Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:52 (3943716): wrapper (7.7.26015): starting
00:00:52 (3943716): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:00:52] Arguments: --nthreads 9
[2025-11-24 00:00:52] Threads: 9
[2025-11-24 00:00:52] Checking for CVMFS
[2025-11-24 00:00:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:00:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:00:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:00:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:00:56] 2.13.3.0 12161 26722 324028 153233 2 325 38832466 40960001 20222 16776704 0 68086215 99.547 82051791 38847 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:00:56] CVMFS is ok
[2025-11-24 00:00:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:00:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:00:56] Further information can be found at the LHC@home message board.
[2025-11-24 00:00:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:00:56] Checking for apptainer binary...
[2025-11-24 00:00:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:00:56] Running /usr/bin/apptainer --version
[2025-11-24 00:00:56] apptainer version 1.4.4-1.el9
[2025-11-24 00:00:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:00:57] c6-5-7-1.aglt2.org
[2025-11-24 00:00:57] apptainer works
[2025-11-24 00:00:57] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:00:57] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:00:57] Starting ATLAS job with PandaID=6895350771
[2025-11-24 00:00:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 11:38:04]  *** The last 200 lines of the pilot log: ***
[2025-11-25 11:38:04] 2025-11-25 16:36:23,951 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 11:38:04] 2025-11-25 16:36:25,903 | INFO     | monitor loop #7341: job 0:6895350771 is in state 'finished'
[2025-11-25 11:38:04] 2025-11-25 16:36:25,904 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:38:04] 2025-11-25 16:36:25,938 | INFO     | time since job start (128031s) is within the limit (172800.0s)
[2025-11-25 11:38:04] 2025-11-25 16:36:27,945 | INFO     | time since job start (128033s) is within the limit (172800.0s)
[2025-11-25 11:38:04] 2025-11-25 16:36:28,410 | INFO     | monitor loop #7342: job 0:6895350771 is in state 'finished'
[2025-11-25 11:38:04] 2025-11-25 16:36:28,410 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:38:04] 2025-11-25 16:36:29,953 | INFO     | time since job start (128035s) is within the limit (172800.0s)
[2025-11-25 11:38:04] 2025-11-25 16:36:30,916 | INFO     | monitor loop #7343: job 0:6895350771 is in state 'finished'
[2025-11-25 11:38:04] 2025-11-25 16:36:30,916 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:38:04] 2025-11-25 16:36:31,959 | INFO     | time since job start (128037s) is within the limit (172800.0s)
[2025-11-25 11:38:04] 2025-11-25 16:36:33,421 | INFO     | monitor loop #7344: job 0:6895350771 is in state 'finished'
[2025-11-25 11:38:04] 2025-11-25 16:36:33,421 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:38:04] 2025-11-25 16:36:33,965 | INFO     | time since job start (128039s) is within the limit (172800.0s)
[2025-11-25 11:38:04] 2025-11-25 16:36:35,929 | INFO     | monitor loop #7345: job 0:6895350771 is in state 'finished'
[2025-11-25 11:38:04] 2025-11-25 16:36:35,929 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:38:04] 2025-11-25 16:36:35,974 | INFO     | time since job start (128041s) is within the limit (172800.0s)
[2025-11-25 11:38:04] 2025-11-25 16:36:36,215 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 11:38:04] 2025-11-25 16:36:36,223 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2923.264303571429
[2025-11-25 11:38:04] 2025-11-25 16:36:36,231 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895350771/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 11:38:04] 2025-11-25 16:36:36,232 | INFO     | extracted standard info from prmon json
