Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:00 (3944464): wrapper (7.7.26015): starting
00:01:00 (3944464): wrapper: running run_atlas (--nthreads 9)
[2025-11-24 00:01:00] Arguments: --nthreads 9
[2025-11-24 00:01:00] Threads: 9
[2025-11-24 00:01:00] Checking for CVMFS
[2025-11-24 00:01:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:01:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:01:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:01:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:01:04] 2.13.3.0 12161 26723 324028 153233 2 325 38832466 40960001 20252 16776704 0 68088963 99.547 82051791 38847 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 00:01:04] CVMFS is ok
[2025-11-24 00:01:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:01:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:01:04] Further information can be found at the LHC@home message board.
[2025-11-24 00:01:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:01:04] Checking for apptainer binary...
[2025-11-24 00:01:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:01:04] Running /usr/bin/apptainer --version
[2025-11-24 00:01:04] apptainer version 1.4.4-1.el9
[2025-11-24 00:01:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:01:06] c6-5-7-1.aglt2.org
[2025-11-24 00:01:06] apptainer works
[2025-11-24 00:01:06] Set ATHENA_PROC_NUMBER=9
[2025-11-24 00:01:06] Set ATHENA_CORE_NUMBER=9
[2025-11-24 00:01:06] Starting ATLAS job with PandaID=6895350619
[2025-11-24 00:01:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 11:39:54]  *** The last 200 lines of the pilot log: ***
[2025-11-25 11:39:54] 2025-11-25 16:38:38,800 | INFO     | monitor loop #7168: job 0:6895350619 is in state 'finished'
[2025-11-25 11:39:54] 2025-11-25 16:38:38,800 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:39:54] 2025-11-25 16:38:38,806 | INFO     | time since job start (128159s) is within the limit (172800.0s)
[2025-11-25 11:39:54] 2025-11-25 16:38:38,914 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 11:39:54] 2025-11-25 16:38:40,816 | INFO     | time since job start (128161s) is within the limit (172800.0s)
[2025-11-25 11:39:54] 2025-11-25 16:38:41,308 | INFO     | monitor loop #7169: job 0:6895350619 is in state 'finished'
[2025-11-25 11:39:54] 2025-11-25 16:38:41,308 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:39:54] 2025-11-25 16:38:42,823 | INFO     | time since job start (128163s) is within the limit (172800.0s)
[2025-11-25 11:39:54] 2025-11-25 16:38:43,818 | INFO     | monitor loop #7170: job 0:6895350619 is in state 'finished'
[2025-11-25 11:39:54] 2025-11-25 16:38:43,818 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:39:54] 2025-11-25 16:38:44,847 | INFO     | time since job start (128165s) is within the limit (172800.0s)
[2025-11-25 11:39:54] 2025-11-25 16:38:46,327 | INFO     | monitor loop #7171: job 0:6895350619 is in state 'finished'
[2025-11-25 11:39:54] 2025-11-25 16:38:46,327 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 11:39:54] 2025-11-25 16:38:46,860 | INFO     | time since job start (128167s) is within the limit (172800.0s)
[2025-11-25 11:39:54] 2025-11-25 16:38:48,041 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 11:39:54] 2025-11-25 16:38:48,072 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2940.669803571429
[2025-11-25 11:39:54] 2025-11-25 16:38:48,081 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895350619/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 11:39:54] 2025-11-25 16:38:48,081 | INFO     | extracted standard info from prmon json
[2025-11-25 11:39:54] 2025-11-25 16:38:48,081 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 11:39:54] 2025-11-25 16:38:48,081 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 11:39:54] 2025-11-25 16:38:48,110 | INFO     | fitting pss+swap vs Time
