Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:53:54 (2428342): wrapper (7.7.26015): starting
20:53:54 (2428342): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 20:53:54] Arguments: --nthreads 12
[2025-11-23 20:53:54] Threads: 12
[2025-11-23 20:53:54] Checking for CVMFS
[2025-11-23 20:53:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 20:53:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 20:53:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 20:53:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 20:53:56] 2.11.5.0 2639569 25012 221148 153233 0 433 43427078 45568001 10911 130560 0 243410197 99.802 141998185 30074 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-23 20:53:56] CVMFS is ok
[2025-11-23 20:53:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 20:53:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 20:53:56] Further information can be found at the LHC@home message board.
[2025-11-23 20:53:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 20:53:56] Checking for apptainer binary...
[2025-11-23 20:53:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 20:53:56] Running /usr/bin/apptainer --version
[2025-11-23 20:53:56] apptainer version 1.4.1-1.el9
[2025-11-23 20:53:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 20:53:57] wns0026.triumf.lcg
[2025-11-23 20:53:57] apptainer works
[2025-11-23 20:53:57] Set ATHENA_PROC_NUMBER=12
[2025-11-23 20:53:57] Set ATHENA_CORE_NUMBER=12
[2025-11-23 20:53:57] Starting ATLAS job with PandaID=6895356236
[2025-11-23 20:53:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 21:00:42]  *** The last 200 lines of the pilot log: ***
[2025-11-23 21:00:42] 2025-11-24 05:00:23,765 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 21:00:42] 2025-11-24 05:00:23,766 | WARNING  | wrong length of table data, x=[1763960148.0, 1763960209.0, 1763960270.0], y=[1242.0, 781048.0, 598984.0] (must be same and length>=4)
[2025-11-23 21:00:42] 2025-11-24 05:00:23,766 | INFO     | could have reported an average CPU frequency of 2463 MHz (4 samples)
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | ..............................
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . Timing measurements:
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . get job = 0 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . initial setup = 4 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . payload setup = 11 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . stage-in = 0 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . payload execution = 155 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . stage-out = 1 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . log creation = 0 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | ..............................
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895356236/pilotlog.txt
[2025-11-23 21:00:42] 2025-11-24 05:00:23,782 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-23 21:00:42] - Log from pilotlog.txt -
[2025-11-23 21:00:42] 2025-11-24 05:00:23,764 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895356236/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 21:00:42] 2025-11-24 05:00:23,765 | INFO     | extracted standard info from prmon json
[2025-11-23 21:00:42] 2025-11-24 05:00:23,765 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 21:00:42] 2025-11-24 05:00:23,765 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 21:00:42] 2025-11-24 05:00:23,765 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-23 21:00:42] 2025-11-24 05:00:23,765 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 21:00:42] 2025-11-24 05:00:23,766 | WARNING  | wrong length of table data, x=[1763960148.0, 1763960209.0, 1763960270.0], y=[1242.0, 781048.0, 598984.0] (must be same and length>=4)
[2025-11-23 21:00:42] 2025-11-24 05:00:23,766 | INFO     | could have reported an average CPU frequency of 2463 MHz (4 samples)
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | ..............................
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . Timing measurements:
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . get job = 0 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . initial setup = 4 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . payload setup = 11 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . stage-in = 0 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . payload execution = 155 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . stage-out = 1 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . log creation = 0 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | ..............................
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895356236/pilotlog.txt
[2025-11-23 21:00:42] 2025-11-24 05:00:23,782 | WARNING  | 
[2025-11-23 21:00:42] [begin log extracts]
[2025-11-23 21:00:42] - Log from pilotlog.txt -
[2025-11-23 21:00:42] 2025-11-24 05:00:23,764 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6895356236/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 21:00:42] 2025-11-24 05:00:23,765 | INFO     | extracted standard info from prmon json
[2025-11-23 21:00:42] 2025-11-24 05:00:23,765 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 21:00:42] 2025-11-24 05:00:23,765 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 21:00:42] 2025-11-24 05:00:23,765 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-23 21:00:42] 2025-11-24 05:00:23,765 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-23 21:00:42] 2025-11-24 05:00:23,766 | WARNING  | wrong length of table data, x=[1763960148.0, 1763960209.0, 1763960270.0], y=[1242.0, 781048.0, 598984.0] (must be same and length>=4)
[2025-11-23 21:00:42] 2025-11-24 05:00:23,766 | INFO     | could have reported an average CPU frequency of 2463 MHz (4 samples)
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | ..............................
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . Timing measurements:
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . get job = 0 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . initial setup = 4 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . payload setup = 11 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . stage-in = 0 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . payload execution = 155 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . stage-out = 1 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | . log creation = 0 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | ..............................
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-23 21:00:42] 2025-11-24 05:00:23,767 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6895356236/pilotlog.txt
[2025-11-23 21:00:42] [end log extracts]
[2025-11-23 21:00:42] 2025-11-24 05:00:23,783 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-23 21:00:42] 2025-11-24 05:00:23,783 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-23 21:00:42] 2025-11-24 05:00:23,838 | INFO     | time since job start (348s) is within the limit (172800.0s)
[2025-11-23 21:00:42] 2025-11-24 05:00:23,867 | INFO     | 
[2025-11-23 21:00:42] 2025-11-24 05:00:23,867 | INFO     | job summary report
[2025-11-23 21:00:42] 2025-11-24 05:00:23,867 | INFO     | --------------------------------------------------
[2025-11-23 21:00:42] 2025-11-24 05:00:23,867 | INFO     | PanDA job id: 6895356236
[2025-11-23 21:00:42] 2025-11-24 05:00:23,867 | INFO     | task id: 47556149
[2025-11-23 21:00:42] 2025-11-24 05:00:23,867 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-23 20:57:55,502 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-23 21:00:42] 2025-11-24 05:00:23,867 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-23 21:00:42] 2025-11-24 05:00:23,868 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 21:00:42] 2025-11-24 05:00:23,868 | INFO     | pilot state: failed 
[2025-11-23 21:00:42] 2025-11-24 05:00:23,868 | INFO     | transexitcode: 65
[2025-11-23 21:00:42] 2025-11-24 05:00:23,868 | INFO     | exeerrorcode: 65
[2025-11-23 21:00:42] 2025-11-24 05:00:23,868 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-23 21:00:42] 2025-11-24 05:00:23,868 | INFO     | exitcode: 65
[2025-11-23 21:00:42] 2025-11-24 05:00:23,868 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-23 21:00:42] 2025-11-24 05:00:23,868 | INFO     | cpuconsumptiontime: 47 s
[2025-11-23 21:00:42] 2025-11-24 05:00:23,868 | INFO     | nevents: 0
[2025-11-23 21:00:42] 2025-11-24 05:00:23,868 | INFO     | neventsw: 0
[2025-11-23 21:00:42] 2025-11-24 05:00:23,868 | INFO     | pid: 2438598
[2025-11-23 21:00:42] 2025-11-24 05:00:23,868 | INFO     | pgrp: 2438598
[2025-11-23 21:00:42] 2025-11-24 05:00:23,868 | INFO     | corecount: 12
[2025-11-23 21:00:42] 2025-11-24 05:00:23,868 | INFO     | event service: False
[2025-11-23 21:00:42] 2025-11-24 05:00:23,868 | INFO     | sizes: {0: 2298581, 1: 2298780, 12: 2298780, 18: 2299070, 23: 2299098, 168: 2324575, 169: 2324679, 171: 2328997, 172: 2329025, 311: 2329191}
[2025-11-23 21:00:42] 2025-11-24 05:00:23,868 | INFO     | --------------------------------------------------
[2025-11-23 21:00:42] 2025-11-24 05:00:23,868 | INFO     | 
[2025-11-23 21:00:42] 2025-11-24 05:00:23,868 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-23 21:00:42] 2025-11-24 05:00:23,886 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 21:00:42] 2025-11-24 05:00:23,886 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 21:00:42] 2025-11-24 05:00:23,886 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 21:00:42] 2025-11-24 05:00:23,886 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 21:00:42] 2025-11-24 05:00:23,886 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 21:00:42] 2025-11-24 05:00:23,887 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 21:00:42] 2025-11-24 05:00:23,887 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 21:00:42] 2025-11-24 05:00:23,887 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 21:00:42] 2025-11-24 05:00:23,887 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 