Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:20:28 (916436): wrapper (7.7.26015): starting
22:20:28 (916436): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 22:20:28] Arguments: --nthreads 8
[2025-11-24 22:20:28] Threads: 8
[2025-11-24 22:20:28] Checking for CVMFS
[2025-11-24 22:20:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 22:20:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 22:20:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 22:20:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 22:20:29] 2.13.3.0 9358 26367 223604 153268 0 69 31422549 32935937 26730 16776704 0 140418020 99.789 75672012 33448 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 22:20:29] CVMFS is ok
[2025-11-24 22:20:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 22:20:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 22:20:29] Further information can be found at the LHC@home message board.
[2025-11-24 22:20:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 22:20:29] Checking for apptainer binary...
[2025-11-24 22:20:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 22:20:29] Running /usr/bin/apptainer --version
[2025-11-24 22:20:29] apptainer version 1.4.4-1.el9
[2025-11-24 22:20:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 22:20:29] c-6-6.aglt2.org
[2025-11-24 22:20:29] apptainer works
[2025-11-24 22:20:29] Set ATHENA_PROC_NUMBER=8
[2025-11-24 22:20:29] Set ATHENA_CORE_NUMBER=8
[2025-11-24 22:20:29] Starting ATLAS job with PandaID=6895351009
[2025-11-24 22:20:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 21:36:32]  *** The last 200 lines of the pilot log: ***
[2025-11-25 21:36:32] 2025-11-26 02:35:48,993 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:36:32] 2025-11-26 02:35:50,101 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 21:36:32] 2025-11-26 02:35:50,108 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.17595
[2025-11-25 21:36:32] 2025-11-26 02:35:50,115 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895351009/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 21:36:32] 2025-11-26 02:35:50,116 | INFO     | extracted standard info from prmon json
[2025-11-25 21:36:32] 2025-11-26 02:35:50,116 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 21:36:32] 2025-11-26 02:35:50,116 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 21:36:32] 2025-11-26 02:35:50,143 | INFO     | fitting pss+swap vs Time
[2025-11-25 21:36:32] 2025-11-26 02:35:50,145 | INFO     | sum of square deviations: 799078149323.6093
[2025-11-25 21:36:32] 2025-11-26 02:35:50,189 | INFO     | sum of deviations: 4029112690919.0923
[2025-11-25 21:36:32] 2025-11-26 02:35:50,189 | INFO     | mean x: 1764082728.6732311
[2025-11-25 21:36:32] 2025-11-26 02:35:50,189 | INFO     | mean y: 2957848.3238512035
[2025-11-25 21:36:32] 2025-11-26 02:35:50,189 | INFO     | intersect: -8891901954.744095
[2025-11-25 21:36:32] 2025-11-26 02:35:50,190 | INFO     | chi2: 8.431815226295676
[2025-11-25 21:36:32] 2025-11-26 02:35:50,191 | INFO     | sum of square deviations: 790367597743.834
[2025-11-25 21:36:32] 2025-11-26 02:35:50,238 | INFO     | sum of deviations: 4536541289950.35
[2025-11-25 21:36:32] 2025-11-26 02:35:50,238 | INFO     | mean x: 1764082576.1756954
[2025-11-25 21:36:32] 2025-11-26 02:35:50,238 | INFO     | mean y: 2966732.71522694
