Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:51:55 (944226): wrapper (7.7.26015): starting
12:51:55 (944226): wrapper: running run_atlas (--nthreads 10)
[2025-11-24 12:51:55] Arguments: --nthreads 10
[2025-11-24 12:51:55] Threads: 10
[2025-11-24 12:51:55] Checking for CVMFS
[2025-11-24 12:51:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 12:51:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 12:51:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 12:51:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 12:51:57] 2.13.3.0 9158 27449 316952 153254 1 274 18053212 32935936 27365 16776704 0 162112836 99.791 89471172 33947 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 12:51:57] CVMFS is ok
[2025-11-24 12:51:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 12:51:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 12:51:57] Further information can be found at the LHC@home message board.
[2025-11-24 12:51:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 12:51:57] Checking for apptainer binary...
[2025-11-24 12:51:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 12:51:57] Running /usr/bin/apptainer --version
[2025-11-24 12:51:57] apptainer version 1.4.4-1.el9
[2025-11-24 12:51:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 12:51:57] c-8-16.aglt2.org
[2025-11-24 12:51:57] apptainer works
[2025-11-24 12:51:58] Set ATHENA_PROC_NUMBER=10
[2025-11-24 12:51:58] Set ATHENA_CORE_NUMBER=10
[2025-11-24 12:51:58] Starting ATLAS job with PandaID=6895338454
[2025-11-24 12:51:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:12:25 (998750): wrapper (7.7.26015): starting
13:12:25 (998750): wrapper: running run_atlas (--nthreads 10)
[2025-11-24 13:12:25] Arguments: --nthreads 10
[2025-11-24 13:12:25] Threads: 10
[2025-11-24 13:12:25] This job has been restarted, cleaning up previous attempt
[2025-11-24 13:12:25] Checking for CVMFS
[2025-11-24 13:12:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 13:12:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 13:12:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 13:12:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 13:12:26] 2.13.3.0 9158 27469 321428 153254 1 442 18088534 32935936 23670 16776704 0 162191084 99.791 89471353 33947 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 13:12:26] CVMFS is ok
[2025-11-24 13:12:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 13:12:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 13:12:26] Further information can be found at the LHC@home message board.
[2025-11-24 13:12:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 13:12:26] Checking for apptainer binary...
[2025-11-24 13:12:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 13:12:26] Running /usr/bin/apptainer --version
[2025-11-24 13:12:26] apptainer version 1.4.4-1.el9
[2025-11-24 13:12:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 13:12:26] c-8-16.aglt2.org
[2025-11-24 13:12:26] apptainer works
[2025-11-24 13:12:26] Set ATHENA_PROC_NUMBER=10
[2025-11-24 13:12:26] Set ATHENA_CORE_NUMBER=10
[2025-11-24 13:12:26] Starting ATLAS job with PandaID=6895338454
[2025-11-24 13:12:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:04:05]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:04:05] 2025-11-25 17:03:01,131 | INFO     | monitor loop #5508: job 0:6895338454 is in state 'finished'
[2025-11-25 12:04:05] 2025-11-25 17:03:01,132 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:04:05] 2025-11-25 17:03:01,346 | INFO     | time since job start (82226s) is within the limit (172800.0s)
[2025-11-25 12:04:05] 2025-11-25 17:03:01,470 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 12:04:05] 2025-11-25 17:03:01,476 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1390249999995
[2025-11-25 12:04:05] 2025-11-25 17:03:01,483 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895338454/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 12:04:05] 2025-11-25 17:03:01,484 | INFO     | extracted standard info from prmon json
[2025-11-25 12:04:05] 2025-11-25 17:03:01,484 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 12:04:05] 2025-11-25 17:03:01,484 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 12:04:05] 2025-11-25 17:03:01,507 | INFO     | fitting pss+swap vs Time
[2025-11-25 12:04:05] 2025-11-25 17:03:01,509 | INFO     | sum of square deviations: 759526920955.6575
[2025-11-25 12:04:05] 2025-11-25 17:03:01,552 | INFO     | sum of deviations: 4149767083178.7373
[2025-11-25 12:04:05] 2025-11-25 17:03:01,552 | INFO     | mean x: 1764049064.65727
[2025-11-25 12:04:05] 2025-11-25 17:03:01,552 | INFO     | mean y: 3264807.5838278932
[2025-11-25 12:04:05] 2025-11-25 17:03:01,552 | INFO     | intersect: -9634830353.567617
[2025-11-25 12:04:05] 2025-11-25 17:03:01,554 | INFO     | chi2: 8.640472542349297
[2025-11-25 12:04:05] 2025-11-25 17:03:01,556 | INFO     | sum of square deviations: 751106903983.9369
[2025-11-25 12:04:05] 2025-11-25 17:03:01,598 | INFO     | sum of deviations: 4686598779099.614
[2025-11-25 12:04:05] 2025-11-25 17:03:01,598 | INFO     | mean x: 1764048912.1615787
[2025-11-25 12:04:05] 2025-11-25 17:03:01,598 | INFO     | mean y: 3274530.0156366345
[2025-11-25 12:04:05] 2025-11-25 17:03:01,599 | INFO     | intersect: -11003666604.671715
[2025-11-25 12:04:05] 2025-11-25 17:03:01,600 | INFO     | chi2: 5.1867273759821995
[2025-11-25 12:04:05] 2025-11-25 17:03:01,600 | INFO     | current chi2=5.1867273759821995 (change=39.971716239353306 %)
[2025-11-25 12:04:05] 2025-11-25 17:03:01,602 | INFO     | sum of square deviations: 742749353299.6654
[2025-11-25 12:04:05] 2025-11-25 17:03:01,660 | INFO     | sum of deviations: 5036268577213.881
[2025-11-25 12:04:05] 2025-11-25 17:03:01,660 | INFO     | mean x: 1764048759.6659193
[2025-11-25 12:04:05] 2025-11-25 17:03:01,660 | INFO     | mean y: 3280907.2189835575
[2025-11-25 12:04:05] 2025-11-25 17:03:01,660 | INFO     | intersect: -11957986103.664852
[2025-11-25 12:04:05] 2025-11-25 17:03:01,662 | INFO     | chi2: 3.503992367615133
[2025-11-25 12:04:05] 2025-11-25 17:03:01,662 | INFO     | current chi2=3.503992367615133 (change=32.44309728248268 %)
[2025-11-25 12:04:05] 2025-11-25 17:03:01,664 | INFO     | sum of square deviations: 734454036340.3436
[2025-11-25 12:04:05] 2025-11-25 17:03:01,707 | INFO     | sum of deviations: 5250413719343.215
[2025-11-25 12:04:05] 2025-11-25 17:03:01,707 | INFO     | mean x: 1764048607.1702926
[2025-11-25 12:04:05] 2025-11-25 17:03:01,708 | INFO     | mean y: 3284842.853713428
[2025-11-25 12:04:05] 2025-11-25 17:03:01,708 | INFO     | intersect: -12607422635.623837
[2025-11-25 12:04:05] 2025-11-25 17:03:01,710 | INFO     | chi2: 2.788029017866655
[2025-11-25 12:04:05] 2025-11-25 17:03:01,710 | INFO     | current chi2=2.788029017866655 (change=20.432788506208215 %)
[2025-11-25 12:04:05] 2025-11-25 17:03:01,710 | INFO     | right removable region: 1332
[2025-11-25 12:04:05] 2025-11-25 17:03:01,712 | INFO     | sum of square deviations: 751106116476.5807
[2025-11-25 12:04:05] 2025-11-25 17:03:01,757 | INFO     | sum of deviations: 3763388648463.442
[2025-11-25 12:04:05] 2025-11-25 17:03:01,758 | INFO     | mean x: 1764049217.1600893
[2025-11-25 12:04:05] 2025-11-25 17:03:01,758 | INFO     | mean y: 3271797.672375279
[2025-11-25 12:04:05] 2025-11-25 17:03:01,758 | INFO     | intersect: -8835429756.68795
[2025-11-25 12:04:05] 2025-11-25 17:03:01,760 | INFO     | chi2: 6.6968391839008135
[2025-11-25 12:04:05] 2025-11-25 17:03:01,760 | INFO     | current chi2=6.6968391839008135 (change=22.494526183865638 %)
[2025-11-25 12:04:05] 2025-11-25 17:03:01,760 | INFO     | left removable region: 10
[2025-11-25 12:04:05] 2025-11-25 17:03:01,762 | INFO     | sum of square deviations: 716421000912.486
[2025-11-25 12:04:05] 2025-11-25 17:03:01,805 | INFO     | sum of deviations: 4726544064809.157
[2025-11-25 12:04:05] 2025-11-25 17:03:01,805 | INFO     | mean x: 1764048881.6739788
[2025-11-25 12:04:05] 2025-11-25 17:03:01,805 | INFO     | mean y: 3295398.9841149775
[2025-11-25 12:04:05] 2025-11-25 17:03:01,806 | INFO     | intersect: -11634910015.276043
[2025-11-25 12:04:05] 2025-11-25 17:03:01,807 | INFO     | chi2: 0.6199269018498568
[2025-11-25 12:04:05] 2025-11-25 17:03:01,808 | INFO     | current memory leak: 6.60 B/s (using 1322 data points, chi2=0.62)
[2025-11-25 12:04:05] 2025-11-25 17:03:01,809 | INFO     | could have reported an average CPU frequency of 2600 MHz (49 samples)
[2025-11-25 12:04:05] 2025-11-25 17:03:01,809 | INFO     | ..............................
[2025-11-25 12:04:05] 2025-11-25 17:03:01,809 | INFO     | . Timing measurements:
[2025-11-25 12:04:05] 2025-11-25 17:03:01,809 | INFO     | . get job = 0 s
[2025-11-25 12:04:05] 2025-11-25 17:03:01,810 | INFO     | . initial setup = 1 s
[2025-11-25 12:04:05] 2025-11-25 17:03:01,810 | INFO     | . payload setup = 5 s
[2025-11-25 12:04:05] 2025-11-25 17:03:01,810 | INFO     | . stage-in = 0 s
[2025-11-25 12:04:05] 2025-11-25 17:03:01,810 | INFO     | . payload execution = 82190 s
[2025-11-25 12:04:05] 2025-11-25 17:03:01,810 | INFO     | . stage-out = 4 s
[2025-11-25 12:04:05] 2025-11-25 17:03:01,810 | INFO     | . log creation = 1 s
[2025-11-25 12:04:05] 2025-11-25 17:03:01,810 | INFO     | ..............................
[2025-11-25 12:04:05] 2025-11-25 17:03:01,915 | INFO     | 
[2025-11-25 12:04:05] 2025-11-25 17:03:01,915 | INFO     | job summary report
[2025-11-25 12:04:05] 2025-11-25 17:03:01,915 | INFO     | --------------------------------------------------
[2025-11-25 12:04:05] 2025-11-25 17:03:01,916 | INFO     | PanDA job id: 6895338454
[2025-11-25 12:04:05] 2025-11-25 17:03:01,916 | INFO     | task id: 47556137
[2025-11-25 12:04:05] 2025-11-25 17:03:01,916 | INFO     | errors: (none)
[2025-11-25 12:04:05] 2025-11-25 17:03:01,916 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 12:04:05] 2025-11-25 17:03:01,916 | INFO     | pilot state: finished 
[2025-11-25 12:04:05] 2025-11-25 17:03:01,916 | INFO     | transexitcode: 0
[2025-11-25 12:04:05] 2025-11-25 17:03:01,916 | INFO     | exeerrorcode: 0
[2025-11-25 12:04:05] 2025-11-25 17:03:01,916 | INFO     | exeerrordiag: 
[2025-11-25 12:04:05] 2025-11-25 17:03:01,916 | INFO     | exitcode: 0
[2025-11-25 12:04:05] 2025-11-25 17:03:01,916 | INFO     | exitmsg: OK
[2025-11-25 12:04:05] 2025-11-25 17:03:01,917 | INFO     | cpuconsumptiontime: 307284 s
[2025-11-25 12:04:05] 2025-11-25 17:03:01,917 | INFO     | nevents: 1000
[2025-11-25 12:04:05] 2025-11-25 17:03:01,917 | INFO     | neventsw: 0
[2025-11-25 12:04:05] 2025-11-25 17:03:01,917 | INFO     | pid: 1031526
[2025-11-25 12:04:05] 2025-11-25 17:03:01,917 | INFO     | pgrp: 1031526
[2025-11-25 12:04:05] 2025-11-25 17:03:01,917 | INFO     | corecount: 10
[2025-11-25 12:04:05] 2025-11-25 17:03:01,917 | INFO     | event service: False
[2025-11-25 12:04:05] 2025-11-25 17:03:01,917 | INFO     | sizes: {0: 2283981, 1: 2284236, 4: 2284498, 12: 2284526, 82200: 2349620, 82204: 2358803, 82212: 2358993}
[2025-11-25 12:04:05] 2025-11-25 17:03:01,917 | INFO     | --------------------------------------------------
[2025-11-25 12:04:05] 2025-11-25 17:03:01,918 | INFO     | 
[2025-11-25 12:04:05] 2025-11-25 17:03:01,918 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 12:04:05] 2025-11-25 17:03:01,940 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 12:04:05] 2025-11-25 17:03:01,941 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 12:04:05] 2025-11-25 17:03:01,941 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 12:04:05] 2025-11-25 17:03:01,941 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 12:04:05] 2025-11-25 17:03:01,941 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 12:04:05] 2025-11-25 17:03:01,941 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 12:04:05] 2025-11-25 17:03:01,941 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 12:04:05] 2025-11-25 17:03:01,941 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 12:04:05] 2025-11-25 17:03:01,941 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 12:04:05] 2025-11-25 17:03:01,941 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 12:04:05] 2025-11-25 17:03:01,942 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 12:04:05] 2025-11-25 17:03:01,942 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 12:04:05] 2025-11-25 17:03:01,942 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 12:04:05] 2025-11-25 17:03:01,942 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 12:04:05] 2025-11-25 17:03:01,942 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 12:04:05] 2025-11-25 17:03:01,942 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 12:04:05] 2025-11-25 17:03:01,942 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 12:04:05] 2025-11-25 17:03:01,942 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 12:04:05] 2025-11-25 17:03:01,942 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 12:04:05] 2025-11-25 17:03:01,943 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 12:04:05] 2025-11-25 17:03:01,943 | INFO     | job 6895338454 has completed (purged errors)
[2025-11-25 12:04:05] 2025-11-25 17:03:01,943 | INFO     | overall cleanup function is called
[2025-11-25 12:04:05] 2025-11-25 17:03:02,967 | INFO     | --- collectZombieJob: --- 10, [1031526]
[2025-11-25 12:04:05] 2025-11-25 17:03:02,968 | INFO     | zombie collector waiting for pid 1031526
[2025-11-25 12:04:05] 2025-11-25 17:03:02,968 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 12:04:05] 2025-11-25 17:03:02,968 | INFO     | collected zombie processes
[2025-11-25 12:04:05] 2025-11-25 17:03:02,968 | INFO     | will attempt to kill all subprocesses of pid=1031526
[2025-11-25 12:04:05] 2025-11-25 17:03:03,678 | INFO     | process IDs to be killed: [1031526] (in reverse order)
[2025-11-25 12:04:05] 2025-11-25 17:03:03,853 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 12:04:05] 2025-11-25 17:03:03,853 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 12:04:05] 2025-11-25 17:03:03,884 | INFO     | did not find any defunct processes belonging to 1031526
[2025-11-25 12:04:05] 2025-11-25 17:03:03,919 | INFO     | did not find any defunct processes belonging to 1031526
[2025-11-25 12:04:05] 2025-11-25 17:03:03,921 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 12:04:05] 2025-11-25 17:03:03,921 | INFO     | ready for new job
[2025-11-25 12:04:05] 2025-11-25 17:03:03,921 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 12:04:05] 2025-11-25 17:03:03,926 | INFO     | ***************************************
[2025-11-25 12:04:05] 2025-11-25 17:03:03,927 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 12:04:05] 2025-11-25 17:03:03,927 | INFO     | ***************************************
[2025-11-25 12:04:05] 2025-11-25 17:03:03,927 | INFO     | 
[2025-11-25 12:04:05] 2025-11-25 17:03:03,929 | INFO     | architecture information:
[2025-11-25 12:04:05] 2025-11-25 17:03:03,930 | INFO     | executing command: cat /etc/os-release
[2025-11-25 12:04:05] 2025-11-25 17:03:03,950 | INFO     | cat /etc/os-release:
[2025-11-25 12:04:05] NAME="CentOS Linux"
[2025-11-25 12:04:05] VERSION="7 (Core)"
[2025-11-25 12:04:05] ID="centos"
[2025-11-25 12:04:05] ID_LIKE="rhel fedora"
[2025-11-25 12:04:05] VERSION_ID="7"
[2025-11-25 12:04:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 12:04:05] ANSI_COLOR="0;31"
[2025-11-25 12:04:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 12:04:05] HOME_URL="https://www.centos.org/"
[2025-11-25 12:04:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 12:04:05] 
[2025-11-25 12:04:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 12:04:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 12:04:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 12:04:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 12:04:05] 
[2025-11-25 12:04:05] 2025-11-25 17:03:03,950 | INFO     | ***************************************
[2025-11-25 12:04:05] 2025-11-25 17:03:04,453 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 12:04:05] 2025-11-25 17:03:04,474 | INFO     | sufficient remaining disk space (70460112896 B)
[2025-11-25 12:04:05] 2025-11-25 17:03:04,474 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 12:04:05] 2025-11-25 17:03:04,475 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:04:05] 2025-11-25 17:03:04,475 | INFO     | update_server=False
[2025-11-25 12:04:05] 2025-11-25 17:03:04,475 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:04:05] 2025-11-25 17:03:04,584 | INFO     | all payload control threads have been joined
[2025-11-25 12:04:05] 2025-11-25 17:03:04,670 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:04:05] 2025-11-25 17:03:04,670 | INFO     | aborting loop
[2025-11-25 12:04:05] 2025-11-25 17:03:04,895 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:04:05] 2025-11-25 17:03:04,950 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:04:05] 2025-11-25 17:03:05,090 | INFO     | all data control threads have been joined
[2025-11-25 12:04:05] 2025-11-25 17:03:05,438 | INFO     | all job control threads have been joined
[2025-11-25 12:04:05] 2025-11-25 17:03:05,480 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:04:05] 2025-11-25 17:03:05,492 | INFO     | [job] validate thread has finished
[2025-11-25 12:04:05] 2025-11-25 17:03:05,590 | INFO     | [payload] control thread has finished
[2025-11-25 12:04:05] 2025-11-25 17:03:05,676 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:04:05] 2025-11-25 17:03:05,817 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:04:05] 2025-11-25 17:03:05,863 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:04:05] 2025-11-25 17:03:05,864 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:04:05] 2025-11-25 17:03:06,101 | INFO     | [data] control thread has finished
[2025-11-25 12:04:05] 2025-11-25 17:03:06,350 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:04:05] 2025-11-25 17:03:06,451 | INFO     | [job] control thread has finished
[2025-11-25 12:04:05] 2025-11-25 17:03:06,461 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:04:05] 2025-11-25 17:03:06,826 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:04:05] 2025-11-25 17:03:06,913 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:04:05] 2025-11-25 17:03:06,931 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:04:05] 2025-11-25 17:03:07,049 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:04:05] 2025-11-25 17:03:07,936 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:04:05] 2025-11-25 17:03:08,960 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:04:05] 2025-11-25 17:03:35,036 | INFO     | PID=1010601 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 12:04:05] 2025-11-25 17:03:35,036 | INFO     | .. there are 44 such processes running
[2025-11-25 12:04:05] 2025-11-25 17:03:35,037 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:04:05] 2025-11-25 17:03:35,037 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:04:05] 2025-11-25 17:03:35,037 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:04:05] 2025-11-25 17:03:59,185 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:04:05] 2025-11-25 17:03:59,755 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139794236942144)>', '<ExcThread(monitor, started 139793535072000)>']
[2025-11-25 12:04:05] 2025-11-25 17:04:00,197 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:04:05] 2025-11-25 17:04:00,197 | INFO     | [monitor] control thread has ended
[2025-11-25 12:04:05] 2025-11-25 17:04:04,785 | INFO     | all workflow threads have been joined
[2025-11-25 12:04:05] 2025-11-25 17:04:04,785 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:04:05] 2025-11-25 17:04:04,786 | INFO     | traces error code: 0
[2025-11-25 12:04:05] 2025-11-25 17:04:04,786 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:04:05] 2025-11-25 17:04:05,020 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:04:05] 2025-11-25 17:04:05,033 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:04:05] 2025-11-25 17:04:05,035 [wrapper] pilotpid: 1010601
[2025-11-25 12:04:05] 2025-11-25 17:04:05,038 [wrapper] Pilot exit status: 0
[2025-11-25 12:04:05] 2025-11-25 17:04:05,058 [wrapper] pandaids: 6895338454 6895338454
[2025-11-25 12:04:05] 2025-11-25 17:04:05,155 [wrapper] cleanup supervisor_pilot 1015061 1010602
[2025-11-25 12:04:05] 2025-11-25 17:04:05,159 [wrapper] Test setup, not cleaning
[2025-11-25 12:04:05] 2025-11-25 17:04:05,162 [wrapper] apfmon messages muted
[2025-11-25 12:04:05] 2025-11-25 17:04:05,165 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:04:05] 2025-11-25 17:04:05,168 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:04:05]  *** Error codes and diagnostics ***
[2025-11-25 12:04:05]     "exeErrorCode": 0,
[2025-11-25 12:04:05]     "exeErrorDiag": "",
[2025-11-25 12:04:05]     "pilotErrorCode": 0,
[2025-11-25 12:04:05]     "pilotErrorDiag": "",
[2025-11-25 12:04:05]  *** Listing of results directory ***
[2025-11-25 12:04:05] total 1735464
[2025-11-25 12:04:05] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 12:04:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 04:00 pilot3.tar.gz
[2025-11-25 12:04:05] -rwx------. 1 boincer umatlas     36292 Nov 22 04:03 runpilot2-wrapper.sh
[2025-11-25 12:04:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 04:03 queuedata.json
[2025-11-25 12:04:05] -rw-r--r--. 1 boincer umatlas       100 Nov 24 12:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:04:05] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 12:51 run_atlas
[2025-11-25 12:04:05] -rw-r--r--. 1 boincer umatlas       105 Nov 24 12:51 job.xml
[2025-11-25 12:04:05] -rw-r--r--. 3 boincer umatlas 409616144 Nov 24 12:51 EVNT.47483658._000326.pool.root.1
[2025-11-25 12:04:05] -rw-r--r--. 3 boincer umatlas 409616144 Nov 24 12:51 ATLAS.root_0
[2025-11-25 12:04:05] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 12:51 shared
[2025-11-25 12:04:05] -rw-r--r--. 2 boincer umatlas    590096 Nov 24 12:51 input.tar.gz
[2025-11-25 12:04:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 12:51 start_atlas.sh
[2025-11-25 12:04:05] -rw-r--r--. 1 boincer umatlas         0 Nov 24 12:51 boinc_lockfile
[2025-11-25 12:04:05] -rw-r--r--. 1 boincer umatlas      2784 Nov 24 13:12 pandaJob.out
[2025-11-25 12:04:05] -rw-------. 1 boincer umatlas        57 Nov 24 13:12 setup.sh.local
[2025-11-25 12:04:05] -rw-------. 1 boincer umatlas    991801 Nov 24 13:12 agis_schedconf.cvmfs.json
[2025-11-25 12:04:05] -rw-r--r--. 1 boincer umatlas       533 Nov 25 11:37 boinc_task_state.xml
[2025-11-25 12:04:05] -rw-r--r--. 1 boincer umatlas      6659 Nov 25 12:00 init_data.xml
[2025-11-25 12:04:05] -rw-------. 1 boincer umatlas 926281484 Nov 25 12:02 HITS.47556137._003229.pool.root.1
[2025-11-25 12:04:05] -rw-------. 1 boincer umatlas      1077 Nov 25 12:02 memory_monitor_summary.json
[2025-11-25 12:04:05] -rw-------. 1 boincer umatlas   1516240 Nov 25 12:02 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:04:05] -rw-------. 1 boincer umatlas   2680328 Nov 25 12:02 log.47556137._003229.job.log.tgz.1
[2025-11-25 12:04:05] -rw-------. 1 boincer umatlas      8657 Nov 25 12:03 heartbeat.json
[2025-11-25 12:04:05] -rw-------. 1 boincer umatlas        96 Nov 25 12:03 pilot_heartbeat.json
[2025-11-25 12:04:05] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 12:04 boinc_mmap_file
[2025-11-25 12:04:05] -rw-------. 1 boincer umatlas      4824 Nov 25 12:04 pilotlog.txt
[2025-11-25 12:04:05] -rw-r--r--. 1 boincer umatlas        29 Nov 25 12:04 wrapper_checkpoint.txt
[2025-11-25 12:04:05] -rw-------. 1 boincer umatlas  11157905 Nov 25 12:04 log.47556137._003229.job.log.1
[2025-11-25 12:04:05] -rw-------. 1 boincer umatlas       353 Nov 25 12:04 output.list
[2025-11-25 12:04:05] -rw-r--r--. 1 boincer umatlas       620 Nov 25 12:04 runtime_log
[2025-11-25 12:04:05] -rw-------. 1 boincer umatlas  13854720 Nov 25 12:04 result.tar.gz
[2025-11-25 12:04:05] -rw-------. 1 boincer umatlas       787 Nov 25 12:04 Vv9NDmghyg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm44JKDmLowvFo.diag
[2025-11-25 12:04:05] -rw-r--r--. 1 boincer umatlas      9420 Nov 25 12:04 runtime_log.err
[2025-11-25 12:04:05] -rw-r--r--. 1 boincer umatlas     23492 Nov 25 12:04 stderr.txt
[2025-11-25 12:04:05] HITS file was successfully produced:
[2025-11-25 12:04:05] -rw-------. 1 boincer umatlas 926281484 Nov 25 12:02 shared/HITS.pool.root.1
[2025-11-25 12:04:05]  *** Contents of shared directory: ***
[2025-11-25 12:04:05] total 1318724
[2025-11-25 12:04:05] -rw-r--r--. 3 boincer umatlas 409616144 Nov 24 12:51 ATLAS.root_0
[2025-11-25 12:04:05] -rw-r--r--. 2 boincer umatlas    590096 Nov 24 12:51 input.tar.gz
[2025-11-25 12:04:05] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 12:51 start_atlas.sh
[2025-11-25 12:04:05] -rw-------. 1 boincer umatlas 926281484 Nov 25 12:02 HITS.pool.root.1
[2025-11-25 12:04:05] -rw-------. 1 boincer umatlas  13854720 Nov 25 12:04 result.tar.gz
12:04:07 (998750): run_atlas exited; CPU time 309896.454969
12:04:07 (998750): called boinc_finish(0)

</stderr_txt>
]]>

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