[2025-11-25 11:39:54] 2025-11-25 16:38:48,113 | INFO     | sum of square deviations: 2863458854391.5366
[2025-11-25 11:39:54] 2025-11-25 16:38:48,200 | INFO     | sum of deviations: 15293904574562.88
[2025-11-25 11:39:54] 2025-11-25 16:38:48,200 | INFO     | mean x: 1764024739.478551
[2025-11-25 11:39:54] 2025-11-25 16:38:48,200 | INFO     | mean y: 3060782.2631077217
[2025-11-25 11:39:54] 2025-11-25 16:38:48,200 | INFO     | intersect: -9418700592.578056
[2025-11-25 11:39:54] 2025-11-25 16:38:48,202 | INFO     | chi2: 19.60120976158157
[2025-11-25 11:39:54] 2025-11-25 16:38:48,205 | INFO     | sum of square deviations: 2843037193944.698
[2025-11-25 11:39:54] 2025-11-25 16:38:48,381 | INFO     | sum of deviations: 16036949676532.592
[2025-11-25 11:39:54] 2025-11-25 16:38:48,382 | INFO     | mean x: 1764024586.9880555
[2025-11-25 11:39:54] 2025-11-25 16:38:48,382 | INFO     | mean y: 3066330.183468705
[2025-11-25 11:39:54] 2025-11-25 16:38:48,393 | INFO     | intersect: -9947409727.585587
[2025-11-25 11:39:54] 2025-11-25 16:38:48,396 | INFO     | chi2: 16.473339925350913
[2025-11-25 11:39:54] 2025-11-25 16:38:48,397 | INFO     | current chi2=16.473339925350913 (change=15.957534633200495 %)
[2025-11-25 11:39:54] 2025-11-25 16:38:48,397 | INFO     | right removable region: 2092
[2025-11-25 11:39:54] 2025-11-25 16:38:48,404 | INFO     | sum of square deviations: 2843032230015.673
[2025-11-25 11:39:54] 2025-11-25 16:38:48,543 | INFO     | sum of deviations: 14351951284592.646
[2025-11-25 11:39:54] 2025-11-25 16:38:48,543 | INFO     | mean x: 1764024891.9875777
[2025-11-25 11:39:54] 2025-11-25 16:38:48,543 | INFO     | mean y: 3067814.75537506
[2025-11-25 11:39:54] 2025-11-25 16:38:48,544 | INFO     | intersect: -8901931237.779093
[2025-11-25 11:39:54] 2025-11-25 16:38:48,546 | INFO     | chi2: 14.942047562269112
[2025-11-25 11:39:54] 2025-11-25 16:38:48,546 | INFO     | current chi2=14.942047562269112 (change=23.769768580531334 %)
[2025-11-25 11:39:54] 2025-11-25 16:38:48,546 | INFO     | left removable region: 10
[2025-11-25 11:39:54] 2025-11-25 16:38:48,548 | INFO     | sum of square deviations: 2798442086566.3745
[2025-11-25 11:39:54] 2025-11-25 16:38:48,617 | INFO     | sum of deviations: 14424260172166.209
[2025-11-25 11:39:54] 2025-11-25 16:38:48,617 | INFO     | mean x: 1764024861.507685
[2025-11-25 11:39:54] 2025-11-25 16:38:48,617 | INFO     | mean y: 3080635.363112392
[2025-11-25 11:39:54] 2025-11-25 16:38:48,617 | INFO     | intersect: -9089390377.241068
[2025-11-25 11:39:54] 2025-11-25 16:38:48,620 | INFO     | chi2: 7.830988232837634
[2025-11-25 11:39:54] 2025-11-25 16:38:48,620 | INFO     | current memory leak: 5.15 B/s (using 2082 data points, chi2=7.83)
[2025-11-25 11:39:54] 2025-11-25 16:38:48,622 | INFO     | could have reported an average CPU frequency of 2932 MHz (73 samples)
[2025-11-25 11:39:54] 2025-11-25 16:38:48,622 | INFO     | ..............................
[2025-11-25 11:39:54] 2025-11-25 16:38:48,622 | INFO     | . Timing measurements:
[2025-11-25 11:39:54] 2025-11-25 16:38:48,622 | INFO     | . get job = 0 s
[2025-11-25 11:39:54] 2025-11-25 16:38:48,622 | INFO     | . initial setup = 4 s
[2025-11-25 11:39:54] 2025-11-25 16:38:48,622 | INFO     | . payload setup = 72 s
[2025-11-25 11:39:54] 2025-11-25 16:38:48,622 | INFO     | . stage-in = 0 s
[2025-11-25 11:39:54] 2025-11-25 16:38:48,622 | INFO     | . payload execution = 127976 s
[2025-11-25 11:39:54] 2025-11-25 16:38:48,622 | INFO     | . stage-out = 5 s
[2025-11-25 11:39:54] 2025-11-25 16:38:48,622 | INFO     | . log creation = 1 s
[2025-11-25 11:39:54] 2025-11-25 16:38:48,622 | INFO     | ..............................
[2025-11-25 11:39:54] 2025-11-25 16:38:48,706 | INFO     | 
[2025-11-25 11:39:54] 2025-11-25 16:38:48,706 | INFO     | job summary report
[2025-11-25 11:39:54] 2025-11-25 16:38:48,706 | INFO     | --------------------------------------------------
[2025-11-25 11:39:54] 2025-11-25 16:38:48,706 | INFO     | PanDA job id: 6895350619
[2025-11-25 11:39:54] 2025-11-25 16:38:48,706 | INFO     | task id: 47556137
[2025-11-25 11:39:54] 2025-11-25 16:38:48,706 | INFO     | errors: (none)
[2025-11-25 11:39:54] 2025-11-25 16:38:48,706 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 11:39:54] 2025-11-25 16:38:48,707 | INFO     | pilot state: finished 
[2025-11-25 11:39:54] 2025-11-25 16:38:48,707 | INFO     | transexitcode: 0
[2025-11-25 11:39:54] 2025-11-25 16:38:48,707 | INFO     | exeerrorcode: 0
[2025-11-25 11:39:54] 2025-11-25 16:38:48,707 | INFO     | exeerrordiag: 
[2025-11-25 11:39:54] 2025-11-25 16:38:48,707 | INFO     | exitcode: 0
[2025-11-25 11:39:54] 2025-11-25 16:38:48,707 | INFO     | exitmsg: OK
[2025-11-25 11:39:54] 2025-11-25 16:38:48,707 | INFO     | cpuconsumptiontime: 248018 s
[2025-11-25 11:39:54] 2025-11-25 16:38:48,707 | INFO     | nevents: 1000
[2025-11-25 11:39:54] 2025-11-25 16:38:48,707 | INFO     | neventsw: 0
[2025-11-25 11:39:54] 2025-11-25 16:38:48,707 | INFO     | pid: 3983713
[2025-11-25 11:39:54] 2025-11-25 16:38:48,707 | INFO     | pgrp: 3983713
[2025-11-25 11:39:54] 2025-11-25 16:38:48,707 | INFO     | corecount: 9
[2025-11-25 11:39:54] 2025-11-25 16:38:48,707 | INFO     | event service: False
[2025-11-25 11:39:54] 2025-11-25 16:38:48,707 | INFO     | sizes: {0: 2297927, 2: 2298612, 3: 2298811, 4: 2298839, 15: 2298839, 26: 2298867, 38: 2299023, 49: 2299051, 51: 2299341, 61: 2299369, 128053: 2382290, 128059: 2392
[2025-11-25 11:39:54] 2025-11-25 16:38:48,707 | INFO     | --------------------------------------------------
[2025-11-25 11:39:54] 2025-11-25 16:38:48,707 | INFO     | 
[2025-11-25 11:39:54] 2025-11-25 16:38:48,708 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-25 11:39:54] 2025-11-25 16:38:48,728 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 11:39:54] 2025-11-25 16:38:48,729 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 11:39:54] 2025-11-25 16:38:48,729 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 11:39:54] 2025-11-25 16:38:48,729 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 11:39:54] 2025-11-25 16:38:48,729 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 11:39:54] 2025-11-25 16:38:48,729 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 11:39:54] 2025-11-25 16:38:48,729 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 11:39:54] 2025-11-25 16:38:48,729 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 11:39:54] 2025-11-25 16:38:48,729 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 11:39:54] 2025-11-25 16:38:48,729 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 11:39:54] 2025-11-25 16:38:48,730 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 11:39:54] 2025-11-25 16:38:48,730 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 11:39:54] 2025-11-25 16:38:48,730 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 11:39:54] 2025-11-25 16:38:48,730 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 11:39:54] 2025-11-25 16:38:48,730 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 11:39:54] 2025-11-25 16:38:48,730 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 11:39:54] 2025-11-25 16:38:48,730 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 11:39:54] 2025-11-25 16:38:48,730 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 11:39:54] 2025-11-25 16:38:48,730 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 11:39:54] 2025-11-25 16:38:48,730 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 11:39:54] 2025-11-25 16:38:48,731 | INFO     | job 6895350619 has completed (purged errors)
[2025-11-25 11:39:54] 2025-11-25 16:38:48,731 | INFO     | overall cleanup function is called
[2025-11-25 11:39:54] 2025-11-25 16:38:49,747 | INFO     | --- collectZombieJob: --- 10, [3983713]
