Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:47:53 (1711358): wrapper (7.7.26015): starting
20:47:53 (1711358): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 20:47:53] Arguments: --nthreads 9
[2025-11-24 20:47:53] Threads: 9
[2025-11-24 20:47:53] Checking for CVMFS
[2025-11-24 20:47:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 20:47:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 20:47:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 20:47:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 20:47:54] 2.13.3.0 14259 26532 337484 153265 3 190 19713028 32935937 26850 16776704 0 157666857 99.789 84620009 34045 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 20:47:54] CVMFS is ok
[2025-11-24 20:47:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 20:47:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 20:47:54] Further information can be found at the LHC@home message board.
[2025-11-24 20:47:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 20:47:54] Checking for apptainer binary...
[2025-11-24 20:47:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 20:47:54] Running /usr/bin/apptainer --version
[2025-11-24 20:47:54] apptainer version 1.4.4-1.el9
[2025-11-24 20:47:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 20:47:54] c-4-36.aglt2.org
[2025-11-24 20:47:54] apptainer works
[2025-11-24 20:47:54] Set ATHENA_PROC_NUMBER=9
[2025-11-24 20:47:54] Set ATHENA_CORE_NUMBER=9
[2025-11-24 20:47:55] Starting ATLAS job with PandaID=6895356001
[2025-11-24 20:47:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:04:09]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:04:09] 2025-11-25 17:03:32,578 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 12:04:09] 2025-11-25 17:03:32,585 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.017175
[2025-11-25 12:04:09] 2025-11-25 17:03:32,592 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895356001/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 12:04:09] 2025-11-25 17:03:32,592 | INFO     | extracted standard info from prmon json
[2025-11-25 12:04:09] 2025-11-25 17:03:32,593 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 12:04:09] 2025-11-25 17:03:32,593 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 12:04:09] 2025-11-25 17:03:32,611 | INFO     | fitting pss+swap vs Time
[2025-11-25 12:04:09] 2025-11-25 17:03:32,612 | INFO     | sum of square deviations: 225294160180.7028
[2025-11-25 12:04:09] 2025-11-25 17:03:32,634 | INFO     | sum of deviations: 2435449409001.2344
[2025-11-25 12:04:09] 2025-11-25 17:03:32,635 | INFO     | mean x: 1764062760.2169077
[2025-11-25 12:04:09] 2025-11-25 17:03:32,636 | INFO     | mean y: 3066615.537263626
[2025-11-25 12:04:09] 2025-11-25 17:03:32,636 | INFO     | intersect: -19066604801.4467
[2025-11-25 12:04:09] 2025-11-25 17:03:32,637 | INFO     | chi2: 6.520056116651398
[2025-11-25 12:04:09] 2025-11-25 17:03:32,638 | INFO     | sum of square deviations: 221556219100.75748
[2025-11-25 12:04:09] 2025-11-25 17:03:32,659 | INFO     | sum of deviations: 2718969022544.7207
[2025-11-25 12:04:09] 2025-11-25 17:03:32,659 | INFO     | mean x: 1764062607.7237136
[2025-11-25 12:04:09] 2025-11-25 17:03:32,659 | INFO     | mean y: 3078178.711409396
[2025-11-25 12:04:09] 2025-11-25 17:03:32,660 | INFO     | intersect: -21645745779.820557
[2025-11-25 12:04:09] 2025-11-25 17:03:32,661 | INFO     | chi2: 3.9342704212466724
[2025-11-25 12:04:09] 2025-11-25 17:03:32,661 | INFO     | current chi2=3.9342704212466724 (change=39.65894846826481 %)
[2025-11-25 12:04:09] 2025-11-25 17:03:32,662 | INFO     | sum of square deviations: 217859751496.64523
[2025-11-25 12:04:09] 2025-11-25 17:03:32,683 | INFO     | sum of deviations: 2785345646034.9795
[2025-11-25 12:04:09] 2025-11-25 17:03:32,683 | INFO     | mean x: 1764062455.2283463
[2025-11-25 12:04:09] 2025-11-25 17:03:32,684 | INFO     | mean y: 3080907.3104611924
[2025-11-25 12:04:09] 2025-11-25 17:03:32,684 | INFO     | intersect: -22550528216.21648
[2025-11-25 12:04:09] 2025-11-25 17:03:32,685 | INFO     | chi2: 3.5182665211647937
[2025-11-25 12:04:09] 2025-11-25 17:03:32,685 | INFO     | current chi2=3.5182665211647937 (change=10.573851198313344 %)
[2025-11-25 12:04:09] 2025-11-25 17:03:32,685 | INFO     | right removable region: 888
[2025-11-25 12:04:09] 2025-11-25 17:03:32,687 | INFO     | sum of square deviations: 221555551760.7573
[2025-11-25 12:04:09] 2025-11-25 17:03:32,707 | INFO     | sum of deviations: 2101515221917.21
[2025-11-25 12:04:09] 2025-11-25 17:03:32,708 | INFO     | mean x: 1764062912.7237136
[2025-11-25 12:04:09] 2025-11-25 17:03:32,708 | INFO     | mean y: 3080229.008948546
[2025-11-25 12:04:09] 2025-11-25 17:03:32,708 | INFO     | intersect: -16729540705.318401
[2025-11-25 12:04:09] 2025-11-25 17:03:32,709 | INFO     | chi2: 3.3697914496504993
[2025-11-25 12:04:09] 2025-11-25 17:03:32,709 | INFO     | current chi2=3.3697914496504993 (change=48.31652689239164 %)
[2025-11-25 12:04:09] 2025-11-25 17:03:32,711 | INFO     | sum of square deviations: 217858743413.5543
[2025-11-25 12:04:09] 2025-11-25 17:03:32,732 | INFO     | sum of deviations: 2004090357193.2888
[2025-11-25 12:04:09] 2025-11-25 17:03:32,732 | INFO     | mean x: 1764063065.2260966
[2025-11-25 12:04:09] 2025-11-25 17:03:32,732 | INFO     | mean y: 3084242.7547806525
[2025-11-25 12:04:09] 2025-11-25 17:03:32,732 | INFO     | intersect: -16224594863.01069
[2025-11-25 12:04:09] 2025-11-25 17:03:32,734 | INFO     | chi2: 3.1502375878716142
[2025-11-25 12:04:09] 2025-11-25 17:03:32,734 | INFO     | current chi2=3.1502375878716142 (change=6.515354586755101 %)
[2025-11-25 12:04:09] 2025-11-25 17:03:32,734 | INFO     | left removable region: 20
[2025-11-25 12:04:09] 2025-11-25 17:03:32,735 | INFO     | sum of square deviations: 202782066419.15652
[2025-11-25 12:04:09] 2025-11-25 17:03:32,754 | INFO     | sum of deviations: 2243458974872.427
[2025-11-25 12:04:09] 2025-11-25 17:03:32,755 | INFO     | mean x: 1764063034.7396314
[2025-11-25 12:04:09] 2025-11-25 17:03:32,755 | INFO     | mean y: 3103160.714285714
[2025-11-25 12:04:09] 2025-11-25 17:03:32,755 | INFO     | intersect: -19513430610.801945
[2025-11-25 12:04:09] 2025-11-25 17:03:32,756 | INFO     | chi2: 0.1025956863386137
[2025-11-25 12:04:09] 2025-11-25 17:03:32,757 | INFO     | current memory leak: 11.06 B/s (using 868 data points, chi2=0.10)
[2025-11-25 12:04:09] 2025-11-25 17:03:32,758 | INFO     | could have reported an average CPU frequency of 2600 MHz (33 samples)
[2025-11-25 12:04:09] 2025-11-25 17:03:32,758 | INFO     | ..............................
[2025-11-25 12:04:09] 2025-11-25 17:03:32,758 | INFO     | . Timing measurements:
[2025-11-25 12:04:09] 2025-11-25 17:03:32,758 | INFO     | . get job = 0 s
[2025-11-25 12:04:09] 2025-11-25 17:03:32,758 | INFO     | . initial setup = 4 s
[2025-11-25 12:04:09] 2025-11-25 17:03:32,758 | INFO     | . payload setup = 13 s
[2025-11-25 12:04:09] 2025-11-25 17:03:32,759 | INFO     | . stage-in = 0 s
[2025-11-25 12:04:09] 2025-11-25 17:03:32,759 | INFO     | . payload execution = 54842 s
[2025-11-25 12:04:09] 2025-11-25 17:03:32,759 | INFO     | . stage-out = 3 s
[2025-11-25 12:04:09] 2025-11-25 17:03:32,759 | INFO     | . log creation = 0 s
[2025-11-25 12:04:09] 2025-11-25 17:03:32,759 | INFO     | ..............................
[2025-11-25 12:04:09] 2025-11-25 17:03:32,872 | INFO     | 
[2025-11-25 12:04:09] 2025-11-25 17:03:32,873 | INFO     | job summary report
[2025-11-25 12:04:09] 2025-11-25 17:03:32,873 | INFO     | --------------------------------------------------
[2025-11-25 12:04:09] 2025-11-25 17:03:32,873 | INFO     | PanDA job id: 6895356001
[2025-11-25 12:04:09] 2025-11-25 17:03:32,873 | INFO     | task id: 47556137
[2025-11-25 12:04:09] 2025-11-25 17:03:32,873 | INFO     | errors: (none)
[2025-11-25 12:04:09] 2025-11-25 17:03:32,873 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 12:04:09] 2025-11-25 17:03:32,873 | INFO     | pilot state: finished 
[2025-11-25 12:04:09] 2025-11-25 17:03:32,873 | INFO     | transexitcode: 0
[2025-11-25 12:04:09] 2025-11-25 17:03:32,873 | INFO     | exeerrorcode: 0
[2025-11-25 12:04:09] 2025-11-25 17:03:32,874 | INFO     | exeerrordiag: 
[2025-11-25 12:04:09] 2025-11-25 17:03:32,874 | INFO     | exitcode: 0
[2025-11-25 12:04:09] 2025-11-25 17:03:32,874 | INFO     | exitmsg: OK
[2025-11-25 12:04:09] 2025-11-25 17:03:32,874 | INFO     | cpuconsumptiontime: 305289 s
[2025-11-25 12:04:09] 2025-11-25 17:03:32,874 | INFO     | nevents: 1000
[2025-11-25 12:04:09] 2025-11-25 17:03:32,874 | INFO     | neventsw: 0
[2025-11-25 12:04:09] 2025-11-25 17:03:32,874 | INFO     | pid: 1731612
[2025-11-25 12:04:09] 2025-11-25 17:03:32,874 | INFO     | pgrp: 1731612
[2025-11-25 12:04:09] 2025-11-25 17:03:32,875 | INFO     | corecount: 9
[2025-11-25 12:04:09] 2025-11-25 17:03:32,875 | INFO     | event service: False
[2025-11-25 12:04:09] 2025-11-25 17:03:32,875 | INFO     | sizes: {0: 2284088, 1: 2284287, 2: 2284287, 12: 2284315, 15: 2284605, 23: 2284633, 54858: 2336117, 54863: 2345116, 54864: 2345172, 54871: 2345482}
[2025-11-25 12:04:09] 2025-11-25 17:03:32,875 | INFO     | --------------------------------------------------
[2025-11-25 12:04:09] 2025-11-25 17:03:32,875 | INFO     | 
[2025-11-25 12:04:09] 2025-11-25 17:03:32,875 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 12:04:09] 2025-11-25 17:03:32,899 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 12:04:09] 2025-11-25 17:03:32,899 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 12:04:09] 2025-11-25 17:03:32,899 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 12:04:09] 2025-11-25 17:03:32,900 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 12:04:09] 2025-11-25 17:03:32,900 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 12:04:09] 2025-11-25 17:03:32,900 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 12:04:09] 2025-11-25 17:03:32,900 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 12:04:09] 2025-11-25 17:03:32,900 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 12:04:09] 2025-11-25 17:03:32,900 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 12:04:09] 2025-11-25 17:03:32,900 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 12:04:09] 2025-11-25 17:03:32,900 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 12:04:09] 2025-11-25 17:03:32,901 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 12:04:09] 2025-11-25 17:03:32,901 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 12:04:09] 2025-11-25 17:03:32,901 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 12:04:09] 2025-11-25 17:03:32,901 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 12:04:09] 2025-11-25 17:03:32,901 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 12:04:09] 2025-11-25 17:03:32,901 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 12:04:09] 2025-11-25 17:03:32,901 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 12:04:09] 2025-11-25 17:03:32,901 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 12:04:09] 2025-11-25 17:03:32,901 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 12:04:09] 2025-11-25 17:03:32,902 | INFO     | job 6895356001 has completed (purged errors)
[2025-11-25 12:04:09] 2025-11-25 17:03:32,902 | INFO     | overall cleanup function is called
[2025-11-25 12:04:09] 2025-11-25 17:03:33,922 | INFO     | --- collectZombieJob: --- 10, [1731612]
[2025-11-25 12:04:09] 2025-11-25 17:03:33,923 | INFO     | zombie collector waiting for pid 1731612
[2025-11-25 12:04:09] 2025-11-25 17:03:33,923 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 12:04:09] 2025-11-25 17:03:33,923 | INFO     | collected zombie processes
[2025-11-25 12:04:09] 2025-11-25 17:03:33,923 | INFO     | will attempt to kill all subprocesses of pid=1731612
[2025-11-25 12:04:09] 2025-11-25 17:03:34,461 | INFO     | process IDs to be killed: [1731612] (in reverse order)
[2025-11-25 12:04:09] 2025-11-25 17:03:34,598 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 12:04:09] 2025-11-25 17:03:34,598 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 12:04:09] 2025-11-25 17:03:34,614 | INFO     | did not find any defunct processes belonging to 1731612
[2025-11-25 12:04:09] 2025-11-25 17:03:34,629 | INFO     | did not find any defunct processes belonging to 1731612
[2025-11-25 12:04:09] 2025-11-25 17:03:34,630 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 12:04:09] 2025-11-25 17:03:34,631 | INFO     | ready for new job
[2025-11-25 12:04:09] 2025-11-25 17:03:34,631 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 12:04:09] 2025-11-25 17:03:34,635 | INFO     | ***************************************
[2025-11-25 12:04:09] 2025-11-25 17:03:34,635 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 12:04:09] 2025-11-25 17:03:34,635 | INFO     | ***************************************
[2025-11-25 12:04:09] 2025-11-25 17:03:34,635 | INFO     | 
[2025-11-25 12:04:09] 2025-11-25 17:03:34,637 | INFO     | architecture information:
[2025-11-25 12:04:09] 2025-11-25 17:03:34,638 | INFO     | executing command: cat /etc/os-release
[2025-11-25 12:04:09] 2025-11-25 17:03:34,657 | INFO     | cat /etc/os-release:
[2025-11-25 12:04:09] NAME="CentOS Linux"
[2025-11-25 12:04:09] VERSION="7 (Core)"
[2025-11-25 12:04:09] ID="centos"
[2025-11-25 12:04:09] ID_LIKE="rhel fedora"
[2025-11-25 12:04:09] VERSION_ID="7"
[2025-11-25 12:04:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 12:04:09] ANSI_COLOR="0;31"
[2025-11-25 12:04:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 12:04:09] HOME_URL="https://www.centos.org/"
[2025-11-25 12:04:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 12:04:09] 
[2025-11-25 12:04:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 12:04:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 12:04:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 12:04:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 12:04:09] 
[2025-11-25 12:04:09] 2025-11-25 17:03:34,658 | INFO     | ***************************************
[2025-11-25 12:04:09] 2025-11-25 17:03:35,168 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 12:04:09] 2025-11-25 17:03:35,225 | INFO     | sufficient remaining disk space (72303509504 B)
[2025-11-25 12:04:09] 2025-11-25 17:03:35,226 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 12:04:09] 2025-11-25 17:03:35,226 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:04:09] 2025-11-25 17:03:35,226 | INFO     | update_server=False
[2025-11-25 12:04:09] 2025-11-25 17:03:35,226 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:04:09] 2025-11-25 17:03:35,492 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 12:04:09] 2025-11-25 17:03:35,493 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 12:04:09] 2025-11-25 17:03:35,493 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:04:09] 2025-11-25 17:03:35,493 | INFO     | will abort loop
[2025-11-25 12:04:09] 2025-11-25 17:03:35,640 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:04:09] 2025-11-25 17:03:35,854 | INFO     | all data control threads have been joined
[2025-11-25 12:04:09] 2025-11-25 17:03:35,955 | INFO     | all payload control threads have been joined
[2025-11-25 12:04:09] 2025-11-25 17:03:36,232 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:04:09] 2025-11-25 17:03:36,434 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:04:09] 2025-11-25 17:03:36,505 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:04:09] 2025-11-25 17:03:36,505 | INFO     | [job] validate thread has finished
[2025-11-25 12:04:09] 2025-11-25 17:03:36,513 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:04:09] 2025-11-25 17:03:36,542 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:04:09] 2025-11-25 17:03:36,620 | INFO     | all job control threads have been joined
[2025-11-25 12:04:09] 2025-11-25 17:03:36,628 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:04:09] 2025-11-25 17:03:36,631 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:04:09] 2025-11-25 17:03:36,859 | INFO     | [data] control thread has finished
[2025-11-25 12:04:09] 2025-11-25 17:03:36,960 | INFO     | [payload] control thread has finished
[2025-11-25 12:04:09] 2025-11-25 17:03:37,118 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:04:09] 2025-11-25 17:03:37,308 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:04:09] 2025-11-25 17:03:37,625 | INFO     | [job] control thread has finished
[2025-11-25 12:04:09] 2025-11-25 17:03:37,647 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:04:09] 2025-11-25 17:03:37,756 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:04:09] 2025-11-25 17:03:37,899 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:04:09] 2025-11-25 17:03:38,904 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:04:09] 2025-11-25 17:03:40,649 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:04:09] 2025-11-25 17:04:02,791 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:04:09] 2025-11-25 17:04:04,005 | INFO     | 54911s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 12:04:09] 2025-11-25 17:04:04,400 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139862983325504)>', '<ExcThread(monitor, started 139862481020672)>']
[2025-11-25 12:04:09] 2025-11-25 17:04:05,514 | INFO     | PID=1718405 has CPU usage=9.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 12:04:09] 2025-11-25 17:04:05,514 | INFO     | .. there are 42 such processes running
[2025-11-25 12:04:09] 2025-11-25 17:04:05,515 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:04:09] 2025-11-25 17:04:05,516 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:04:09] 2025-11-25 17:04:05,516 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:04:09] 2025-11-25 17:04:05,516 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:04:09] 2025-11-25 17:04:05,516 | INFO     | [monitor] control thread has ended
[2025-11-25 12:04:09] 2025-11-25 17:04:09,426 | INFO     | all workflow threads have been joined
[2025-11-25 12:04:09] 2025-11-25 17:04:09,427 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:04:09] 2025-11-25 17:04:09,427 | INFO     | traces error code: 0
[2025-11-25 12:04:09] 2025-11-25 17:04:09,427 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:04:09] 2025-11-25 17:04:09,579 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:04:09] 2025-11-25 17:04:09,582 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:04:09] 2025-11-25 17:04:09,584 [wrapper] pilotpid: 1718405
[2025-11-25 12:04:09] 2025-11-25 17:04:09,587 [wrapper] Pilot exit status: 0
[2025-11-25 12:04:09] 2025-11-25 17:04:09,598 [wrapper] pandaids: 6895356001
[2025-11-25 12:04:09] 2025-11-25 17:04:09,677 [wrapper] cleanup supervisor_pilot  326099 1718406
[2025-11-25 12:04:09] 2025-11-25 17:04:09,685 [wrapper] Test setup, not cleaning
[2025-11-25 12:04:09] 2025-11-25 17:04:09,689 [wrapper] apfmon messages muted
[2025-11-25 12:04:09] 2025-11-25 17:04:09,692 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:04:09] 2025-11-25 17:04:09,694 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:04:09]  *** Error codes and diagnostics ***
[2025-11-25 12:04:09]     "exeErrorCode": 0,
[2025-11-25 12:04:09]     "exeErrorDiag": "",
[2025-11-25 12:04:09]     "pilotErrorCode": 0,
[2025-11-25 12:04:09]     "pilotErrorDiag": "",
[2025-11-25 12:04:09]  *** Listing of results directory ***
[2025-11-25 12:04:09] total 1318512
[2025-11-25 12:04:09] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 04:19 pilot3.tar.gz
[2025-11-25 12:04:09] -rwx------. 1 boincer umatlas     36292 Nov 23 04:55 runpilot2-wrapper.sh
[2025-11-25 12:04:09] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 04:55 queuedata.json
[2025-11-25 12:04:09] -rw-r--r--. 1 boincer umatlas       100 Nov 24 20:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:04:09] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 20:47 run_atlas
[2025-11-25 12:04:09] -rw-r--r--. 1 boincer umatlas       105 Nov 24 20:47 job.xml
[2025-11-25 12:04:09] -rw-r--r--. 2 boincer umatlas 411483978 Nov 24 20:47 EVNT.47483658._000683.pool.root.1
[2025-11-25 12:04:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 20:47 start_atlas.sh
[2025-11-25 12:04:09] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 20:47 shared
[2025-11-25 12:04:09] -rw-r--r--. 2 boincer umatlas    590093 Nov 24 20:47 input.tar.gz
[2025-11-25 12:04:09] -rw-r--r--. 1 boincer umatlas         0 Nov 24 20:47 boinc_lockfile
[2025-11-25 12:04:09] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 20:47 pandaJob.out
[2025-11-25 12:04:09] -rw-------. 1 boincer umatlas        57 Nov 24 20:47 setup.sh.local
[2025-11-25 12:04:09] -rw-------. 1 boincer umatlas    991801 Nov 24 20:48 agis_schedconf.cvmfs.json
[2025-11-25 12:04:09] drwx------. 5 boincer umatlas      4096 Nov 24 20:48 pilot3
[2025-11-25 12:04:09] -rw-r--r--. 1 boincer umatlas       533 Nov 25 11:53 boinc_task_state.xml
[2025-11-25 12:04:09] -rw-r--r--. 1 boincer umatlas      6661 Nov 25 12:02 init_data.xml
[2025-11-25 12:04:09] -rw-------. 1 boincer umatlas 915954200 Nov 25 12:02 HITS.47556137._006784.pool.root.1
[2025-11-25 12:04:09] -rw-------. 1 boincer umatlas      1058 Nov 25 12:03 memory_monitor_summary.json
[2025-11-25 12:04:09] -rw-------. 1 boincer umatlas   1516240 Nov 25 12:03 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:04:09] -rw-------. 1 boincer umatlas   2195138 Nov 25 12:03 log.47556137._006784.job.log.tgz.1
[2025-11-25 12:04:09] -rw-------. 1 boincer umatlas      8629 Nov 25 12:03 heartbeat.json
[2025-11-25 12:04:09] -rw-------. 1 boincer umatlas        95 Nov 25 12:04 pilot_heartbeat.json
[2025-11-25 12:04:09] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 12:04 boinc_mmap_file
[2025-11-25 12:04:09] -rw-r--r--. 1 boincer umatlas        29 Nov 25 12:04 wrapper_checkpoint.txt
[2025-11-25 12:04:09] -rw-------. 1 boincer umatlas      5126 Nov 25 12:04 pilotlog.txt
[2025-11-25 12:04:09] -rw-------. 1 boincer umatlas   7201860 Nov 25 12:04 log.47556137._006784.job.log.1
[2025-11-25 12:04:09] -rw-------. 1 boincer umatlas       353 Nov 25 12:04 output.list
[2025-11-25 12:04:09] -rw-r--r--. 1 boincer umatlas       620 Nov 25 12:04 runtime_log
[2025-11-25 12:04:09] -rw-------. 1 boincer umatlas   9420800 Nov 25 12:04 result.tar.gz
[2025-11-25 12:04:09] -rw-r--r--. 1 boincer umatlas      9333 Nov 25 12:04 runtime_log.err
[2025-11-25 12:04:09] -rw-------. 1 boincer umatlas       658 Nov 25 12:04 M53LDm3zLh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0UIKDmfQv5Lm.diag
[2025-11-25 12:04:09] -rw-r--r--. 1 boincer umatlas     21354 Nov 25 12:04 stderr.txt
[2025-11-25 12:04:09] HITS file was successfully produced:
[2025-11-25 12:04:09] -rw-------. 1 boincer umatlas 915954200 Nov 25 12:02 shared/HITS.pool.root.1
[2025-11-25 12:04:09]  *** Contents of shared directory: ***
[2025-11-25 12:04:09] total 1306132
[2025-11-25 12:04:09] -rw-r--r--. 2 boincer umatlas 411483978 Nov 24 20:47 ATLAS.root_0
[2025-11-25 12:04:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 20:47 start_atlas.sh
[2025-11-25 12:04:09] -rw-r--r--. 2 boincer umatlas    590093 Nov 24 20:47 input.tar.gz
[2025-11-25 12:04:09] -rw-------. 1 boincer umatlas 915954200 Nov 25 12:02 HITS.pool.root.1
[2025-11-25 12:04:09] -rw-------. 1 boincer umatlas   9420800 Nov 25 12:04 result.tar.gz
12:04:11 (1711358): run_atlas exited; CPU time 307442.651696
12:04:11 (1711358): called boinc_finish(0)

</stderr_txt>
]]>

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