Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:16:34 (2905657): wrapper (7.7.26015): starting
00:16:34 (2905657): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:16:34] Arguments: --nthreads 9
[2025-11-24 00:16:34] Threads: 9
[2025-11-24 00:16:34] Checking for CVMFS
[2025-11-24 00:16:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:16:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:16:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:16:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:16:38] 2.13.2.0 10847 32527 258168 153235 1 73 40630324 40960001 15188 16776704 0 31315850 99.706 22642991 40125 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:16:38] CVMFS is ok
[2025-11-24 00:16:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:16:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:16:38] Further information can be found at the LHC@home message board.
[2025-11-24 00:16:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:16:38] Checking for apptainer binary...
[2025-11-24 00:16:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:16:38] Running /usr/bin/apptainer --version
[2025-11-24 00:16:39] apptainer version 1.4.4-1.el9
[2025-11-24 00:16:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:16:40] c-210-35-4.aglt2.org
[2025-11-24 00:16:40] apptainer works
[2025-11-24 00:16:40] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:16:40] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:16:40] Starting ATLAS job with PandaID=6895356019
[2025-11-24 00:16:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:04 (2905657): BOINC client no longer exists - exiting
00:20:04 (2905657): timer handler: client dead, exiting
00:31:09 (2936164): wrapper (7.7.26015): starting
00:31:09 (2936164): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:31:09] Arguments: --nthreads 9
[2025-11-24 00:31:09] Threads: 9
[2025-11-24 00:31:09] This job has been restarted, cleaning up previous attempt
[2025-11-24 00:31:09] Checking for CVMFS
[2025-11-24 00:31:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:31:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:31:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:31:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:31:10] 2.13.2.0 10847 32541 260776 153235 3 87 40648639 40960001 11108 16776704 0 31368083 99.706 22642994 40125 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:31:10] CVMFS is ok
[2025-11-24 00:31:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:31:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:31:11] Further information can be found at the LHC@home message board.
[2025-11-24 00:31:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:31:11] Checking for apptainer binary...
[2025-11-24 00:31:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:31:11] Running /usr/bin/apptainer --version
[2025-11-24 00:31:11] apptainer version 1.4.4-1.el9
[2025-11-24 00:31:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:31:11] c-210-35-4.aglt2.org
[2025-11-24 00:31:11] apptainer works
[2025-11-24 00:31:11] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:31:11] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:31:11] Starting ATLAS job with PandaID=6895356019
[2025-11-24 00:31:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 19:49:40]  *** The last 200 lines of the pilot log: ***
[2025-11-25 19:49:40] 2025-11-26 00:49:05,204 | INFO     | sum of deviations: 17611153816021.273
[2025-11-25 19:49:40] 2025-11-26 00:49:05,205 | INFO     | mean x: 1764040239.7877007
[2025-11-25 19:49:40] 2025-11-26 00:49:05,205 | INFO     | mean y: 3028216.0650215433
[2025-11-25 19:49:40] 2025-11-26 00:49:05,205 | INFO     | intersect: -6018379414.890467
[2025-11-25 19:49:40] 2025-11-26 00:49:05,207 | INFO     | chi2: 9.301118877093463
[2025-11-25 19:49:40] 2025-11-26 00:49:05,210 | INFO     | sum of square deviations: 5129141505847.818
[2025-11-25 19:49:40] 2025-11-26 00:49:05,406 | INFO     | sum of deviations: 18576759594456.1
[2025-11-25 19:49:40] 2025-11-26 00:49:05,406 | INFO     | mean x: 1764040087.310832
[2025-11-25 19:49:40] 2025-11-26 00:49:05,406 | INFO     | mean y: 3033083.646389325
[2025-11-25 19:49:40] 2025-11-26 00:49:05,406 | INFO     | intersect: -6385979303.630291
[2025-11-25 19:49:40] 2025-11-26 00:49:05,409 | INFO     | chi2: 5.736159661673296
[2025-11-25 19:49:40] 2025-11-26 00:49:05,409 | INFO     | current chi2=5.736159661673296 (change=38.32828353801443 %)
[2025-11-25 19:49:40] 2025-11-26 00:49:05,412 | INFO     | sum of square deviations: 5099012419148.651
[2025-11-25 19:49:40] 2025-11-26 00:49:05,708 | INFO     | sum of deviations: 19131842698746.156
[2025-11-25 19:49:40] 2025-11-26 00:49:05,709 | INFO     | mean x: 1764039934.833661
[2025-11-25 19:49:40] 2025-11-26 00:49:05,709 | INFO     | mean y: 3035891.626818718
[2025-11-25 19:49:40] 2025-11-26 00:49:05,709 | INFO     | intersect: -6615762372.288555
[2025-11-25 19:49:40] 2025-11-26 00:49:05,719 | INFO     | chi2: 4.210687746467022
[2025-11-25 19:49:40] 2025-11-26 00:49:05,719 | INFO     | current chi2=4.210687746467022 (change=26.59395841783942 %)
[2025-11-25 19:49:40] 2025-11-26 00:49:05,750 | INFO     | sum of square deviations: 5069001148555.4375
[2025-11-25 19:49:40] 2025-11-26 00:49:05,852 | INFO     | PID=2954534 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 19:49:40] 2025-11-26 00:49:05,853 | INFO     | .. there are 10 such processes running
[2025-11-25 19:49:40] 2025-11-26 00:49:05,898 | INFO     | monitor loop #9517: job 0:6895356019 is in state 'finished'
[2025-11-25 19:49:40] 2025-11-26 00:49:05,908 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 19:49:40] 2025-11-26 00:49:05,935 | INFO     | sum of deviations: 19147373833964.01
[2025-11-25 19:49:40] 2025-11-26 00:49:05,935 | INFO     | mean x: 1764039782.355398
[2025-11-25 19:49:40] 2025-11-26 00:49:05,935 | INFO     | mean y: 3035969.827029157
[2025-11-25 19:49:40] 2025-11-26 00:49:05,935 | INFO     | intersect: -6660353558.180673
[2025-11-25 19:49:40] 2025-11-26 00:49:05,938 | INFO     | chi2: 4.097317401525007
[2025-11-25 19:49:40] 2025-11-26 00:49:05,938 | INFO     | current chi2=4.097317401525007 (change=2.692442464705146 %)
[2025-11-25 19:49:40] 2025-11-26 00:49:05,938 | INFO     | right removable region: 2537
[2025-11-25 19:49:40] 2025-11-26 00:49:05,941 | INFO     | sum of square deviations: 5129123148507.819
[2025-11-25 19:49:40] 2025-11-26 00:49:06,055 | INFO     | sum of deviations: 16679115375949.945
[2025-11-25 19:49:40] 2025-11-26 00:49:06,055 | INFO     | mean x: 1764040392.310832
[2025-11-25 19:49:40] 2025-11-26 00:49:06,055 | INFO     | mean y: 3032912.103610675
[2025-11-25 19:49:40] 2025-11-26 00:49:06,055 | INFO     | intersect: -5733353674.7047205
[2025-11-25 19:49:40] 2025-11-26 00:49:06,058 | INFO     | chi2: 6.223637367273968
[2025-11-25 19:49:40] 2025-11-26 00:49:06,058 | INFO     | current chi2=6.223637367273968 (change=33.087218328094174 %)
[2025-11-25 19:49:40] 2025-11-26 00:49:06,061 | INFO     | sum of square deviations: 5098979590929.777
[2025-11-25 19:49:40] 2025-11-26 00:49:06,193 | INFO     | sum of deviations: 16389219804065.18
[2025-11-25 19:49:40] 2025-11-26 00:49:06,194 | INFO     | mean x: 1764040544.8246167
[2025-11-25 19:49:40] 2025-11-26 00:49:06,194 | INFO     | mean y: 3034378.6417616988
[2025-11-25 19:49:40] 2025-11-26 00:49:06,194 | INFO     | intersect: -5666972279.914346
[2025-11-25 19:49:40] 2025-11-26 00:49:06,196 | INFO     | chi2: 6.0646927725271045
[2025-11-25 19:49:40] 2025-11-26 00:49:06,197 | INFO     | current chi2=6.0646927725271045 (change=2.5538858607451775 %)
[2025-11-25 19:49:40] 2025-11-26 00:49:06,197 | INFO     | left removable region: 20
[2025-11-25 19:49:40] 2025-11-26 00:49:06,199 | INFO     | sum of square deviations: 4944183274872.308
[2025-11-25 19:49:40] 2025-11-26 00:49:06,318 | INFO     | sum of deviations: 17454771670556.127
[2025-11-25 19:49:40] 2025-11-26 00:49:06,319 | INFO     | mean x: 1764040361.9185538
[2025-11-25 19:49:40] 2025-11-26 00:49:06,319 | INFO     | mean y: 3044427.215335717
[2025-11-25 19:49:40] 2025-11-26 00:49:06,319 | INFO     | intersect: -6224661954.831916
[2025-11-25 19:49:40] 2025-11-26 00:49:06,321 | INFO     | chi2: 0.7149691840862973
[2025-11-25 19:49:40] 2025-11-26 00:49:06,321 | INFO     | current memory leak: 3.53 B/s (using 2517 data points, chi2=0.71)
[2025-11-25 19:49:40] 2025-11-26 00:49:06,323 | INFO     | could have reported an average CPU frequency of 2759 MHz (88 samples)
[2025-11-25 19:49:40] 2025-11-26 00:49:06,323 | INFO     | ..............................
[2025-11-25 19:49:40] 2025-11-26 00:49:06,324 | INFO     | . Timing measurements:
[2025-11-25 19:49:40] 2025-11-26 00:49:06,324 | INFO     | . get job = 0 s
[2025-11-25 19:49:40] 2025-11-26 00:49:06,324 | INFO     | . initial setup = 1 s
[2025-11-25 19:49:40] 2025-11-26 00:49:06,324 | INFO     | . payload setup = 22 s
[2025-11-25 19:49:40] 2025-11-26 00:49:06,324 | INFO     | . stage-in = 0 s
[2025-11-25 19:49:40] 2025-11-26 00:49:06,324 | INFO     | . payload execution = 155738 s
[2025-11-25 19:49:40] 2025-11-26 00:49:06,324 | INFO     | . stage-out = 7 s
[2025-11-25 19:49:40] 2025-11-26 00:49:06,324 | INFO     | . log creation = 2 s
[2025-11-25 19:49:40] 2025-11-26 00:49:06,324 | INFO     | ..............................
[2025-11-25 19:49:40] 2025-11-26 00:49:06,628 | INFO     | 
[2025-11-25 19:49:40] 2025-11-26 00:49:06,628 | INFO     | job summary report
[2025-11-25 19:49:40] 2025-11-26 00:49:06,628 | INFO     | --------------------------------------------------
[2025-11-25 19:49:40] 2025-11-26 00:49:06,629 | INFO     | PanDA job id: 6895356019
[2025-11-25 19:49:40] 2025-11-26 00:49:06,629 | INFO     | task id: 47556137
[2025-11-25 19:49:40] 2025-11-26 00:49:06,629 | INFO     | errors: (none)
[2025-11-25 19:49:40] 2025-11-26 00:49:06,629 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 19:49:40] 2025-11-26 00:49:06,629 | INFO     | pilot state: finished 
[2025-11-25 19:49:40] 2025-11-26 00:49:06,629 | INFO     | transexitcode: 0
[2025-11-25 19:49:40] 2025-11-26 00:49:06,629 | INFO     | exeerrorcode: 0
[2025-11-25 19:49:40] 2025-11-26 00:49:06,629 | INFO     | exeerrordiag: 
[2025-11-25 19:49:40] 2025-11-26 00:49:06,629 | INFO     | exitcode: 0
[2025-11-25 19:49:40] 2025-11-26 00:49:06,629 | INFO     | exitmsg: OK
[2025-11-25 19:49:40] 2025-11-26 00:49:06,629 | INFO     | cpuconsumptiontime: 254824 s
[2025-11-25 19:49:40] 2025-11-26 00:49:06,629 | INFO     | nevents: 1000
[2025-11-25 19:49:40] 2025-11-26 00:49:06,629 | INFO     | neventsw: 0
[2025-11-25 19:49:40] 2025-11-26 00:49:06,629 | INFO     | pid: 2987422
[2025-11-25 19:49:40] 2025-11-26 00:49:06,629 | INFO     | pgrp: 2987422
[2025-11-25 19:49:40] 2025-11-26 00:49:06,629 | INFO     | corecount: 9
[2025-11-25 19:49:40] 2025-11-26 00:49:06,629 | INFO     | event service: False
[2025-11-25 19:49:40] 2025-11-26 00:49:06,630 | INFO     | sizes: {0: 2297978, 1: 2298834, 2: 2298834, 13: 2298862, 18: 2299180, 23: 2299208, 155765: 2397235, 155772: 2407025, 155775: 2407081, 155803: 2407327}
[2025-11-25 19:49:40] 2025-11-26 00:49:06,630 | INFO     | --------------------------------------------------
[2025-11-25 19:49:40] 2025-11-26 00:49:06,630 | INFO     | 
[2025-11-25 19:49:40] 2025-11-26 00:49:06,630 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 19:49:40] 2025-11-26 00:49:06,686 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 19:49:40] 2025-11-26 00:49:06,687 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 19:49:40] 2025-11-26 00:49:06,687 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 19:49:40] 2025-11-26 00:49:06,687 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 19:49:40] 2025-11-26 00:49:06,687 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 19:49:40] 2025-11-26 00:49:06,687 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 19:49:40] 2025-11-26 00:49:06,687 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 19:49:40] 2025-11-26 00:49:06,687 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 19:49:40] 2025-11-26 00:49:06,692 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 19:49:40] 2025-11-26 00:49:06,692 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 19:49:40] 2025-11-26 00:49:06,692 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 19:49:40] 2025-11-26 00:49:06,693 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 19:49:40] 2025-11-26 00:49:06,693 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 19:49:40] 2025-11-26 00:49:06,693 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 19:49:40] 2025-11-26 00:49:06,693 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 19:49:40] 2025-11-26 00:49:06,693 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 19:49:40] 2025-11-26 00:49:06,693 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 19:49:40] 2025-11-26 00:49:06,693 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 19:49:40] 2025-11-26 00:49:06,693 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 19:49:40] 2025-11-26 00:49:06,693 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 19:49:40] 2025-11-26 00:49:06,693 | INFO     | job 6895356019 has completed (purged errors)
[2025-11-25 19:49:40] 2025-11-26 00:49:06,693 | INFO     | overall cleanup function is called
[2025-11-25 19:49:40] 2025-11-26 00:49:07,720 | INFO     | --- collectZombieJob: --- 10, [2987422]
[2025-11-25 19:49:40] 2025-11-26 00:49:07,720 | INFO     | zombie collector waiting for pid 2987422
[2025-11-25 19:49:40] 2025-11-26 00:49:07,720 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 19:49:40] 2025-11-26 00:49:07,721 | INFO     | collected zombie processes
[2025-11-25 19:49:40] 2025-11-26 00:49:07,721 | INFO     | will attempt to kill all subprocesses of pid=2987422
[2025-11-25 19:49:40] 2025-11-26 00:49:08,616 | INFO     | process IDs to be killed: [2987422] (in reverse order)
[2025-11-25 19:49:40] 2025-11-26 00:49:09,081 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 19:49:40] 2025-11-26 00:49:09,082 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 19:49:40] 2025-11-26 00:49:09,110 | INFO     | did not find any defunct processes belonging to 2987422
[2025-11-25 19:49:40] 2025-11-26 00:49:09,143 | INFO     | did not find any defunct processes belonging to 2987422
[2025-11-25 19:49:40] 2025-11-26 00:49:09,152 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 19:49:40] 2025-11-26 00:49:09,153 | INFO     | ready for new job
[2025-11-25 19:49:40] 2025-11-26 00:49:09,153 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 19:49:40] 2025-11-26 00:49:09,170 | INFO     | ***************************************
[2025-11-25 19:49:40] 2025-11-26 00:49:09,170 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 19:49:40] 2025-11-26 00:49:09,170 | INFO     | ***************************************
[2025-11-25 19:49:40] 2025-11-26 00:49:09,170 | INFO     | 
[2025-11-25 19:49:40] 2025-11-26 00:49:09,177 | INFO     | architecture information:
[2025-11-25 19:49:40] 2025-11-26 00:49:09,178 | INFO     | executing command: cat /etc/os-release
[2025-11-25 19:49:40] 2025-11-26 00:49:09,242 | INFO     | cat /etc/os-release:
[2025-11-25 19:49:40] NAME="CentOS Linux"
[2025-11-25 19:49:40] VERSION="7 (Core)"
[2025-11-25 19:49:40] ID="centos"
[2025-11-25 19:49:40] ID_LIKE="rhel fedora"
[2025-11-25 19:49:40] VERSION_ID="7"
[2025-11-25 19:49:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 19:49:40] ANSI_COLOR="0;31"
[2025-11-25 19:49:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 19:49:40] HOME_URL="https://www.centos.org/"
[2025-11-25 19:49:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 19:49:40] 
[2025-11-25 19:49:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 19:49:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 19:49:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 19:49:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 19:49:40] 
[2025-11-25 19:49:40] 2025-11-26 00:49:09,243 | INFO     | ***************************************
[2025-11-25 19:49:40] 2025-11-26 00:49:09,746 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 19:49:40] 2025-11-26 00:49:09,834 | INFO     | sufficient remaining disk space (70700236800 B)
[2025-11-25 19:49:40] 2025-11-26 00:49:09,834 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 19:49:40] 2025-11-26 00:49:09,834 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 19:49:40] 2025-11-26 00:49:09,834 | INFO     | update_server=False
[2025-11-25 19:49:40] 2025-11-26 00:49:09,834 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 19:49:40] 2025-11-26 00:49:09,834 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:49:40] 2025-11-26 00:49:09,835 | INFO     | aborting loop
[2025-11-25 19:49:40] 2025-11-26 00:49:10,144 | INFO     | all data control threads have been joined
[2025-11-25 19:49:40] 2025-11-26 00:49:10,306 | INFO     | all payload control threads have been joined
[2025-11-25 19:49:40] 2025-11-26 00:49:10,840 | INFO     | [job] retrieve thread has finished
[2025-11-25 19:49:40] 2025-11-26 00:49:10,845 | INFO     | [job] job monitor thread has finished
[2025-11-25 19:49:40] 2025-11-26 00:49:10,945 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 19:49:40] 2025-11-26 00:49:11,150 | INFO     | [data] control thread has finished
[2025-11-25 19:49:40] 2025-11-26 00:49:11,272 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 19:49:40] 2025-11-26 00:49:11,318 | INFO     | [payload] control thread has finished
[2025-11-25 19:49:40] 2025-11-26 00:49:11,382 | INFO     | all job control threads have been joined
[2025-11-25 19:49:40] 2025-11-26 00:49:11,457 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:49:40] 2025-11-26 00:49:11,707 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 19:49:40] 2025-11-26 00:49:11,712 | INFO     | [data] copytool_in thread has finished
[2025-11-25 19:49:40] 2025-11-26 00:49:11,837 | INFO     | [payload] validate_post thread has finished
[2025-11-25 19:49:40] 2025-11-26 00:49:12,036 | INFO     | [payload] failed_post thread has finished
[2025-11-25 19:49:40] 2025-11-26 00:49:12,184 | INFO     | [job] validate thread has finished
[2025-11-25 19:49:40] 2025-11-26 00:49:12,185 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 19:49:40] 2025-11-26 00:49:12,198 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 19:49:40] 2025-11-26 00:49:12,264 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 19:49:40] 2025-11-26 00:49:12,388 | INFO     | [job] control thread has finished
[2025-11-25 19:49:40] 2025-11-26 00:49:12,463 | INFO     | [job] queue monitor thread has finished
[2025-11-25 19:49:40] 2025-11-26 00:49:13,279 | INFO     | [data] copytool_out thread has finished
[2025-11-25 19:49:40] 2025-11-26 00:49:14,955 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 19:49:40] 2025-11-26 00:49:27,918 | INFO     | [monitor] cgroup control has ended
[2025-11-25 19:49:40] 2025-11-26 00:49:29,833 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139687742097216)>', '<ExcThread(monitor, started 139687393994496)>']
[2025-11-25 19:49:40] 2025-11-26 00:49:34,859 | INFO     | all workflow threads have been joined
[2025-11-25 19:49:40] 2025-11-26 00:49:34,859 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 19:49:40] 2025-11-26 00:49:34,860 | INFO     | traces error code: 0
[2025-11-25 19:49:40] 2025-11-26 00:49:34,860 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 19:49:40] 2025-11-26 00:49:38,319 | INFO     | PID=2954534 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 19:49:40] 2025-11-26 00:49:38,319 | INFO     | .. there are 10 such processes running
[2025-11-25 19:49:40] 2025-11-26 00:49:38,320 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 19:49:40] 2025-11-26 00:49:38,320 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 19:49:40] 2025-11-26 00:49:38,320 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 19:49:40] 2025-11-26 00:49:38,320 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 19:49:40] 2025-11-26 00:49:38,320 | INFO     | [monitor] control thread has ended
[2025-11-25 19:49:40] 2025-11-26 00:49:38,476 [wrapper] ==== pilot stdout END ====
[2025-11-25 19:49:40] 2025-11-26 00:49:38,501 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 19:49:40] 2025-11-26 00:49:38,522 [wrapper] pilotpid: 2954534
[2025-11-25 19:49:40] 2025-11-26 00:49:38,544 [wrapper] Pilot exit status: 0
[2025-11-25 19:49:40] 2025-11-26 00:49:38,631 [wrapper] pandaids: 6895356019 6895356019
[2025-11-25 19:49:40] 2025-11-26 00:49:38,876 [wrapper] cleanup supervisor_pilot 2796261 2954535
[2025-11-25 19:49:40] 2025-11-26 00:49:38,895 [wrapper] Test setup, not cleaning
[2025-11-25 19:49:40] 2025-11-26 00:49:38,921 [wrapper] apfmon messages muted
[2025-11-25 19:49:40] 2025-11-26 00:49:38,937 [wrapper] ==== wrapper stdout END ====
[2025-11-25 19:49:40] 2025-11-26 00:49:38,975 [wrapper] ==== wrapper stderr END ====
[2025-11-25 19:49:40]  *** Error codes and diagnostics ***
[2025-11-25 19:49:40]     "exeErrorCode": 0,
[2025-11-25 19:49:40]     "exeErrorDiag": "",
[2025-11-25 19:49:40]     "pilotErrorCode": 0,
[2025-11-25 19:49:40]     "pilotErrorDiag": "",
[2025-11-25 19:49:40]  *** Listing of results directory ***
[2025-11-25 19:49:40] total 1760208
[2025-11-25 19:49:40] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 19:49:40] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 04:19 pilot3.tar.gz
[2025-11-25 19:49:40] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 05:02 queuedata.json
[2025-11-25 19:49:40] -rwx------. 1 boincer umatlas     36292 Nov 23 05:05 runpilot2-wrapper.sh
[2025-11-25 19:49:40] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 19:49:40] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:16 run_atlas
[2025-11-25 19:49:40] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:16 job.xml
[2025-11-25 19:49:40] -rw-r--r--. 3 boincer umatlas 412083669 Nov 24 00:16 EVNT.47483658._000685.pool.root.1
[2025-11-25 19:49:40] -rw-r--r--. 3 boincer umatlas 412083669 Nov 24 00:16 ATLAS.root_0
[2025-11-25 19:49:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:16 start_atlas.sh
[2025-11-25 19:49:40] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:16 shared
[2025-11-25 19:49:40] -rw-r--r--. 2 boincer umatlas    590096 Nov 24 00:16 input.tar.gz
[2025-11-25 19:49:40] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:16 boinc_lockfile
[2025-11-25 19:49:40] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 00:31 pandaJob.out
[2025-11-25 19:49:40] -rw-------. 1 boincer umatlas        57 Nov 24 00:31 setup.sh.local
[2025-11-25 19:49:40] -rw-------. 1 boincer umatlas    989786 Nov 24 00:31 agis_schedconf.cvmfs.json
[2025-11-25 19:49:40] -rw-r--r--. 1 boincer umatlas       533 Nov 25 19:35 boinc_task_state.xml
[2025-11-25 19:49:40] -rw-r--r--. 1 boincer umatlas      6843 Nov 25 19:45 init_data.xml
[2025-11-25 19:49:40] -rw-------. 1 boincer umatlas 927850254 Nov 25 19:47 HITS.47556137._006802.pool.root.1
[2025-11-25 19:49:40] -rw-------. 1 boincer umatlas      1071 Nov 25 19:48 memory_monitor_summary.json
[2025-11-25 19:49:40] -rw-------. 1 boincer umatlas   1516240 Nov 25 19:48 agis_ddmendpoints.agis.ALL.json
[2025-11-25 19:49:40] -rw-------. 1 boincer umatlas   3386090 Nov 25 19:48 log.47556137._006802.job.log.tgz.1
[2025-11-25 19:49:40] -rw-------. 1 boincer umatlas        96 Nov 25 19:49 pilot_heartbeat.json
[2025-11-25 19:49:40] -rw-------. 1 boincer umatlas      8647 Nov 25 19:49 heartbeat.json
[2025-11-25 19:49:40] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 19:49 boinc_mmap_file
[2025-11-25 19:49:40] -rw-r--r--. 1 boincer umatlas        29 Nov 25 19:49 wrapper_checkpoint.txt
[2025-11-25 19:49:40] -rw-------. 1 boincer umatlas       823 Nov 25 19:49 pilotlog.txt
[2025-11-25 19:49:40] -rw-------. 1 boincer umatlas  19873587 Nov 25 19:49 log.47556137._006802.job.log.1
[2025-11-25 19:49:40] -rw-------. 1 boincer umatlas       353 Nov 25 19:49 output.list
[2025-11-25 19:49:40] -rw-r--r--. 1 boincer umatlas       620 Nov 25 19:49 runtime_log
[2025-11-25 19:49:40] -rw-------. 1 boincer umatlas  23275520 Nov 25 19:49 result.tar.gz
[2025-11-25 19:49:40] -rw-r--r--. 1 boincer umatlas      9439 Nov 25 19:49 runtime_log.err
[2025-11-25 19:49:40] -rw-------. 1 boincer umatlas       794 Nov 25 19:49 7pzKDmu9Lh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmomKKDm8GhOZn.diag
[2025-11-25 19:49:40] -rw-r--r--. 1 boincer umatlas     23622 Nov 25 19:49 stderr.txt
[2025-11-25 19:49:40] HITS file was successfully produced:
[2025-11-25 19:49:40] -rw-------. 1 boincer umatlas 927850254 Nov 25 19:47 shared/HITS.pool.root.1
[2025-11-25 19:49:40]  *** Contents of shared directory: ***
[2025-11-25 19:49:40] total 1331868
[2025-11-25 19:49:40] -rw-r--r--. 3 boincer umatlas 412083669 Nov 24 00:16 ATLAS.root_0
[2025-11-25 19:49:40] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:16 start_atlas.sh
[2025-11-25 19:49:40] -rw-r--r--. 2 boincer umatlas    590096 Nov 24 00:16 input.tar.gz
[2025-11-25 19:49:40] -rw-------. 1 boincer umatlas 927850254 Nov 25 19:47 HITS.pool.root.1
[2025-11-25 19:49:40] -rw-------. 1 boincer umatlas  23275520 Nov 25 19:49 result.tar.gz
19:49:41 (2936164): run_atlas exited; CPU time 256997.991475
19:49:41 (2936164): called boinc_finish(0)

</stderr_txt>
]]>

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