[2025-11-25 11:39:54] 2025-11-25 16:38:49,747 | INFO     | zombie collector waiting for pid 3983713
[2025-11-25 11:39:54] 2025-11-25 16:38:49,748 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 11:39:54] 2025-11-25 16:38:49,748 | INFO     | collected zombie processes
[2025-11-25 11:39:54] 2025-11-25 16:38:49,748 | INFO     | will attempt to kill all subprocesses of pid=3983713
[2025-11-25 11:39:54] 2025-11-25 16:38:50,220 | INFO     | process IDs to be killed: [3983713] (in reverse order)
[2025-11-25 11:39:54] 2025-11-25 16:38:50,333 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 11:39:54] 2025-11-25 16:38:50,333 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 11:39:54] 2025-11-25 16:38:50,347 | INFO     | did not find any defunct processes belonging to 3983713
[2025-11-25 11:39:54] 2025-11-25 16:38:50,360 | INFO     | did not find any defunct processes belonging to 3983713
[2025-11-25 11:39:54] 2025-11-25 16:38:50,361 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 11:39:54] 2025-11-25 16:38:50,361 | INFO     | ready for new job
[2025-11-25 11:39:54] 2025-11-25 16:38:50,361 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 11:39:54] 2025-11-25 16:38:50,368 | INFO     | ***************************************
[2025-11-25 11:39:54] 2025-11-25 16:38:50,368 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 11:39:54] 2025-11-25 16:38:50,368 | INFO     | ***************************************
[2025-11-25 11:39:54] 2025-11-25 16:38:50,368 | INFO     | 
[2025-11-25 11:39:54] 2025-11-25 16:38:50,371 | INFO     | architecture information:
[2025-11-25 11:39:54] 2025-11-25 16:38:50,372 | INFO     | executing command: cat /etc/os-release
[2025-11-25 11:39:54] 2025-11-25 16:38:50,390 | INFO     | cat /etc/os-release:
[2025-11-25 11:39:54] NAME="CentOS Linux"
[2025-11-25 11:39:54] VERSION="7 (Core)"
[2025-11-25 11:39:54] ID="centos"
[2025-11-25 11:39:54] ID_LIKE="rhel fedora"
[2025-11-25 11:39:54] VERSION_ID="7"
[2025-11-25 11:39:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 11:39:54] ANSI_COLOR="0;31"
[2025-11-25 11:39:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 11:39:54] HOME_URL="https://www.centos.org/"
[2025-11-25 11:39:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 11:39:54] 
[2025-11-25 11:39:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 11:39:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 11:39:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 11:39:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 11:39:54] 
[2025-11-25 11:39:54] 2025-11-25 16:38:50,391 | INFO     | ***************************************
[2025-11-25 11:39:54] 2025-11-25 16:38:50,894 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-25 11:39:54] 2025-11-25 16:38:50,942 | INFO     | sufficient remaining disk space (70230474752 B)
[2025-11-25 11:39:54] 2025-11-25 16:38:50,943 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 11:39:54] 2025-11-25 16:38:50,943 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 11:39:54] 2025-11-25 16:38:50,943 | INFO     | update_server=False
[2025-11-25 11:39:54] 2025-11-25 16:38:50,943 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 11:39:54] 2025-11-25 16:38:50,945 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 11:39:54] 2025-11-25 16:38:51,170 | INFO     | all data control threads have been joined
[2025-11-25 11:39:54] 2025-11-25 16:38:51,342 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 11:39:54] 2025-11-25 16:38:51,343 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 11:39:54] 2025-11-25 16:38:51,343 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:39:54] 2025-11-25 16:38:51,343 | INFO     | will abort loop
[2025-11-25 11:39:54] 2025-11-25 16:38:51,775 | INFO     | all job control threads have been joined
[2025-11-25 11:39:54] 2025-11-25 16:38:51,949 | INFO     | [job] retrieve thread has finished
[2025-11-25 11:39:54] 2025-11-25 16:38:52,176 | INFO     | [data] control thread has finished
[2025-11-25 11:39:54] 2025-11-25 16:38:52,179 | INFO     | all payload control threads have been joined
[2025-11-25 11:39:54] 2025-11-25 16:38:52,218 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 11:39:54] 2025-11-25 16:38:52,299 | INFO     | [payload] validate_post thread has finished
[2025-11-25 11:39:54] 2025-11-25 16:38:52,349 | INFO     | [job] job monitor thread has finished
[2025-11-25 11:39:54] 2025-11-25 16:38:52,450 | INFO     | [payload] failed_post thread has finished
[2025-11-25 11:39:54] 2025-11-25 16:38:52,492 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 11:39:54] 2025-11-25 16:38:52,492 | INFO     | [job] validate thread has finished
[2025-11-25 11:39:54] 2025-11-25 16:38:52,782 | INFO     | [job] control thread has finished
[2025-11-25 11:39:54] 2025-11-25 16:38:52,948 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 11:39:54] 2025-11-25 16:38:52,965 | INFO     | [data] copytool_out thread has finished
[2025-11-25 11:39:54] 2025-11-25 16:38:52,996 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 11:39:54] 2025-11-25 16:38:53,097 | INFO     | [data] copytool_in thread has finished
[2025-11-25 11:39:54] 2025-11-25 16:38:53,184 | INFO     | [payload] control thread has finished
[2025-11-25 11:39:54] 2025-11-25 16:38:53,737 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 11:39:54] 2025-11-25 16:38:54,747 | INFO     | [job] queue monitor thread has finished
[2025-11-25 11:39:54] 2025-11-25 16:38:56,957 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 11:39:54] 2025-11-25 16:39:01,969 | INFO     | job.realtimelogging is not enabled
[2025-11-25 11:39:54] 2025-11-25 16:39:02,975 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 11:39:54] 2025-11-25 16:39:20,527 | INFO     | PID=3956081 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 11:39:54] 2025-11-25 16:39:20,527 | INFO     | .. there are 24 such processes running
[2025-11-25 11:39:54] 2025-11-25 16:39:20,527 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 11:39:54] 2025-11-25 16:39:20,528 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 11:39:54] 2025-11-25 16:39:20,528 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 11:39:54] 2025-11-25 16:39:46,276 | INFO     | [monitor] cgroup control has ended
[2025-11-25 11:39:54] 2025-11-25 16:39:47,803 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140285936908096)>', '<ExcThread(monitor, started 140285292041984)>']
[2025-11-25 11:39:54] 2025-11-25 16:39:48,707 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 11:39:54] 2025-11-25 16:39:48,707 | INFO     | [monitor] control thread has ended
[2025-11-25 11:39:54] 2025-11-25 16:39:52,829 | INFO     | all workflow threads have been joined
[2025-11-25 11:39:54] 2025-11-25 16:39:52,829 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 11:39:54] 2025-11-25 16:39:52,829 | INFO     | traces error code: 0
[2025-11-25 11:39:54] 2025-11-25 16:39:52,830 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 11:39:54] 2025-11-25 16:39:53,162 [wrapper] ==== pilot stdout END ====
[2025-11-25 11:39:54] 2025-11-25 16:39:53,196 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 11:39:54] 2025-11-25 16:39:53,254 [wrapper] pilotpid: 3956081
[2025-11-25 11:39:54] 2025-11-25 16:39:53,273 [wrapper] Pilot exit status: 0
[2025-11-25 11:39:54] 2025-11-25 16:39:53,349 [wrapper] pandaids: 6895350619
[2025-11-25 11:39:54] 2025-11-25 16:39:53,563 [wrapper] cleanup supervisor_pilot 1417969 3956082
[2025-11-25 11:39:54] 2025-11-25 16:39:53,568 [wrapper] Test setup, not cleaning
[2025-11-25 11:39:54] 2025-11-25 16:39:53,571 [wrapper] apfmon messages muted
[2025-11-25 11:39:54] 2025-11-25 16:39:53,573 [wrapper] ==== wrapper stdout END ====
[2025-11-25 11:39:54] 2025-11-25 16:39:53,576 [wrapper] ==== wrapper stderr END ====
[2025-11-25 11:39:54]  *** Error codes and diagnostics ***
[2025-11-25 11:39:54]     "exeErrorCode": 0,
[2025-11-25 11:39:54]     "exeErrorDiag": "",
[2025-11-25 11:39:54]     "pilotErrorCode": 0,
[2025-11-25 11:39:54]     "pilotErrorDiag": "",
[2025-11-25 11:39:54]  *** Listing of results directory ***
[2025-11-25 11:39:54] total 1333016
[2025-11-25 11:39:54] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 16:27 pilot3.tar.gz
[2025-11-25 11:39:54] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 16:44 queuedata.json
[2025-11-25 11:39:54] -rwx------. 1 boincer umatlas     36292 Nov 22 16:46 runpilot2-wrapper.sh
[2025-11-25 11:39:54] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 11:39:54] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:00 run_atlas
[2025-11-25 11:39:54] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:00 job.xml
[2025-11-25 11:39:54] -rw-r--r--. 2 boincer umatlas 408817829 Nov 24 00:01 EVNT.47483658._000517.pool.root.1
[2025-11-25 11:39:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:01 start_atlas.sh
[2025-11-25 11:39:54] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:01 shared
[2025-11-25 11:39:54] -rw-r--r--. 2 boincer umatlas    590102 Nov 24 00:01 input.tar.gz
[2025-11-25 11:39:54] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:01 boinc_lockfile
[2025-11-25 11:39:54] -rw-r--r--. 1 boincer umatlas      2784 Nov 24 00:01 pandaJob.out
[2025-11-25 11:39:54] -rw-------. 1 boincer umatlas        57 Nov 24 00:01 setup.sh.local
[2025-11-25 11:39:54] -rw-------. 1 boincer umatlas    989786 Nov 24 00:02 agis_schedconf.cvmfs.json
[2025-11-25 11:39:54] drwx------. 5 boincer umatlas      4096 Nov 24 00:02 pilot3
[2025-11-25 11:39:54] -rw-r--r--. 1 boincer umatlas       533 Nov 25 11:26 boinc_task_state.xml
[2025-11-25 11:39:54] -rw-------. 1 boincer umatlas 915218980 Nov 25 11:37 HITS.47556137._005124.pool.root.1
[2025-11-25 11:39:54] -rw-------. 1 boincer umatlas      1072 Nov 25 11:38 memory_monitor_summary.json
[2025-11-25 11:39:54] -rw-r--r--. 1 boincer umatlas      6841 Nov 25 11:38 init_data.xml
[2025-11-25 11:39:54] -rw-------. 1 boincer umatlas   1516240 Nov 25 11:38 agis_ddmendpoints.agis.ALL.json
[2025-11-25 11:39:54] -rw-------. 1 boincer umatlas   3009223 Nov 25 11:38 log.47556137._005124.job.log.tgz.1
[2025-11-25 11:39:54] -rw-------. 1 boincer umatlas        95 Nov 25 11:38 pilot_heartbeat.json
[2025-11-25 11:39:54] -rw-------. 1 boincer umatlas      8670 Nov 25 11:38 heartbeat.json
[2025-11-25 11:39:54] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 11:39 boinc_mmap_file
[2025-11-25 11:39:54] -rw-r--r--. 1 boincer umatlas        29 Nov 25 11:39 wrapper_checkpoint.txt
[2025-11-25 11:39:54] -rw-------. 1 boincer umatlas      5082 Nov 25 11:39 pilotlog.txt
[2025-11-25 11:39:54] -rw-------. 1 boincer umatlas  15526218 Nov 25 11:39 log.47556137._005124.job.log.1
[2025-11-25 11:39:54] -rw-------. 1 boincer umatlas       353 Nov 25 11:39 output.list
[2025-11-25 11:39:54] -rw-r--r--. 1 boincer umatlas       620 Nov 25 11:39 runtime_log
[2025-11-25 11:39:54] -rw-------. 1 boincer umatlas  18554880 Nov 25 11:39 result.tar.gz
[2025-11-25 11:39:54] -rw-r--r--. 1 boincer umatlas      9344 Nov 25 11:39 runtime_log.err
[2025-11-25 11:39:54] -rw-------. 1 boincer umatlas       668 Nov 25 11:39 kyuMDmAcAh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLJIKDmVaVVDm.diag
[2025-11-25 11:39:54] -rw-r--r--. 1 boincer umatlas      2074 Nov 25 11:39 stderr.txt
[2025-11-25 11:39:54] HITS file was successfully produced:
[2025-11-25 11:39:54] -rw-------. 1 boincer umatlas 915218980 Nov 25 11:37 shared/HITS.pool.root.1
[2025-11-25 11:39:54]  *** Contents of shared directory: ***
[2025-11-25 11:39:54] total 1311736
[2025-11-25 11:39:54] -rw-r--r--. 2 boincer umatlas 408817829 Nov 24 00:01 ATLAS.root_0
[2025-11-25 11:39:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:01 start_atlas.sh
[2025-11-25 11:39:54] -rw-r--r--. 2 boincer umatlas    590102 Nov 24 00:01 input.tar.gz
[2025-11-25 11:39:54] -rw-------. 1 boincer umatlas 915218980 Nov 25 11:37 HITS.pool.root.1
[2025-11-25 11:39:54] -rw-------. 1 boincer umatlas  18554880 Nov 25 11:39 result.tar.gz
11:40:16 (3944464): run_atlas exited; CPU time 250627.209777
11:40:16 (3944464): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN