Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:31 (669755): wrapper (7.7.26015): starting
00:03:31 (669755): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:03:31] Arguments: --nthreads 9
[2025-11-24 00:03:31] Threads: 9
[2025-11-24 00:03:31] Checking for CVMFS
[2025-11-24 00:03:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:03:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:03:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:03:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:03:34] 2.13.3.0 11541 26724 377248 153233 1 607 29198069 32935936 19100 16776704 0 55762283 99.295 100126646 40545 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:03:34] CVMFS is ok
[2025-11-24 00:03:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:03:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:03:34] Further information can be found at the LHC@home message board.
[2025-11-24 00:03:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:03:34] Checking for apptainer binary...
[2025-11-24 00:03:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:03:34] Running /usr/bin/apptainer --version
[2025-11-24 00:03:35] apptainer version 1.4.4-1.el9
[2025-11-24 00:03:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:03:35] c6-1-26-1.aglt2.org
[2025-11-24 00:03:35] apptainer works
[2025-11-24 00:03:35] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:03:35] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:03:35] Starting ATLAS job with PandaID=6895350385
[2025-11-24 00:03:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 23:37:47]  *** The last 200 lines of the pilot log: ***
[2025-11-24 23:37:48] 2025-11-25 04:37:13,012 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2762.496732142857
[2025-11-24 23:37:48] 2025-11-25 04:37:13,034 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895350385/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 23:37:48] 2025-11-25 04:37:13,034 | INFO     | extracted standard info from prmon json
[2025-11-24 23:37:48] 2025-11-25 04:37:13,035 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 23:37:48] 2025-11-25 04:37:13,035 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 23:37:48] 2025-11-25 04:37:13,081 | INFO     | fitting pss+swap vs Time
[2025-11-24 23:37:48] 2025-11-25 04:37:13,083 | INFO     | sum of square deviations: 825447128517.974
[2025-11-24 23:37:48] 2025-11-25 04:37:13,105 | INFO     | monitor loop #5097: job 0:6895350385 is in state 'finished'
[2025-11-24 23:37:48] 2025-11-25 04:37:13,106 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 23:37:48] 2025-11-25 04:37:13,154 | INFO     | sum of deviations: 6721008995797.821
[2025-11-24 23:37:48] 2025-11-25 04:37:13,155 | INFO     | mean x: 1764003100.147186
[2025-11-24 23:37:48] 2025-11-25 04:37:13,155 | INFO     | mean y: 3050139.9812409813
[2025-11-24 23:37:48] 2025-11-25 04:37:13,155 | INFO     | intersect: -14359929989.334602
[2025-11-24 23:37:48] 2025-11-25 04:37:13,157 | INFO     | chi2: 15.1503863066474
[2025-11-24 23:37:48] 2025-11-25 04:37:13,163 | INFO     | sum of square deviations: 816545833533.7233
[2025-11-24 23:37:48] 2025-11-25 04:37:13,229 | INFO     | sum of deviations: 7235513647336.758
[2025-11-24 23:37:48] 2025-11-25 04:37:13,229 | INFO     | mean x: 1764002947.660391
[2025-11-24 23:37:48] 2025-11-25 04:37:13,229 | INFO     | mean y: 3058953.434467777
[2025-11-24 23:37:48] 2025-11-25 04:37:13,229 | INFO     | intersect: -15627989393.84964
[2025-11-24 23:37:48] 2025-11-25 04:37:13,231 | INFO     | chi2: 11.701741393466294
[2025-11-24 23:37:48] 2025-11-25 04:37:13,231 | INFO     | current chi2=11.701741393466294 (change=22.762752337661347 %)
[2025-11-24 23:37:48] 2025-11-25 04:37:13,231 | INFO     | right removable region: 1380
[2025-11-24 23:37:48] 2025-11-25 04:37:13,233 | INFO     | sum of square deviations: 816542749983.7227
[2025-11-24 23:37:48] 2025-11-25 04:37:13,299 | INFO     | sum of deviations: 6111337479954.411
[2025-11-24 23:37:48] 2025-11-25 04:37:13,300 | INFO     | mean x: 1764003252.660391
[2025-11-24 23:37:48] 2025-11-25 04:37:13,300 | INFO     | mean y: 3060581.393193338
[2025-11-24 23:37:48] 2025-11-25 04:37:13,300 | INFO     | intersect: -13199455995.919922
[2025-11-24 23:37:48] 2025-11-25 04:37:13,308 | INFO     | chi2: 10.700750725737572
[2025-11-24 23:37:48] 2025-11-25 04:37:13,308 | INFO     | current chi2=10.700750725737572 (change=29.36978299330559 %)
[2025-11-24 23:37:48] 2025-11-25 04:37:13,309 | INFO     | sum of square deviations: 807702605211.4878
[2025-11-24 23:37:48] 2025-11-25 04:37:13,362 | INFO     | sum of deviations: 5595670049395.15
[2025-11-24 23:37:48] 2025-11-25 04:37:13,363 | INFO     | mean x: 1764003405.1736917
[2025-11-24 23:37:48] 2025-11-25 04:37:13,363 | INFO     | mean y: 3069477.2252906975
[2025-11-24 23:37:48] 2025-11-25 04:37:13,363 | INFO     | intersect: -12217741694.699718
[2025-11-24 23:37:48] 2025-11-25 04:37:13,364 | INFO     | chi2: 7.67834752908096
[2025-11-24 23:37:48] 2025-11-25 04:37:13,364 | INFO     | current chi2=7.67834752908096 (change=28.244777157429642 %)
[2025-11-24 23:37:48] 2025-11-25 04:37:13,366 | INFO     | sum of square deviations: 798927048371.3365
[2025-11-24 23:37:48] 2025-11-25 04:37:13,397 | INFO     | sum of deviations: 5350069761061.235
[2025-11-24 23:37:48] 2025-11-25 04:37:13,397 | INFO     | mean x: 1764003557.681984
[2025-11-24 23:37:48] 2025-11-25 04:37:13,397 | INFO     | mean y: 3073741.734500365
[2025-11-24 23:37:48] 2025-11-25 04:37:13,397 | INFO     | intersect: -11809697038.273321
[2025-11-24 23:37:48] 2025-11-25 04:37:13,399 | INFO     | chi2: 6.997541220804733
[2025-11-24 23:37:48] 2025-11-25 04:37:13,399 | INFO     | current chi2=6.997541220804733 (change=8.866573252874302 %)
[2025-11-24 23:37:48] 2025-11-25 04:37:13,399 | INFO     | left removable region: 30
[2025-11-24 23:37:48] 2025-11-25 04:37:13,401 | INFO     | sum of square deviations: 762768086832.5104
[2025-11-24 23:37:48] 2025-11-25 04:37:13,431 | INFO     | sum of deviations: 5628444132054.747
[2025-11-24 23:37:48] 2025-11-25 04:37:13,432 | INFO     | mean x: 1764003832.2081482
[2025-11-24 23:37:48] 2025-11-25 04:37:13,432 | INFO     | mean y: 3091068.6414814815
[2025-11-24 23:37:48] 2025-11-25 04:37:13,432 | INFO     | intersect: -13013443300.990808
[2025-11-24 23:37:48] 2025-11-25 04:37:13,433 | INFO     | chi2: 2.4900396105113405
[2025-11-24 23:37:48] 2025-11-25 04:37:13,434 | INFO     | current memory leak: 7.38 B/s (using 1350 data points, chi2=2.49)
[2025-11-24 23:37:48] 2025-11-25 04:37:13,435 | INFO     | could have reported an average CPU frequency of 2839 MHz (50 samples)
[2025-11-24 23:37:48] 2025-11-25 04:37:13,435 | INFO     | ..............................
[2025-11-24 23:37:48] 2025-11-25 04:37:13,435 | INFO     | . Timing measurements:
[2025-11-24 23:37:48] 2025-11-25 04:37:13,436 | INFO     | . get job = 0 s
[2025-11-24 23:37:48] 2025-11-25 04:37:13,436 | INFO     | . initial setup = 3 s
[2025-11-24 23:37:48] 2025-11-25 04:37:13,436 | INFO     | . payload setup = 54 s
[2025-11-24 23:37:48] 2025-11-25 04:37:13,436 | INFO     | . stage-in = 0 s
[2025-11-24 23:37:48] 2025-11-25 04:37:13,436 | INFO     | . payload execution = 84572 s
[2025-11-24 23:37:48] 2025-11-25 04:37:13,436 | INFO     | . stage-out = 9 s
[2025-11-24 23:37:48] 2025-11-25 04:37:13,436 | INFO     | . log creation = 2 s
[2025-11-24 23:37:48] 2025-11-25 04:37:13,436 | INFO     | ..............................
[2025-11-24 23:37:48] 2025-11-25 04:37:14,039 | INFO     | 
[2025-11-24 23:37:48] 2025-11-25 04:37:14,040 | INFO     | job summary report
[2025-11-24 23:37:48] 2025-11-25 04:37:14,040 | INFO     | --------------------------------------------------
[2025-11-24 23:37:48] 2025-11-25 04:37:14,040 | INFO     | PanDA job id: 6895350385
[2025-11-24 23:37:48] 2025-11-25 04:37:14,040 | INFO     | task id: 47556137
[2025-11-24 23:37:48] 2025-11-25 04:37:14,040 | INFO     | errors: (none)
[2025-11-24 23:37:48] 2025-11-25 04:37:14,040 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 23:37:48] 2025-11-25 04:37:14,040 | INFO     | pilot state: finished 
[2025-11-24 23:37:48] 2025-11-25 04:37:14,040 | INFO     | transexitcode: 0
[2025-11-24 23:37:48] 2025-11-25 04:37:14,040 | INFO     | exeerrorcode: 0
[2025-11-24 23:37:48] 2025-11-25 04:37:14,040 | INFO     | exeerrordiag: 
[2025-11-24 23:37:48] 2025-11-25 04:37:14,040 | INFO     | exitcode: 0
[2025-11-24 23:37:48] 2025-11-25 04:37:14,040 | INFO     | exitmsg: OK
[2025-11-24 23:37:48] 2025-11-25 04:37:14,040 | INFO     | cpuconsumptiontime: 246435 s
[2025-11-24 23:37:48] 2025-11-25 04:37:14,040 | INFO     | nevents: 1000
[2025-11-24 23:37:48] 2025-11-25 04:37:14,041 | INFO     | neventsw: 0
[2025-11-24 23:37:48] 2025-11-25 04:37:14,041 | INFO     | pid: 693299
[2025-11-24 23:37:48] 2025-11-25 04:37:14,041 | INFO     | pgrp: 693299
[2025-11-24 23:37:48] 2025-11-25 04:37:14,041 | INFO     | corecount: 9
[2025-11-24 23:37:48] 2025-11-25 04:37:14,041 | INFO     | event service: False
[2025-11-24 23:37:48] 2025-11-25 04:37:14,041 | INFO     | sizes: {0: 2297928, 1: 2298613, 2: 2298812, 13: 2298812, 25: 2298868, 35: 2298896, 39: 2299314, 46: 2299342, 84630: 2363535, 84641: 2373376, 84669: 2373566}
[2025-11-24 23:37:48] 2025-11-25 04:37:14,041 | INFO     | --------------------------------------------------
[2025-11-24 23:37:48] 2025-11-25 04:37:14,041 | INFO     | 
[2025-11-24 23:37:48] 2025-11-25 04:37:14,041 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-24 23:37:48] 2025-11-25 04:37:14,136 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 23:37:48] 2025-11-25 04:37:14,136 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 23:37:48] 2025-11-25 04:37:14,136 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 23:37:48] 2025-11-25 04:37:14,136 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 23:37:48] 2025-11-25 04:37:14,136 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 23:37:48] 2025-11-25 04:37:14,136 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 23:37:48] 2025-11-25 04:37:14,136 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 23:37:48] 2025-11-25 04:37:14,136 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 23:37:48] 2025-11-25 04:37:14,137 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 23:37:48] 2025-11-25 04:37:14,137 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 23:37:48] 2025-11-25 04:37:14,137 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 23:37:48] 2025-11-25 04:37:14,137 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 23:37:48] 2025-11-25 04:37:14,137 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 23:37:48] 2025-11-25 04:37:14,137 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 23:37:48] 2025-11-25 04:37:14,137 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 23:37:48] 2025-11-25 04:37:14,137 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 23:37:48] 2025-11-25 04:37:14,137 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 23:37:48] 2025-11-25 04:37:14,137 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 23:37:48] 2025-11-25 04:37:14,137 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 23:37:48] 2025-11-25 04:37:14,137 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 23:37:48] 2025-11-25 04:37:14,138 | INFO     | job 6895350385 has completed (purged errors)
[2025-11-24 23:37:48] 2025-11-25 04:37:14,138 | INFO     | overall cleanup function is called
[2025-11-24 23:37:48] 2025-11-25 04:37:15,166 | INFO     | --- collectZombieJob: --- 10, [693299]
[2025-11-24 23:37:48] 2025-11-25 04:37:15,166 | INFO     | zombie collector waiting for pid 693299
[2025-11-24 23:37:48] 2025-11-25 04:37:15,167 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 23:37:48] 2025-11-25 04:37:15,167 | INFO     | collected zombie processes
[2025-11-24 23:37:48] 2025-11-25 04:37:15,167 | INFO     | will attempt to kill all subprocesses of pid=693299
[2025-11-24 23:37:48] 2025-11-25 04:37:16,673 | INFO     | process IDs to be killed: [693299] (in reverse order)
[2025-11-24 23:37:48] 2025-11-25 04:37:17,010 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 23:37:48] 2025-11-25 04:37:17,010 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 23:37:48] 2025-11-25 04:37:17,034 | INFO     | did not find any defunct processes belonging to 693299
[2025-11-24 23:37:48] 2025-11-25 04:37:17,151 | INFO     | did not find any defunct processes belonging to 693299
[2025-11-24 23:37:48] 2025-11-25 04:37:17,172 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 23:37:48] 2025-11-25 04:37:17,172 | INFO     | ready for new job
[2025-11-24 23:37:48] 2025-11-25 04:37:17,172 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 23:37:48] 2025-11-25 04:37:17,215 | INFO     | ***************************************
[2025-11-24 23:37:48] 2025-11-25 04:37:17,216 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 23:37:48] 2025-11-25 04:37:17,216 | INFO     | ***************************************
[2025-11-24 23:37:48] 2025-11-25 04:37:17,216 | INFO     | 
[2025-11-24 23:37:48] 2025-11-25 04:37:17,292 | INFO     | architecture information:
[2025-11-24 23:37:48] 2025-11-25 04:37:17,337 | INFO     | executing command: cat /etc/os-release
[2025-11-24 23:37:48] 2025-11-25 04:37:17,424 | INFO     | cat /etc/os-release:
[2025-11-24 23:37:48] NAME="CentOS Linux"
[2025-11-24 23:37:48] VERSION="7 (Core)"
[2025-11-24 23:37:48] ID="centos"
[2025-11-24 23:37:48] ID_LIKE="rhel fedora"
[2025-11-24 23:37:48] VERSION_ID="7"
[2025-11-24 23:37:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 23:37:48] ANSI_COLOR="0;31"
[2025-11-24 23:37:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 23:37:48] HOME_URL="https://www.centos.org/"
[2025-11-24 23:37:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 23:37:48] 
[2025-11-24 23:37:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 23:37:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 23:37:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 23:37:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 23:37:48] 
[2025-11-24 23:37:48] 2025-11-25 04:37:17,424 | INFO     | ***************************************
[2025-11-24 23:37:48] 2025-11-25 04:37:17,928 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-24 23:37:48] 2025-11-25 04:37:17,986 | INFO     | sufficient remaining disk space (72122105856 B)
[2025-11-24 23:37:48] 2025-11-25 04:37:17,986 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 23:37:48] 2025-11-25 04:37:17,987 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 23:37:48] 2025-11-25 04:37:17,987 | INFO     | update_server=False
[2025-11-24 23:37:48] 2025-11-25 04:37:17,987 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 23:37:48] 2025-11-25 04:37:17,990 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 23:37:48] 2025-11-25 04:37:18,166 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 23:37:48] 2025-11-25 04:37:18,167 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 23:37:48] 2025-11-25 04:37:18,167 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:37:48] 2025-11-25 04:37:18,167 | INFO     | will abort loop
[2025-11-24 23:37:48] 2025-11-25 04:37:18,179 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 23:37:48] 2025-11-25 04:37:18,200 | INFO     | all job control threads have been joined
[2025-11-24 23:37:48] 2025-11-25 04:37:18,598 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 23:37:48] 2025-11-25 04:37:18,647 | INFO     | all data control threads have been joined
[2025-11-24 23:37:48] 2025-11-25 04:37:18,766 | INFO     | all payload control threads have been joined
[2025-11-24 23:37:48] 2025-11-25 04:37:18,992 | INFO     | [job] retrieve thread has finished
[2025-11-24 23:37:48] 2025-11-25 04:37:19,172 | INFO     | [job] job monitor thread has finished
[2025-11-24 23:37:48] 2025-11-25 04:37:19,206 | INFO     | [job] control thread has finished
[2025-11-24 23:37:48] 2025-11-25 04:37:19,219 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 23:37:48] 2025-11-25 04:37:19,318 | INFO     | [data] copytool_in thread has finished
[2025-11-24 23:37:48] 2025-11-25 04:37:19,342 | INFO     | [job] validate thread has finished
[2025-11-24 23:37:48] 2025-11-25 04:37:19,343 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 23:37:48] 2025-11-25 04:37:19,502 | INFO     | [payload] validate_post thread has finished
[2025-11-24 23:37:48] 2025-11-25 04:37:19,571 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 23:37:48] 2025-11-25 04:37:19,606 | INFO     | [job] queue monitor thread has finished
[2025-11-24 23:37:48] 2025-11-25 04:37:19,617 | INFO     | [payload] failed_post thread has finished
[2025-11-24 23:37:48] 2025-11-25 04:37:19,653 | INFO     | [data] control thread has finished
[2025-11-24 23:37:48] 2025-11-25 04:37:19,772 | INFO     | [payload] control thread has finished
[2025-11-24 23:37:48] 2025-11-25 04:37:19,997 | INFO     | [data] copytool_out thread has finished
[2025-11-24 23:37:48] 2025-11-25 04:37:20,435 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 23:37:48] 2025-11-25 04:37:20,702 | INFO     | [monitor] cgroup control has ended
[2025-11-24 23:37:48] 2025-11-25 04:37:22,189 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 23:37:48] 2025-11-25 04:37:23,829 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140116814620480)>', '<ExcThread(monitor, started 140116328707840)>']
[2025-11-24 23:37:48] 2025-11-25 04:37:28,855 | INFO     | all workflow threads have been joined
[2025-11-24 23:37:48] 2025-11-25 04:37:28,855 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 23:37:48] 2025-11-25 04:37:28,856 | INFO     | traces error code: 0
[2025-11-24 23:37:48] 2025-11-25 04:37:28,856 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 23:37:48] 2025-11-25 04:37:46,599 | INFO     | PID=676801 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 23:37:48] 2025-11-25 04:37:46,603 | INFO     | .. there are 24 such processes running
[2025-11-24 23:37:48] 2025-11-25 04:37:46,604 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 23:37:48] 2025-11-25 04:37:46,604 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 23:37:48] 2025-11-25 04:37:46,604 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 23:37:48] 2025-11-25 04:37:46,604 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 23:37:48] 2025-11-25 04:37:46,604 | INFO     | [monitor] control thread has ended
[2025-11-24 23:37:48] 2025-11-25 04:37:46,958 [wrapper] ==== pilot stdout END ====
[2025-11-24 23:37:48] 2025-11-25 04:37:46,982 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 23:37:48] 2025-11-25 04:37:46,999 [wrapper] pilotpid: 676801
[2025-11-24 23:37:48] 2025-11-25 04:37:47,026 [wrapper] Pilot exit status: 0
[2025-11-24 23:37:48] 2025-11-25 04:37:47,130 [wrapper] pandaids: 6895350385
[2025-11-24 23:37:48] 2025-11-25 04:37:47,678 [wrapper] cleanup supervisor_pilot  642262 676802
[2025-11-24 23:37:48] 2025-11-25 04:37:47,700 [wrapper] Test setup, not cleaning
[2025-11-24 23:37:48] 2025-11-25 04:37:47,716 [wrapper] apfmon messages muted
[2025-11-24 23:37:48] 2025-11-25 04:37:47,731 [wrapper] ==== wrapper stdout END ====
[2025-11-24 23:37:48] 2025-11-25 04:37:47,747 [wrapper] ==== wrapper stderr END ====
[2025-11-24 23:37:48]  *** Error codes and diagnostics ***
[2025-11-24 23:37:48]     "exeErrorCode": 0,
[2025-11-24 23:37:48]     "exeErrorDiag": "",
[2025-11-24 23:37:48]     "pilotErrorCode": 0,
[2025-11-24 23:37:48]     "pilotErrorDiag": "",
[2025-11-24 23:37:48]  *** Listing of results directory ***
[2025-11-24 23:37:48] total 1346168
[2025-11-24 23:37:48] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 15:41 pilot3.tar.gz
[2025-11-24 23:37:48] -rwx------. 1 boincer umatlas     36292 Nov 22 16:08 runpilot2-wrapper.sh
[2025-11-24 23:37:48] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 16:08 queuedata.json
[2025-11-24 23:37:48] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 23:37:48] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:03 run_atlas
[2025-11-24 23:37:48] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:03 job.xml
[2025-11-24 23:37:48] -rw-r--r--. 2 boincer umatlas 413720930 Nov 24 00:03 EVNT.47483658._000510.pool.root.1
[2025-11-24 23:37:48] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:03 start_atlas.sh
[2025-11-24 23:37:48] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:03 shared
[2025-11-24 23:37:48] -rw-r--r--. 2 boincer umatlas    590100 Nov 24 00:03 input.tar.gz
[2025-11-24 23:37:48] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:03 boinc_lockfile
[2025-11-24 23:37:48] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 00:03 pandaJob.out
[2025-11-24 23:37:48] -rw-------. 1 boincer umatlas        57 Nov 24 00:03 setup.sh.local
[2025-11-24 23:37:48] -rw-------. 1 boincer umatlas    989786 Nov 24 00:04 agis_schedconf.cvmfs.json
[2025-11-24 23:37:48] drwx------. 5 boincer umatlas      4096 Nov 24 00:04 pilot3
[2025-11-24 23:37:48] -rw-r--r--. 1 boincer umatlas       533 Nov 24 23:20 boinc_task_state.xml
[2025-11-24 23:37:48] -rw-------. 1 boincer umatlas 934313086 Nov 24 23:35 HITS.47556137._005052.pool.root.1
[2025-11-24 23:37:48] -rw-------. 1 boincer umatlas      1062 Nov 24 23:36 memory_monitor_summary.json
[2025-11-24 23:37:48] -rw-------. 1 boincer umatlas   1516227 Nov 24 23:36 agis_ddmendpoints.agis.ALL.json
[2025-11-24 23:37:48] -rw-------. 1 boincer umatlas   2535683 Nov 24 23:36 log.47556137._005052.job.log.tgz.1
[2025-11-24 23:37:48] -rw-------. 1 boincer umatlas        95 Nov 24 23:37 pilot_heartbeat.json
[2025-11-24 23:37:48] -rw-r--r--. 1 boincer umatlas      6846 Nov 24 23:37 init_data.xml
[2025-11-24 23:37:48] -rw-------. 1 boincer umatlas      8635 Nov 24 23:37 heartbeat.json
[2025-11-24 23:37:48] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 23:37 boinc_mmap_file
[2025-11-24 23:37:48] -rw-r--r--. 1 boincer umatlas        29 Nov 24 23:37 wrapper_checkpoint.txt
[2025-11-24 23:37:48] -rw-------. 1 boincer umatlas       822 Nov 24 23:37 pilotlog.txt
[2025-11-24 23:37:48] -rw-------. 1 boincer umatlas  10726713 Nov 24 23:37 log.47556137._005052.job.log.1
[2025-11-24 23:37:48] -rw-------. 1 boincer umatlas       353 Nov 24 23:37 output.list
[2025-11-24 23:37:48] -rw-r--r--. 1 boincer umatlas       620 Nov 24 23:37 runtime_log
[2025-11-24 23:37:48] -rw-------. 1 boincer umatlas  13281280 Nov 24 23:37 result.tar.gz
[2025-11-24 23:37:48] -rw-r--r--. 1 boincer umatlas      9348 Nov 24 23:37 runtime_log.err
[2025-11-24 23:37:48] -rw-------. 1 boincer umatlas       661 Nov 24 23:37 AjKNDmt19g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmVIIKDmGzZY7n.diag
[2025-11-24 23:37:48] -rw-r--r--. 1 boincer umatlas     21373 Nov 24 23:37 stderr.txt
[2025-11-24 23:37:48] HITS file was successfully produced:
[2025-11-24 23:37:48] -rw-------. 1 boincer umatlas 934313086 Nov 24 23:35 shared/HITS.pool.root.1
[2025-11-24 23:37:48]  *** Contents of shared directory: ***
[2025-11-24 23:37:48] total 1330020
[2025-11-24 23:37:48] -rw-r--r--. 2 boincer umatlas 413720930 Nov 24 00:03 ATLAS.root_0
[2025-11-24 23:37:48] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:03 start_atlas.sh
[2025-11-24 23:37:48] -rw-r--r--. 2 boincer umatlas    590100 Nov 24 00:03 input.tar.gz
[2025-11-24 23:37:48] -rw-------. 1 boincer umatlas 934313086 Nov 24 23:35 HITS.pool.root.1
[2025-11-24 23:37:48] -rw-------. 1 boincer umatlas  13281280 Nov 24 23:37 result.tar.gz
23:37:49 (669755): run_atlas exited; CPU time 247649.138847
23:37:49 (669755): called boinc_finish(0)

</stderr_txt>
]]>

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