[2025-11-25 11:38:04] 2025-11-25 16:36:36,232 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 11:38:04] 2025-11-25 16:36:36,232 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 11:38:04] 2025-11-25 16:36:36,260 | INFO     | fitting pss+swap vs Time
[2025-11-25 11:38:04] 2025-11-25 16:36:36,263 | INFO     | sum of square deviations: 2855258906558.4814
[2025-11-25 11:38:04] 2025-11-25 16:36:36,332 | INFO     | sum of deviations: 13930772478368.076
[2025-11-25 11:38:04] 2025-11-25 16:36:36,332 | INFO     | mean x: 1764024675.3592558
[2025-11-25 11:38:04] 2025-11-25 16:36:36,332 | INFO     | mean y: 3071629.4527671756
[2025-11-25 11:38:04] 2025-11-25 16:36:36,332 | INFO     | intersect: -8603582689.07867
[2025-11-25 11:38:04] 2025-11-25 16:36:36,334 | INFO     | chi2: 21.40826097694439
[2025-11-25 11:38:04] 2025-11-25 16:36:36,336 | INFO     | sum of square deviations: 2834876135598.832
[2025-11-25 11:38:04] 2025-11-25 16:36:36,458 | INFO     | sum of deviations: 14687823991390.293
[2025-11-25 11:38:04] 2025-11-25 16:36:36,459 | INFO     | mean x: 1764024522.868484
[2025-11-25 11:38:04] 2025-11-25 16:36:36,459 | INFO     | mean y: 3077292.5901482543
[2025-11-25 11:38:04] 2025-11-25 16:36:36,459 | INFO     | intersect: -9136539561.574606
[2025-11-25 11:38:04] 2025-11-25 16:36:36,465 | INFO     | chi2: 18.18459702386757
[2025-11-25 11:38:04] 2025-11-25 16:36:36,466 | INFO     | current chi2=18.18459702386757 (change=15.058037439605867 %)
[2025-11-25 11:38:04] 2025-11-25 16:36:36,466 | INFO     | right removable region: 2090
[2025-11-25 11:38:04] 2025-11-25 16:36:36,468 | INFO     | sum of square deviations: 2834871201308.8364
[2025-11-25 11:38:04] 2025-11-25 16:36:36,624 | INFO     | sum of deviations: 12986215393916.912
[2025-11-25 11:38:04] 2025-11-25 16:36:36,624 | INFO     | mean x: 1764024827.868484
[2025-11-25 11:38:04] 2025-11-25 16:36:36,625 | INFO     | mean y: 3078694.8541367766
[2025-11-25 11:38:04] 2025-11-25 16:36:36,625 | INFO     | intersect: -8077713957.856471
[2025-11-25 11:38:04] 2025-11-25 16:36:36,627 | INFO     | chi2: 16.74818728744812
[2025-11-25 11:38:04] 2025-11-25 16:36:36,627 | INFO     | current chi2=16.74818728744812 (change=21.767642381204784 %)
[2025-11-25 11:38:04] 2025-11-25 16:36:36,628 | INFO     | left removable region: 10
[2025-11-25 11:38:04] 2025-11-25 16:36:36,634 | INFO     | sum of square deviations: 2790366572283.6753
[2025-11-25 11:38:04] 2025-11-25 16:36:36,782 | INFO     | sum of deviations: 13072047622867.23
[2025-11-25 11:38:04] 2025-11-25 16:36:36,782 | INFO     | mean x: 1764024797.3875
[2025-11-25 11:38:04] 2025-11-25 16:36:36,782 | INFO     | mean y: 3091685.6548076924
[2025-11-25 11:38:04] 2025-11-25 16:36:36,782 | INFO     | intersect: -8260846245.803412
[2025-11-25 11:38:04] 2025-11-25 16:36:36,789 | INFO     | chi2: 9.507995186080134
[2025-11-25 11:38:04] 2025-11-25 16:36:36,789 | INFO     | current memory leak: 4.68 B/s (using 2080 data points, chi2=9.51)
[2025-11-25 11:38:04] 2025-11-25 16:36:36,791 | INFO     | could have reported an average CPU frequency of 2939 MHz (73 samples)
[2025-11-25 11:38:04] 2025-11-25 16:36:36,792 | INFO     | ..............................
[2025-11-25 11:38:04] 2025-11-25 16:36:36,792 | INFO     | . Timing measurements:
[2025-11-25 11:38:04] 2025-11-25 16:36:36,796 | INFO     | . get job = 0 s
[2025-11-25 11:38:04] 2025-11-25 16:36:36,796 | INFO     | . initial setup = 7 s
[2025-11-25 11:38:04] 2025-11-25 16:36:36,796 | INFO     | . payload setup = 68 s
[2025-11-25 11:38:04] 2025-11-25 16:36:36,796 | INFO     | . stage-in = 1 s
[2025-11-25 11:38:04] 2025-11-25 16:36:36,796 | INFO     | . payload execution = 127848 s
[2025-11-25 11:38:04] 2025-11-25 16:36:36,796 | INFO     | . stage-out = 7 s
[2025-11-25 11:38:04] 2025-11-25 16:36:36,797 | INFO     | . log creation = 2 s
[2025-11-25 11:38:04] 2025-11-25 16:36:36,797 | INFO     | ..............................
[2025-11-25 11:38:04] 2025-11-25 16:36:37,346 | INFO     | 
[2025-11-25 11:38:04] 2025-11-25 16:36:37,346 | INFO     | job summary report
[2025-11-25 11:38:04] 2025-11-25 16:36:37,346 | INFO     | --------------------------------------------------
[2025-11-25 11:38:04] 2025-11-25 16:36:37,346 | INFO     | PanDA job id: 6895350771
[2025-11-25 11:38:04] 2025-11-25 16:36:37,347 | INFO     | task id: 47556137
[2025-11-25 11:38:04] 2025-11-25 16:36:37,347 | INFO     | errors: (none)
[2025-11-25 11:38:04] 2025-11-25 16:36:37,347 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 11:38:04] 2025-11-25 16:36:37,347 | INFO     | pilot state: finished 
[2025-11-25 11:38:04] 2025-11-25 16:36:37,347 | INFO     | transexitcode: 0
[2025-11-25 11:38:04] 2025-11-25 16:36:37,347 | INFO     | exeerrorcode: 0
[2025-11-25 11:38:04] 2025-11-25 16:36:37,347 | INFO     | exeerrordiag: 
[2025-11-25 11:38:04] 2025-11-25 16:36:37,347 | INFO     | exitcode: 0
[2025-11-25 11:38:04] 2025-11-25 16:36:37,347 | INFO     | exitmsg: OK
[2025-11-25 11:38:04] 2025-11-25 16:36:37,347 | INFO     | cpuconsumptiontime: 245034 s
[2025-11-25 11:38:04] 2025-11-25 16:36:37,347 | INFO     | nevents: 1000
[2025-11-25 11:38:04] 2025-11-25 16:36:37,347 | INFO     | neventsw: 0
[2025-11-25 11:38:04] 2025-11-25 16:36:37,347 | INFO     | pid: 3980781
[2025-11-25 11:38:04] 2025-11-25 16:36:37,347 | INFO     | pgrp: 3980781
[2025-11-25 11:38:04] 2025-11-25 16:36:37,347 | INFO     | corecount: 9
[2025-11-25 11:38:04] 2025-11-25 16:36:37,347 | INFO     | event service: False
[2025-11-25 11:38:04] 2025-11-25 16:36:37,348 | INFO     | sizes: {0: 2298478, 1: 2298562, 2: 2298562, 3: 2298761, 4: 2298761, 15: 2298789, 26: 2298945, 37: 2298973, 45: 2299263, 48: 2299291, 127918: 2382073, 127919: 23823
[2025-11-25 11:38:04] 2025-11-25 16:36:37,348 | INFO     | --------------------------------------------------
[2025-11-25 11:38:04] 2025-11-25 16:36:37,348 | INFO     | 
[2025-11-25 11:38:04] 2025-11-25 16:36:37,348 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-25 11:38:04] 2025-11-25 16:36:37,384 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 11:38:04] 2025-11-25 16:36:37,385 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 11:38:04] 2025-11-25 16:36:37,385 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 11:38:04] 2025-11-25 16:36:37,385 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 11:38:04] 2025-11-25 16:36:37,385 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 11:38:04] 2025-11-25 16:36:37,385 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 11:38:04] 2025-11-25 16:36:37,385 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 11:38:04] 2025-11-25 16:36:37,385 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 11:38:04] 2025-11-25 16:36:37,385 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 11:38:04] 2025-11-25 16:36:37,385 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 11:38:04] 2025-11-25 16:36:37,386 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 11:38:04] 2025-11-25 16:36:37,386 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 11:38:04] 2025-11-25 16:36:37,386 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 11:38:04] 2025-11-25 16:36:37,386 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 11:38:04] 2025-11-25 16:36:37,386 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 11:38:04] 2025-11-25 16:36:37,386 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 11:38:04] 2025-11-25 16:36:37,386 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 11:38:04] 2025-11-25 16:36:37,386 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 11:38:04] 2025-11-25 16:36:37,386 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 11:38:04] 2025-11-25 16:36:37,386 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 11:38:04] 2025-11-25 16:36:37,387 | INFO     | job 6895350771 has completed (purged errors)
[2025-11-25 11:38:04] 2025-11-25 16:36:37,387 | INFO     | overall cleanup function is called
[2025-11-25 11:38:04] 2025-11-25 16:36:38,404 | INFO     | --- collectZombieJob: --- 10, [3980781]
[2025-11-25 11:38:04] 2025-11-25 16:36:38,404 | INFO     | zombie collector waiting for pid 3980781
[2025-11-25 11:38:04] 2025-11-25 16:36:38,404 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 11:38:04] 2025-11-25 16:36:38,404 | INFO     | collected zombie processes
[2025-11-25 11:38:04] 2025-11-25 16:36:38,405 | INFO     | will attempt to kill all subprocesses of pid=3980781
[2025-11-25 11:38:04] 2025-11-25 16:36:39,041 | INFO     | process IDs to be killed: [3980781] (in reverse order)
[2025-11-25 11:38:04] 2025-11-25 16:36:39,178 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 11:38:04] 2025-11-25 16:36:39,179 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 11:38:04] 2025-11-25 16:36:39,213 | INFO     | did not find any defunct processes belonging to 3980781
[2025-11-25 11:38:04] 2025-11-25 16:36:39,243 | INFO     | did not find any defunct processes belonging to 3980781
[2025-11-25 11:38:04] 2025-11-25 16:36:39,249 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 11:38:04] 2025-11-25 16:36:39,249 | INFO     | ready for new job
[2025-11-25 11:38:04] 2025-11-25 16:36:39,249 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 11:38:04] 2025-11-25 16:36:39,265 | INFO     | ***************************************
[2025-11-25 11:38:04] 2025-11-25 16:36:39,265 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 11:38:04] 2025-11-25 16:36:39,265 | INFO     | ***************************************
[2025-11-25 11:38:04] 2025-11-25 16:36:39,265 | INFO     | 
[2025-11-25 11:38:04] 2025-11-25 16:36:39,272 | INFO     | architecture information:
[2025-11-25 11:38:04] 2025-11-25 16:36:39,273 | INFO     | executing command: cat /etc/os-release
[2025-11-25 11:38:04] 2025-11-25 16:36:39,389 | INFO     | cat /etc/os-release:
[2025-11-25 11:38:04] NAME="CentOS Linux"
[2025-11-25 11:38:04] VERSION="7 (Core)"
[2025-11-25 11:38:04] ID="centos"
[2025-11-25 11:38:04] ID_LIKE="rhel fedora"
[2025-11-25 11:38:04] VERSION_ID="7"
[2025-11-25 11:38:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 11:38:04] ANSI_COLOR="0;31"
[2025-11-25 11:38:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 11:38:04] HOME_URL="https://www.centos.org/"
[2025-11-25 11:38:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 11:38:04] 
[2025-11-25 11:38:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 11:38:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 11:38:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 11:38:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 11:38:04] 
[2025-11-25 11:38:04] 2025-11-25 16:36:39,389 | INFO     | ***************************************
[2025-11-25 11:38:04] 2025-11-25 16:36:39,892 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-25 11:38:04] 2025-11-25 16:36:39,919 | INFO     | sufficient remaining disk space (68566384640 B)
[2025-11-25 11:38:04] 2025-11-25 16:36:39,919 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 11:38:04] 2025-11-25 16:36:39,920 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 11:38:04] 2025-11-25 16:36:39,920 | INFO     | update_server=False
[2025-11-25 11:38:04] 2025-11-25 16:36:39,920 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 11:38:04] 2025-11-25 16:36:39,920 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:38:04] 2025-11-25 16:36:39,920 | INFO     | aborting loop
[2025-11-25 11:38:04] 2025-11-25 16:36:39,969 | INFO     | all job control threads have been joined
[2025-11-25 11:38:04] 2025-11-25 16:36:39,988 | INFO     | all data control threads have been joined
[2025-11-25 11:38:04] 2025-11-25 16:36:40,794 | INFO     | all payload control threads have been joined
[2025-11-25 11:38:04] 2025-11-25 16:36:40,890 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 11:38:04] 2025-11-25 16:36:40,926 | INFO     | [job] retrieve thread has finished
[2025-11-25 11:38:04] 2025-11-25 16:36:40,934 | INFO     | [job] job monitor thread has finished
[2025-11-25 11:38:04] 2025-11-25 16:36:40,974 | INFO     | [job] control thread has finished
[2025-11-25 11:38:04] 2025-11-25 16:36:40,994 | INFO     | [data] control thread has finished
[2025-11-25 11:38:04] 2025-11-25 16:36:41,093 | INFO     | [job] validate thread has finished
[2025-11-25 11:38:04] 2025-11-25 16:36:41,154 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 11:38:04] 2025-11-25 16:36:41,522 | INFO     | [payload] failed_post thread has finished
[2025-11-25 11:38:04] 2025-11-25 16:36:41,802 | INFO     | [payload] control thread has finished
[2025-11-25 11:38:04] 2025-11-25 16:36:41,910 | INFO     | [payload] validate_post thread has finished
[2025-11-25 11:38:04] 2025-11-25 16:36:42,011 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 11:38:04] 2025-11-25 16:36:42,048 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:38:04] 2025-11-25 16:36:42,083 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 11:38:04] 2025-11-25 16:36:42,332 | INFO     | [data] copytool_in thread has finished
[2025-11-25 11:38:04] 2025-11-25 16:36:42,384 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 11:38:04] 2025-11-25 16:36:42,723 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 11:38:04] 2025-11-25 16:36:42,900 | INFO     | [data] copytool_out thread has finished
[2025-11-25 11:38:04] 2025-11-25 16:36:43,054 | INFO     | [job] queue monitor thread has finished
[2025-11-25 11:38:04] 2025-11-25 16:36:46,732 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 11:38:04] 2025-11-25 16:37:10,321 | INFO     | PID=3954747 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 11:38:04] 2025-11-25 16:37:10,321 | INFO     | .. there are 25 such processes running
[2025-11-25 11:38:04] 2025-11-25 16:37:10,324 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 11:38:04] 2025-11-25 16:37:10,325 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 11:38:04] 2025-11-25 16:37:10,325 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 11:38:04] 2025-11-25 16:37:38,169 | INFO     | [monitor] cgroup control has ended
[2025-11-25 11:38:04] 2025-11-25 16:37:39,787 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139683751249728)>', '<ExcThread(monitor, started 139683090634496)>']
[2025-11-25 11:38:04] 2025-11-25 16:37:40,597 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 11:38:04] 2025-11-25 16:37:40,597 | INFO     | [monitor] control thread has ended
[2025-11-25 11:38:04] 2025-11-25 16:37:44,813 | INFO     | all workflow threads have been joined
[2025-11-25 11:38:04] 2025-11-25 16:37:44,813 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 11:38:04] 2025-11-25 16:37:44,814 | INFO     | traces error code: 0
[2025-11-25 11:38:04] 2025-11-25 16:37:44,814 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 11:38:04] 2025-11-25 16:37:45,492 [wrapper] ==== pilot stdout END ====
[2025-11-25 11:38:04] 2025-11-25 16:37:45,514 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 11:38:04] 2025-11-25 16:37:45,541 [wrapper] pilotpid: 3954747
[2025-11-25 11:38:04] 2025-11-25 16:37:45,590 [wrapper] Pilot exit status: 0
[2025-11-25 11:38:04] 2025-11-25 16:37:45,703 [wrapper] pandaids: 6895350771
[2025-11-25 11:38:04] 2025-11-25 16:37:45,882 [wrapper] cleanup supervisor_pilot 1417647 3954748
[2025-11-25 11:38:04] 2025-11-25 16:37:45,903 [wrapper] Test setup, not cleaning
[2025-11-25 11:38:04] 2025-11-25 16:37:45,943 [wrapper] apfmon messages muted
[2025-11-25 11:38:04] 2025-11-25 16:37:45,966 [wrapper] ==== wrapper stdout END ====
[2025-11-25 11:38:04] 2025-11-25 16:37:46,015 [wrapper] ==== wrapper stderr END ====
[2025-11-25 11:38:04]  *** Error codes and diagnostics ***
[2025-11-25 11:38:04]     "exeErrorCode": 0,
[2025-11-25 11:38:04]     "exeErrorDiag": "",
[2025-11-25 11:38:04]     "pilotErrorCode": 0,
[2025-11-25 11:38:04]     "pilotErrorDiag": "",
[2025-11-25 11:38:04]  *** Listing of results directory ***
[2025-11-25 11:38:04] total 1343860
[2025-11-25 11:38:04] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 17:07 pilot3.tar.gz
[2025-11-25 11:38:04] -rwx------. 1 boincer umatlas     36292 Nov 22 17:09 runpilot2-wrapper.sh
[2025-11-25 11:38:04] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 17:09 queuedata.json
[2025-11-25 11:38:04] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 11:38:04] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:00 run_atlas
[2025-11-25 11:38:04] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:00 job.xml
[2025-11-25 11:38:04] -rw-r--r--. 2 boincer umatlas 409686836 Nov 24 00:00 EVNT.47483658._000522.pool.root.1
[2025-11-25 11:38:04] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:00 start_atlas.sh
[2025-11-25 11:38:04] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:00 shared
[2025-11-25 11:38:04] -rw-r--r--. 2 boincer umatlas    590099 Nov 24 00:00 input.tar.gz
[2025-11-25 11:38:04] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:00 boinc_lockfile
[2025-11-25 11:38:04] -rw-r--r--. 1 boincer umatlas      2784 Nov 24 00:00 pandaJob.out
[2025-11-25 11:38:04] -rw-------. 1 boincer umatlas        57 Nov 24 00:00 setup.sh.local
[2025-11-25 11:38:04] -rw-------. 1 boincer umatlas    989786 Nov 24 00:02 agis_schedconf.cvmfs.json
[2025-11-25 11:38:04] drwx------. 5 boincer umatlas      4096 Nov 24 00:02 pilot3
[2025-11-25 11:38:04] -rw-r--r--. 1 boincer umatlas       533 Nov 25 11:16 boinc_task_state.xml
[2025-11-25 11:38:04] -rw-r--r--. 1 boincer umatlas      6841 Nov 25 11:30 init_data.xml
[2025-11-25 11:38:04] -rw-------. 1 boincer umatlas 924988161 Nov 25 11:35 HITS.47556137._005178.pool.root.1
[2025-11-25 11:38:04] -rw-------. 1 boincer umatlas      1072 Nov 25 11:36 memory_monitor_summary.json
[2025-11-25 11:38:04] -rw-------. 1 boincer umatlas   1516240 Nov 25 11:36 agis_ddmendpoints.agis.ALL.json
[2025-11-25 11:38:04] -rw-------. 1 boincer umatlas   3026456 Nov 25 11:36 log.47556137._005178.job.log.tgz.1
[2025-11-25 11:38:04] -rw-------. 1 boincer umatlas      8656 Nov 25 11:36 heartbeat.json
[2025-11-25 11:38:04] -rw-------. 1 boincer umatlas        95 Nov 25 11:37 pilot_heartbeat.json
[2025-11-25 11:38:04] -rw-------. 1 boincer umatlas      4824 Nov 25 11:37 pilotlog.txt
[2025-11-25 11:38:04] -rw-------. 1 boincer umatlas  15732097 Nov 25 11:37 log.47556137._005178.job.log.1
[2025-11-25 11:38:04] -rw-------. 1 boincer umatlas       353 Nov 25 11:37 output.list
[2025-11-25 11:38:04] -rw-r--r--. 1 boincer umatlas       620 Nov 25 11:37 runtime_log
[2025-11-25 11:38:04] -rw-------. 1 boincer umatlas  18780160 Nov 25 11:37 result.tar.gz
[2025-11-25 11:38:04] -rw-------. 1 boincer umatlas       668 Nov 25 11:37 TF5KDmIyAh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHKIKDmTFby7n.diag
[2025-11-25 11:38:04] -rw-r--r--. 1 boincer umatlas      9344 Nov 25 11:37 runtime_log.err
[2025-11-25 11:38:04] -rw-r--r--. 1 boincer umatlas        29 Nov 25 11:38 wrapper_checkpoint.txt
[2025-11-25 11:38:04] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 11:38 boinc_mmap_file
[2025-11-25 11:38:04] -rw-r--r--. 1 boincer umatlas     21921 Nov 25 11:38 stderr.txt
[2025-11-25 11:38:04] HITS file was successfully produced:
[2025-11-25 11:38:04] -rw-------. 1 boincer umatlas 924988161 Nov 25 11:35 shared/HITS.pool.root.1
[2025-11-25 11:38:04]  *** Contents of shared directory: ***
[2025-11-25 11:38:04] total 1322344
[2025-11-25 11:38:04] -rw-r--r--. 2 boincer umatlas 409686836 Nov 24 00:00 ATLAS.root_0
[2025-11-25 11:38:04] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:00 start_atlas.sh
[2025-11-25 11:38:04] -rw-r--r--. 2 boincer umatlas    590099 Nov 24 00:00 input.tar.gz
[2025-11-25 11:38:04] -rw-------. 1 boincer umatlas 924988161 Nov 25 11:35 HITS.pool.root.1
[2025-11-25 11:38:04] -rw-------. 1 boincer umatlas  18780160 Nov 25 11:37 result.tar.gz
11:38:06 (3943716): run_atlas exited; CPU time 247428.060883
11:38:06 (3943716): called boinc_finish(0)

</stderr_txt>
]]>

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