21:00:42] 2025-11-24 05:00:23,887 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 21:00:42] 2025-11-24 05:00:23,887 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 21:00:42] 2025-11-24 05:00:23,887 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 21:00:42] 2025-11-24 05:00:23,887 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 21:00:42] 2025-11-24 05:00:23,887 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 21:00:42] 2025-11-24 05:00:23,887 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 21:00:42] 2025-11-24 05:00:23,887 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 21:00:42] 2025-11-24 05:00:23,887 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 21:00:42] 2025-11-24 05:00:23,887 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 21:00:42] 2025-11-24 05:00:23,887 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 21:00:42] 2025-11-24 05:00:23,887 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 21:00:42] 2025-11-24 05:00:23,887 | INFO     | job 6895356236 has completed (purged errors)
[2025-11-23 21:00:42] 2025-11-24 05:00:23,888 | INFO     | overall cleanup function is called
[2025-11-23 21:00:42] 2025-11-24 05:00:24,896 | INFO     | --- collectZombieJob: --- 10, [2438598]
[2025-11-23 21:00:42] 2025-11-24 05:00:24,896 | INFO     | zombie collector waiting for pid 2438598
[2025-11-23 21:00:42] 2025-11-24 05:00:24,896 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 21:00:42] 2025-11-24 05:00:24,896 | INFO     | collected zombie processes
[2025-11-23 21:00:42] 2025-11-24 05:00:24,896 | INFO     | will attempt to kill all subprocesses of pid=2438598
[2025-11-23 21:00:42] 2025-11-24 05:00:25,134 | INFO     | process IDs to be killed: [2438598] (in reverse order)
[2025-11-23 21:00:42] 2025-11-24 05:00:25,190 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 21:00:42] 2025-11-24 05:00:25,190 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 21:00:42] 2025-11-24 05:00:25,196 | INFO     | did not find any defunct processes belonging to 2438598
[2025-11-23 21:00:42] 2025-11-24 05:00:25,202 | INFO     | did not find any defunct processes belonging to 2438598
[2025-11-23 21:00:42] 2025-11-24 05:00:25,203 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 21:00:42] 2025-11-24 05:00:25,203 | INFO     | ready for new job
[2025-11-23 21:00:42] 2025-11-24 05:00:25,203 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 21:00:42] 2025-11-24 05:00:25,204 | INFO     | ***************************************
[2025-11-23 21:00:42] 2025-11-24 05:00:25,204 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 21:00:42] 2025-11-24 05:00:25,204 | INFO     | ***************************************
[2025-11-23 21:00:42] 2025-11-24 05:00:25,204 | INFO     | 
[2025-11-23 21:00:42] 2025-11-24 05:00:25,206 | INFO     | architecture information:
[2025-11-23 21:00:42] 2025-11-24 05:00:25,207 | INFO     | executing command: cat /etc/os-release
[2025-11-23 21:00:42] 2025-11-24 05:00:25,220 | INFO     | cat /etc/os-release:
[2025-11-23 21:00:42] NAME="CentOS Linux"
[2025-11-23 21:00:42] VERSION="7 (Core)"
[2025-11-23 21:00:42] ID="centos"
[2025-11-23 21:00:42] ID_LIKE="rhel fedora"
[2025-11-23 21:00:42] VERSION_ID="7"
[2025-11-23 21:00:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 21:00:42] ANSI_COLOR="0;31"
[2025-11-23 21:00:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 21:00:42] HOME_URL="https://www.centos.org/"
[2025-11-23 21:00:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 21:00:42] 
[2025-11-23 21:00:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 21:00:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 21:00:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 21:00:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 21:00:42] 
[2025-11-23 21:00:42] 2025-11-24 05:00:25,220 | INFO     | ***************************************
[2025-11-23 21:00:42] 2025-11-24 05:00:25,724 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-23 21:00:42] 2025-11-24 05:00:25,739 | INFO     | sufficient remaining disk space (1763318956032 B)
[2025-11-23 21:00:42] 2025-11-24 05:00:25,739 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 21:00:42] 2025-11-24 05:00:25,739 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 21:00:42] 2025-11-24 05:00:25,739 | INFO     | update_server=False
[2025-11-23 21:00:42] 2025-11-24 05:00:25,739 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 21:00:42] 2025-11-24 05:00:25,739 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-23 21:00:42] 2025-11-24 05:00:25,740 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 21:00:42] 2025-11-24 05:00:25,740 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 21:00:42] 2025-11-24 05:00:25,740 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 21:00:42] 2025-11-24 05:00:25,740 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 21:00:42] 2025-11-24 05:00:25,740 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 21:00:42] 2025-11-24 05:00:25,740 | INFO     | aborting loop
[2025-11-23 21:00:42] 2025-11-24 05:00:26,149 | INFO     | all data control threads have been joined
[2025-11-23 21:00:42] 2025-11-24 05:00:26,378 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 21:00:42] 2025-11-24 05:00:26,746 | INFO     | [job] retrieve thread has finished
[2025-11-23 21:00:42] 2025-11-24 05:00:26,759 | INFO     | [job] queue monitor thread has finished
[2025-11-23 21:00:42] 2025-11-24 05:00:26,760 | INFO     | [job] job monitor thread has finished
[2025-11-23 21:00:42] 2025-11-24 05:00:26,930 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 21:00:42] 2025-11-24 05:00:26,944 | INFO     | all job control threads have been joined
[2025-11-23 21:00:42] 2025-11-24 05:00:26,992 | INFO     | all payload control threads have been joined
[2025-11-23 21:00:42] 2025-11-24 05:00:27,095 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 21:00:42] 2025-11-24 05:00:27,156 | INFO     | [data] control thread has finished
[2025-11-23 21:00:42] 2025-11-24 05:00:27,186 | INFO     | [data] copytool_in thread has finished
[2025-11-23 21:00:42] 2025-11-24 05:00:27,190 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 21:00:42] 2025-11-24 05:00:27,357 | INFO     | [payload] failed_post thread has finished
[2025-11-23 21:00:42] 2025-11-24 05:00:27,428 | INFO     | [job] validate thread has finished
[2025-11-23 21:00:42] 2025-11-24 05:00:27,688 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 21:00:42] 2025-11-24 05:00:27,903 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 21:00:42] 2025-11-24 05:00:27,950 | INFO     | [job] control thread has finished
[2025-11-23 21:00:42] 2025-11-24 05:00:27,998 | INFO     | [payload] control thread has finished
[2025-11-23 21:00:42] 2025-11-24 05:00:28,068 | INFO     | [payload] validate_post thread has finished
[2025-11-23 21:00:42] 2025-11-24 05:00:29,200 | INFO     | [data] copytool_out thread has finished
[2025-11-23 21:00:42] 2025-11-24 05:00:30,387 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 21:00:42] 2025-11-24 05:00:35,241 | INFO     | [monitor] cgroup control has ended
[2025-11-23 21:00:42] 2025-11-24 05:00:36,770 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140273759704896)>', '<ExcThread(monitor, started 140273212446464)>']
[2025-11-23 21:00:42] 2025-11-24 05:00:36,816 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 21:00:42] 2025-11-24 05:00:36,816 | INFO     | [monitor] control thread has ended
[2025-11-23 21:00:42] 2025-11-24 05:00:41,803 | INFO     | all workflow threads have been joined
[2025-11-23 21:00:42] 2025-11-24 05:00:41,804 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 21:00:42] 2025-11-24 05:00:41,804 | INFO     | traces error code: 0
[2025-11-23 21:00:42] 2025-11-24 05:00:41,804 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 21:00:42] 2025-11-24 05:00:42,013 [wrapper] ==== pilot stdout END ====
[2025-11-23 21:00:42] 2025-11-24 05:00:42,016 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 21:00:42] 2025-11-24 05:00:42,018 [wrapper] pilotpid: 2432008
[2025-11-23 21:00:42] 2025-11-24 05:00:42,020 [wrapper] Pilot exit status: 0
[2025-11-23 21:00:42] 2025-11-24 05:00:42,031 [wrapper] pandaids: 6895356236
[2025-11-23 21:00:42] 2025-11-24 05:00:42,067 [wrapper] cleanup supervisor_pilot 2432014 2432009
[2025-11-23 21:00:42] 2025-11-24 05:00:42,069 [wrapper] Test setup, not cleaning
[2025-11-23 21:00:42] 2025-11-24 05:00:42,072 [wrapper] apfmon messages muted
[2025-11-23 21:00:42] 2025-11-24 05:00:42,074 [wrapper] ==== wrapper stdout END ====
[2025-11-23 21:00:42] 2025-11-24 05:00:42,076 [wrapper] ==== wrapper stderr END ====
[2025-11-23 21:00:42]  *** Error codes and diagnostics ***
[2025-11-23 21:00:42]     "exeErrorCode": 65,
[2025-11-23 21:00:42]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-23 21:00:42]     "pilotErrorCode": 1305,
[2025-11-23 21:00:42]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-23 21:00:42]  *** Listing of results directory ***
[2025-11-23 21:00:42] total 405232
[2025-11-23 21:00:42] -rw-r--r--. 1 boinc boinc    576529 Nov 23 02:16 pilot3.tar.gz
[2025-11-23 21:00:42] -rw-r--r--. 1 boinc boinc      5112 Nov 23 02:46 queuedata.json
[2025-11-23 21:00:42] -rwx------. 1 boinc boinc     36292 Nov 23 02:47 runpilot2-wrapper.sh
[2025-11-23 21:00:42] -rw-r--r--. 1 boinc boinc       100 Nov 23 20:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 21:00:42] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 20:53 run_atlas
[2025-11-23 21:00:42] -rw-r--r--. 1 boinc boinc       105 Nov 23 20:53 job.xml
[2025-11-23 21:00:42] -rw-r--r--. 1 boinc boinc      6594 Nov 23 20:53 init_data.xml
[2025-11-23 21:00:42] -rw-r--r--. 2 boinc boinc 410714328 Nov 23 20:53 EVNT.47483658._001153.pool.root.1
[2025-11-23 21:00:42] -rw-r--r--. 2 boinc boinc     15847 Nov 23 20:53 start_atlas.sh
[2025-11-23 21:00:42] drwxrwx--x. 2 boinc boinc      4096 Nov 23 20:53 shared
[2025-11-23 21:00:42] -rw-r--r--. 2 boinc boinc    590099 Nov 23 20:53 input.tar.gz
[2025-11-23 21:00:42] -rw-r--r--. 1 boinc boinc         0 Nov 23 20:53 boinc_lockfile
[2025-11-23 21:00:42] -rw-r--r--. 1 boinc boinc      2784 Nov 23 20:53 pandaJob.out
[2025-11-23 21:00:42] -rw-------. 1 boinc boinc    989786 Nov 23 20:54 agis_schedconf.cvmfs.json
[2025-11-23 21:00:42] -rw-------. 1 boinc boinc   1526164 Nov 23 20:54 agis_ddmendpoints.agis.ALL.json
[2025-11-23 21:00:42] drwx------. 5 boinc boinc      4096 Nov 23 20:54 pilot3
[2025-11-23 21:00:42] -rw-r--r--. 1 boinc boinc       525 Nov 23 20:57 boinc_task_state.xml
[2025-11-23 21:00:42] -rw-------. 1 boinc boinc       994 Nov 23 20:57 memory_monitor_summary.json
[2025-11-23 21:00:42] -rw-------. 1 boinc boinc     49853 Nov 23 20:58 log.47556149._001399.job.log.tgz.1
[2025-11-23 21:00:42] -rw-------. 1 boinc boinc        95 Nov 23 20:59 pilot_heartbeat.json
[2025-11-23 21:00:42] -rw-------. 1 boinc boinc     10341 Nov 23 21:00 heartbeat.json
[2025-11-23 21:00:42] -rw-r--r--. 1 boinc boinc      8192 Nov 23 21:00 boinc_mmap_file
[2025-11-23 21:00:42] -rw-r--r--. 1 boinc boinc        23 Nov 23 21:00 wrapper_checkpoint.txt
[2025-11-23 21:00:42] -rw-------. 1 boinc boinc      4551 Nov 23 21:00 pilotlog.txt
[2025-11-23 21:00:42] -rw-------. 1 boinc boinc    109523 Nov 23 21:00 log.47556149._001399.job.log.1
[2025-11-23 21:00:42] -rw-------. 1 boinc boinc       186 Nov 23 21:00 output.list
[2025-11-23 21:00:42] -rw-r--r--. 1 boinc boinc       620 Nov 23 21:00 runtime_log
[2025-11-23 21:00:42] -rw-------. 1 boinc boinc    184320 Nov 23 21:00 result.tar.gz
[2025-11-23 21:00:42] -rw-r--r--. 1 boinc boinc      8636 Nov 23 21:00 runtime_log.err
[2025-11-23 21:00:42] -rw-------. 1 boinc boinc       645 Nov 23 21:00 88sKDm2nMh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFoKKDmuERUWn.diag
[2025-11-23 21:00:42] -rw-r--r--. 1 boinc boinc     22530 Nov 23 21:00 stderr.txt
[2025-11-23 21:00:42] No HITS result produced
[2025-11-23 21:00:42]  *** Contents of shared directory: ***
[2025-11-23 21:00:42] total 401872
[2025-11-23 21:00:42] -rw-r--r--. 2 boinc boinc 410714328 Nov 23 20:53 ATLAS.root_0
[2025-11-23 21:00:42] -rw-r--r--. 2 boinc boinc     15847 Nov 23 20:53 start_atlas.sh
[2025-11-23 21:00:42] -rw-r--r--. 2 boinc boinc    590099 Nov 23 20:53 input.tar.gz
[2025-11-23 21:00:42] -rw-------. 1 boinc boinc    184320 Nov 23 21:00 result.tar.gz
21:00:43 (2428342): run_atlas exited; CPU time 51.683866
21:00:43 (2428342): called boinc_finish(0)

</stderr_txt>
]]>

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