[2025-11-25 21:36:32] 2025-11-26 02:35:50,239 | INFO     | intersect: -10122490672.861288
[2025-11-25 21:36:32] 2025-11-26 02:35:50,240 | INFO     | chi2: 4.87692420123243
[2025-11-25 21:36:32] 2025-11-26 02:35:50,240 | INFO     | current chi2=4.87692420123243 (change=42.16044742034754 %)
[2025-11-25 21:36:32] 2025-11-26 02:35:50,242 | INFO     | sum of square deviations: 781720582239.043
[2025-11-25 21:36:32] 2025-11-26 02:35:50,282 | INFO     | sum of deviations: 4663686549692.108
[2025-11-25 21:36:32] 2025-11-26 02:35:50,282 | INFO     | mean x: 1764082423.6781778
[2025-11-25 21:36:32] 2025-11-26 02:35:50,282 | INFO     | mean y: 2968972.6737692873
[2025-11-25 21:36:32] 2025-11-26 02:35:50,282 | INFO     | intersect: -10521414878.512068
[2025-11-25 21:36:32] 2025-11-26 02:35:50,283 | INFO     | chi2: 4.475773695238238
[2025-11-25 21:36:32] 2025-11-26 02:35:50,283 | INFO     | current chi2=4.475773695238238 (change=8.225481665120373 %)
[2025-11-25 21:36:32] 2025-11-26 02:35:50,283 | INFO     | right removable region: 1360
[2025-11-25 21:36:32] 2025-11-26 02:35:50,284 | INFO     | sum of square deviations: 790367034713.8346
[2025-11-25 21:36:32] 2025-11-26 02:35:50,312 | INFO     | sum of deviations: 3519081239382.195
[2025-11-25 21:36:32] 2025-11-26 02:35:50,312 | INFO     | mean x: 1764082881.1756954
[2025-11-25 21:36:32] 2025-11-26 02:35:50,312 | INFO     | mean y: 2966775.120058565
[2025-11-25 21:36:32] 2025-11-26 02:35:50,312 | INFO     | intersect: -7851549796.548912
[2025-11-25 21:36:32] 2025-11-26 02:35:50,313 | INFO     | chi2: 5.066057431058567
[2025-11-25 21:36:32] 2025-11-26 02:35:50,313 | INFO     | current chi2=5.066057431058567 (change=39.91735711594544 %)
[2025-11-25 21:36:32] 2025-11-26 02:35:50,314 | INFO     | sum of square deviations: 781719539383.3977
[2025-11-25 21:36:32] 2025-11-26 02:35:50,344 | INFO     | sum of deviations: 3286277542659.67
[2025-11-25 21:36:32] 2025-11-26 02:35:50,345 | INFO     | mean x: 1764083033.677443
[2025-11-25 21:36:32] 2025-11-26 02:35:50,345 | INFO     | mean y: 2970877.2498163115
[2025-11-25 21:36:32] 2025-11-26 02:35:50,345 | INFO     | intersect: -7413073068.042727
[2025-11-25 21:36:32] 2025-11-26 02:35:50,347 | INFO     | chi2: 4.364901727871844
[2025-11-25 21:36:32] 2025-11-26 02:35:50,347 | INFO     | current chi2=4.364901727871844 (change=13.840263611859893 %)
[2025-11-25 21:36:32] 2025-11-26 02:35:50,347 | INFO     | left removable region: 20
[2025-11-25 21:36:32] 2025-11-26 02:35:50,349 | INFO     | sum of square deviations: 746090090856.2065
[2025-11-25 21:36:32] 2025-11-26 02:35:50,392 | INFO     | sum of deviations: 3757202025017.947
[2025-11-25 21:36:32] 2025-11-26 02:35:50,392 | INFO     | mean x: 1764083003.1828358
[2025-11-25 21:36:32] 2025-11-26 02:35:50,392 | INFO     | mean y: 2985491.3104477613
[2025-11-25 21:36:32] 2025-11-26 02:35:50,393 | INFO     | intersect: -8880681927.797127
[2025-11-25 21:36:32] 2025-11-26 02:35:50,394 | INFO     | chi2: 0.29708354841662976
[2025-11-25 21:36:32] 2025-11-26 02:35:50,394 | INFO     | current memory leak: 5.04 B/s (using 1340 data points, chi2=0.30)
[2025-11-25 21:36:32] 2025-11-26 02:35:50,396 | INFO     | could have reported an average CPU frequency of 2600 MHz (49 samples)
[2025-11-25 21:36:32] 2025-11-26 02:35:50,396 | INFO     | ..............................
[2025-11-25 21:36:32] 2025-11-26 02:35:50,396 | INFO     | . Timing measurements:
[2025-11-25 21:36:32] 2025-11-26 02:35:50,396 | INFO     | . get job = 0 s
[2025-11-25 21:36:32] 2025-11-26 02:35:50,396 | INFO     | . initial setup = 4 s
[2025-11-25 21:36:32] 2025-11-26 02:35:50,396 | INFO     | . payload setup = 28 s
[2025-11-25 21:36:32] 2025-11-26 02:35:50,396 | INFO     | . stage-in = 0 s
[2025-11-25 21:36:32] 2025-11-26 02:35:50,397 | INFO     | . payload execution = 83605 s
[2025-11-25 21:36:32] 2025-11-26 02:35:50,397 | INFO     | . stage-out = 4 s
[2025-11-25 21:36:32] 2025-11-26 02:35:50,397 | INFO     | . log creation = 0 s
[2025-11-25 21:36:32] 2025-11-26 02:35:50,397 | INFO     | ..............................
[2025-11-25 21:36:32] 2025-11-26 02:35:50,424 | INFO     | time since job start (83690s) is within the limit (172800.0s)
[2025-11-25 21:36:32] 2025-11-26 02:35:50,493 | INFO     | 
[2025-11-25 21:36:32] 2025-11-26 02:35:50,494 | INFO     | job summary report
[2025-11-25 21:36:32] 2025-11-26 02:35:50,494 | INFO     | --------------------------------------------------
[2025-11-25 21:36:32] 2025-11-26 02:35:50,494 | INFO     | PanDA job id: 6895351009
[2025-11-25 21:36:32] 2025-11-26 02:35:50,494 | INFO     | task id: 47556137
[2025-11-25 21:36:32] 2025-11-26 02:35:50,494 | INFO     | errors: (none)
[2025-11-25 21:36:32] 2025-11-26 02:35:50,494 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 21:36:32] 2025-11-26 02:35:50,494 | INFO     | pilot state: finished 
[2025-11-25 21:36:32] 2025-11-26 02:35:50,494 | INFO     | transexitcode: 0
[2025-11-25 21:36:32] 2025-11-26 02:35:50,494 | INFO     | exeerrorcode: 0
[2025-11-25 21:36:32] 2025-11-26 02:35:50,494 | INFO     | exeerrordiag: 
[2025-11-25 21:36:32] 2025-11-26 02:35:50,494 | INFO     | exitcode: 0
[2025-11-25 21:36:32] 2025-11-26 02:35:50,494 | INFO     | exitmsg: OK
[2025-11-25 21:36:32] 2025-11-26 02:35:50,494 | INFO     | cpuconsumptiontime: 306010 s
[2025-11-25 21:36:32] 2025-11-26 02:35:50,494 | INFO     | nevents: 1000
[2025-11-25 21:36:32] 2025-11-26 02:35:50,494 | INFO     | neventsw: 0
[2025-11-25 21:36:32] 2025-11-26 02:35:50,495 | INFO     | pid: 928531
[2025-11-25 21:36:32] 2025-11-26 02:35:50,495 | INFO     | pgrp: 928531
[2025-11-25 21:36:32] 2025-11-26 02:35:50,495 | INFO     | corecount: 8
[2025-11-25 21:36:32] 2025-11-26 02:35:50,495 | INFO     | event service: False
[2025-11-25 21:36:32] 2025-11-26 02:35:50,495 | INFO     | sizes: {0: 2284037, 1: 2284236, 12: 2284236, 14: 2284526, 23: 2284554, 83638: 2349729, 83639: 2349856, 83643: 2358911, 83645: 2358967, 83651: 2359213}
[2025-11-25 21:36:32] 2025-11-26 02:35:50,495 | INFO     | --------------------------------------------------
[2025-11-25 21:36:32] 2025-11-26 02:35:50,495 | INFO     | 
[2025-11-25 21:36:32] 2025-11-26 02:35:50,495 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-25 21:36:32] 2025-11-26 02:35:50,514 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 21:36:32] 2025-11-26 02:35:50,515 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 21:36:32] 2025-11-26 02:35:50,515 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 21:36:32] 2025-11-26 02:35:50,515 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 21:36:32] 2025-11-26 02:35:50,515 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 21:36:32] 2025-11-26 02:35:50,515 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 21:36:32] 2025-11-26 02:35:50,515 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 21:36:32] 2025-11-26 02:35:50,515 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 21:36:32] 2025-11-26 02:35:50,515 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 21:36:32] 2025-11-26 02:35:50,516 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 21:36:32] 2025-11-26 02:35:50,516 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 21:36:32] 2025-11-26 02:35:50,516 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 21:36:32] 2025-11-26 02:35:50,516 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 21:36:32] 2025-11-26 02:35:50,516 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 21:36:32] 2025-11-26 02:35:50,516 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 21:36:32] 2025-11-26 02:35:50,516 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 21:36:32] 2025-11-26 02:35:50,516 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 21:36:32] 2025-11-26 02:35:50,516 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 21:36:32] 2025-11-26 02:35:50,517 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 21:36:32] 2025-11-26 02:35:50,517 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 21:36:32] 2025-11-26 02:35:50,517 | INFO     | job 6895351009 has completed (purged errors)
[2025-11-25 21:36:32] 2025-11-26 02:35:50,517 | INFO     | overall cleanup function is called
[2025-11-25 21:36:32] 2025-11-26 02:35:51,532 | INFO     | --- collectZombieJob: --- 10, [928531]
[2025-11-25 21:36:32] 2025-11-26 02:35:51,533 | INFO     | zombie collector waiting for pid 928531
[2025-11-25 21:36:32] 2025-11-26 02:35:51,533 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 21:36:32] 2025-11-26 02:35:51,533 | INFO     | collected zombie processes
[2025-11-25 21:36:32] 2025-11-26 02:35:51,533 | INFO     | will attempt to kill all subprocesses of pid=928531
[2025-11-25 21:36:32] 2025-11-26 02:35:51,966 | INFO     | process IDs to be killed: [928531] (in reverse order)
[2025-11-25 21:36:32] 2025-11-26 02:35:52,088 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 21:36:32] 2025-11-26 02:35:52,089 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 21:36:32] 2025-11-26 02:35:52,103 | INFO     | did not find any defunct processes belonging to 928531
[2025-11-25 21:36:32] 2025-11-26 02:35:52,118 | INFO     | did not find any defunct processes belonging to 928531
[2025-11-25 21:36:32] 2025-11-26 02:35:52,120 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 21:36:32] 2025-11-26 02:35:52,120 | INFO     | ready for new job
[2025-11-25 21:36:32] 2025-11-26 02:35:52,120 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 21:36:32] 2025-11-26 02:35:52,126 | INFO     | ***************************************
[2025-11-25 21:36:32] 2025-11-26 02:35:52,126 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 21:36:32] 2025-11-26 02:35:52,126 | INFO     | ***************************************
[2025-11-25 21:36:32] 2025-11-26 02:35:52,126 | INFO     | 
[2025-11-25 21:36:32] 2025-11-26 02:35:52,128 | INFO     | architecture information:
[2025-11-25 21:36:32] 2025-11-26 02:35:52,128 | INFO     | executing command: cat /etc/os-release
[2025-11-25 21:36:32] 2025-11-26 02:35:52,144 | INFO     | cat /etc/os-release:
[2025-11-25 21:36:32] NAME="CentOS Linux"
[2025-11-25 21:36:32] VERSION="7 (Core)"
[2025-11-25 21:36:32] ID="centos"
[2025-11-25 21:36:32] ID_LIKE="rhel fedora"
[2025-11-25 21:36:32] VERSION_ID="7"
[2025-11-25 21:36:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 21:36:32] ANSI_COLOR="0;31"
[2025-11-25 21:36:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 21:36:32] HOME_URL="https://www.centos.org/"
[2025-11-25 21:36:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 21:36:32] 
[2025-11-25 21:36:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 21:36:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 21:36:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 21:36:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 21:36:32] 
[2025-11-25 21:36:32] 2025-11-26 02:35:52,144 | INFO     | ***************************************
[2025-11-25 21:36:32] 2025-11-26 02:35:52,647 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-25 21:36:32] 2025-11-26 02:35:52,664 | INFO     | sufficient remaining disk space (72442970112 B)
[2025-11-25 21:36:32] 2025-11-26 02:35:52,665 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 21:36:32] 2025-11-26 02:35:52,665 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 21:36:32] 2025-11-26 02:35:52,665 | INFO     | update_server=False
[2025-11-25 21:36:32] 2025-11-26 02:35:52,665 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 21:36:32] 2025-11-26 02:35:52,666 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:36:32] 2025-11-26 02:35:52,666 | INFO     | aborting loop
[2025-11-25 21:36:32] 2025-11-26 02:35:52,960 | INFO     | all job control threads have been joined
[2025-11-25 21:36:32] 2025-11-26 02:35:53,177 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 21:36:32] 2025-11-26 02:35:53,288 | INFO     | all payload control threads have been joined
[2025-11-25 21:36:32] 2025-11-26 02:35:53,537 | INFO     | all data control threads have been joined
[2025-11-25 21:36:32] 2025-11-26 02:35:53,671 | INFO     | [job] retrieve thread has finished
[2025-11-25 21:36:32] 2025-11-26 02:35:53,672 | INFO     | [job] job monitor thread has finished
[2025-11-25 21:36:32] 2025-11-26 02:35:53,680 | INFO     | [data] copytool_in thread has finished
[2025-11-25 21:36:32] 2025-11-26 02:35:53,745 | INFO     | [payload] failed_post thread has finished
[2025-11-25 21:36:32] 2025-11-26 02:35:53,801 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 21:36:32] 2025-11-26 02:35:53,967 | INFO     | [job] control thread has finished
[2025-11-25 21:36:32] 2025-11-26 02:35:54,065 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 21:36:32] 2025-11-26 02:35:54,294 | INFO     | [payload] control thread has finished
[2025-11-25 21:36:32] 2025-11-26 02:35:54,318 | INFO     | [job] validate thread has finished
[2025-11-25 21:36:32] 2025-11-26 02:35:54,543 | INFO     | [data] control thread has finished
[2025-11-25 21:36:32] 2025-11-26 02:35:54,977 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 21:36:32] 2025-11-26 02:35:55,013 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 21:36:32] 2025-11-26 02:35:55,069 | INFO     | [payload] validate_post thread has finished
[2025-11-25 21:36:32] 2025-11-26 02:35:55,117 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 21:36:32] 2025-11-26 02:35:55,189 | INFO     | [data] copytool_out thread has finished
[2025-11-25 21:36:32] 2025-11-26 02:35:55,505 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:36:32] 2025-11-26 02:35:56,510 | INFO     | [job] queue monitor thread has finished
[2025-11-25 21:36:32] 2025-11-26 02:35:59,124 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 21:36:32] 2025-11-26 02:35:59,575 [wrapper] supervise_pilot (15 min periods counter: 94)
[2025-11-25 21:36:32] 2025-11-26 02:36:23,955 | INFO     | PID=921136 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 21:36:32] 2025-11-26 02:36:23,955 | INFO     | .. there are 41 such processes running
[2025-11-25 21:36:32] 2025-11-26 02:36:23,956 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 21:36:32] 2025-11-26 02:36:23,956 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 21:36:32] 2025-11-26 02:36:23,956 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 21:36:32] 2025-11-26 02:36:25,357 | INFO     | [monitor] cgroup control has ended
[2025-11-25 21:36:32] 2025-11-26 02:36:27,129 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140119004002112)>', '<ExcThread(monitor, started 140118140647168)>']
[2025-11-25 21:36:32] 2025-11-26 02:36:27,985 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 21:36:32] 2025-11-26 02:36:27,986 | INFO     | [monitor] control thread has ended
[2025-11-25 21:36:32] 2025-11-26 02:36:32,155 | INFO     | all workflow threads have been joined
[2025-11-25 21:36:32] 2025-11-26 02:36:32,155 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 21:36:32] 2025-11-26 02:36:32,155 | INFO     | traces error code: 0
[2025-11-25 21:36:32] 2025-11-26 02:36:32,155 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 21:36:32] 2025-11-26 02:36:32,330 [wrapper] ==== pilot stdout END ====
[2025-11-25 21:36:32] 2025-11-26 02:36:32,333 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 21:36:32] 2025-11-26 02:36:32,338 [wrapper] pilotpid: 921136
[2025-11-25 21:36:32] 2025-11-26 02:36:32,341 [wrapper] Pilot exit status: 0
[2025-11-25 21:36:32] 2025-11-26 02:36:32,351 [wrapper] pandaids: 6895351009
[2025-11-25 21:36:32] 2025-11-26 02:36:32,439 [wrapper] cleanup supervisor_pilot 1303669 921137
[2025-11-25 21:36:32] 2025-11-26 02:36:32,443 [wrapper] Test setup, not cleaning
[2025-11-25 21:36:32] 2025-11-26 02:36:32,447 [wrapper] apfmon messages muted
[2025-11-25 21:36:32] 2025-11-26 02:36:32,449 [wrapper] ==== wrapper stdout END ====
[2025-11-25 21:36:32] 2025-11-26 02:36:32,452 [wrapper] ==== wrapper stderr END ====
[2025-11-25 21:36:32]  *** Error codes and diagnostics ***
[2025-11-25 21:36:32]     "exeErrorCode": 0,
[2025-11-25 21:36:32]     "exeErrorDiag": "",
[2025-11-25 21:36:32]     "pilotErrorCode": 0,
[2025-11-25 21:36:32]     "pilotErrorDiag": "",
[2025-11-25 21:36:32]  *** Listing of results directory ***
[2025-11-25 21:36:32] total 1332316
[2025-11-25 21:36:32] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 17:51 pilot3.tar.gz
[2025-11-25 21:36:32] -rwx------. 1 boincer umatlas     36292 Nov 22 17:54 runpilot2-wrapper.sh
[2025-11-25 21:36:32] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 17:54 queuedata.json
[2025-11-25 21:36:32] -rw-r--r--. 1 boincer umatlas       100 Nov 24 22:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 21:36:32] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 22:20 run_atlas
[2025-11-25 21:36:32] -rw-r--r--. 1 boincer umatlas       105 Nov 24 22:20 job.xml
[2025-11-25 21:36:32] -rw-r--r--. 2 boincer umatlas 409351747 Nov 24 22:20 EVNT.47483658._000533.pool.root.1
[2025-11-25 21:36:32] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 22:20 shared
[2025-11-25 21:36:32] -rw-r--r--. 2 boincer umatlas    590103 Nov 24 22:20 input.tar.gz
[2025-11-25 21:36:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 22:20 start_atlas.sh
[2025-11-25 21:36:32] -rw-r--r--. 1 boincer umatlas         0 Nov 24 22:20 boinc_lockfile
[2025-11-25 21:36:32] -rw-r--r--. 1 boincer umatlas      2784 Nov 24 22:20 pandaJob.out
[2025-11-25 21:36:32] -rw-------. 1 boincer umatlas        57 Nov 24 22:20 setup.sh.local
[2025-11-25 21:36:32] -rw-------. 1 boincer umatlas    991801 Nov 24 22:20 agis_schedconf.cvmfs.json
[2025-11-25 21:36:32] drwx------. 5 boincer umatlas      4096 Nov 24 22:21 pilot3
[2025-11-25 21:36:32] -rw-r--r--. 1 boincer umatlas       533 Nov 25 21:23 boinc_task_state.xml
[2025-11-25 21:36:32] -rw-r--r--. 1 boincer umatlas      6660 Nov 25 21:29 init_data.xml
[2025-11-25 21:36:32] -rw-------. 1 boincer umatlas 923265878 Nov 25 21:34 HITS.47556137._005286.pool.root.1
[2025-11-25 21:36:32] -rw-------. 1 boincer umatlas      1071 Nov 25 21:35 memory_monitor_summary.json
[2025-11-25 21:36:32] -rw-------. 1 boincer umatlas   1516240 Nov 25 21:35 agis_ddmendpoints.agis.ALL.json
[2025-11-25 21:36:32] -rw-------. 1 boincer umatlas   2476586 Nov 25 21:35 log.47556137._005286.job.log.tgz.1
[2025-11-25 21:36:32] -rw-------. 1 boincer umatlas      8628 Nov 25 21:35 heartbeat.json
[2025-11-25 21:36:32] -rw-------. 1 boincer umatlas        95 Nov 25 21:36 pilot_heartbeat.json
[2025-11-25 21:36:32] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 21:36 boinc_mmap_file
[2025-11-25 21:36:32] -rw-------. 1 boincer umatlas      4823 Nov 25 21:36 pilotlog.txt
[2025-11-25 21:36:32] -rw-------. 1 boincer umatlas  11396175 Nov 25 21:36 log.47556137._005286.job.log.1
[2025-11-25 21:36:32] -rw-------. 1 boincer umatlas       353 Nov 25 21:36 output.list
[2025-11-25 21:36:32] -rw-r--r--. 1 boincer umatlas        29 Nov 25 21:36 wrapper_checkpoint.txt
[2025-11-25 21:36:32] -rw-r--r--. 1 boincer umatlas       620 Nov 25 21:36 runtime_log
[2025-11-25 21:36:32] -rw-------. 1 boincer umatlas  13895680 Nov 25 21:36 result.tar.gz
[2025-11-25 21:36:32] -rw-r--r--. 1 boincer umatlas      9328 Nov 25 21:36 runtime_log.err
[2025-11-25 21:36:32] -rw-------. 1 boincer umatlas       658 Nov 25 21:36 iczNDmDgBh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmoLIKDm9a999m.diag
[2025-11-25 21:36:32] -rw-r--r--. 1 boincer umatlas     21318 Nov 25 21:36 stderr.txt
[2025-11-25 21:36:32] HITS file was successfully produced:
[2025-11-25 21:36:32] -rw-------. 1 boincer umatlas 923265878 Nov 25 21:34 shared/HITS.pool.root.1
[2025-11-25 21:36:32]  *** Contents of shared directory: ***
[2025-11-25 21:36:32] total 1315564
[2025-11-25 21:36:32] -rw-r--r--. 2 boincer umatlas 409351747 Nov 24 22:20 ATLAS.root_0
[2025-11-25 21:36:32] -rw-r--r--. 2 boincer umatlas    590103 Nov 24 22:20 input.tar.gz
[2025-11-25 21:36:32] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 22:20 start_atlas.sh
[2025-11-25 21:36:32] -rw-------. 1 boincer umatlas 923265878 Nov 25 21:34 HITS.pool.root.1
[2025-11-25 21:36:32] -rw-------. 1 boincer umatlas  13895680 Nov 25 21:36 result.tar.gz
21:36:54 (916436): run_atlas exited; CPU time 308287.708861
21:36:54 (916436): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN