02:53:11] -rw-------. 1 boincer umatlas 905690664 Nov 25 01:02 HITS.pool.root.1
[2025-11-25 02:53:11] -rw-------. 1 boincer umatlas  14080000 Nov 25 01:04 result.tar.gz
02:53:33 (1480291): run_atlas exited; CPU time 231558.795952
02:53:33 (1480291): called boinc_finish(0)

</stderr_txt>
]]>

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