Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:29 (2291559): wrapper (7.7.26015): starting
00:02:29 (2291559): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 00:02:29] Arguments: --nthreads 8
[2025-11-24 00:02:29] Threads: 8
[2025-11-24 00:02:29] Checking for CVMFS
[2025-11-24 00:02:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 00:02:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 00:02:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 00:02:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 00:02:30] 2.13.2.0 14352 31041 191504 153233 2 666 26208500 40960001 29092 16776704 0 244649957 99.679 192368448 47772 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 00:02:30] CVMFS is ok
[2025-11-24 00:02:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 00:02:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 00:02:30] Further information can be found at the LHC@home message board.
[2025-11-24 00:02:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 00:02:30] Checking for apptainer binary...
[2025-11-24 00:02:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 00:02:30] Running /usr/bin/apptainer --version
[2025-11-24 00:02:31] apptainer version 1.4.4-1.el9
[2025-11-24 00:02:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 00:02:32] c-208-36.aglt2.org
[2025-11-24 00:02:32] apptainer works
[2025-11-24 00:02:32] Set ATHENA_PROC_NUMBER=8
[2025-11-24 00:02:32] Set ATHENA_CORE_NUMBER=8
[2025-11-24 00:02:32] Starting ATLAS job with PandaID=6895338717
[2025-11-24 00:02:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 13:03:08]  *** The last 200 lines of the pilot log: ***
[2025-11-24 13:03:08] 2025-11-24 18:02:00,281 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:03:08] 2025-11-24 18:02:01,876 | INFO     | time since job start (46701s) is within the limit (172800.0s)
[2025-11-24 13:03:08] 2025-11-24 18:02:02,788 | INFO     | monitor loop #3006: job 0:6895338717 is in state 'finished'
[2025-11-24 13:03:08] 2025-11-24 18:02:02,788 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:03:08] 2025-11-24 18:02:03,886 | INFO     | time since job start (46703s) is within the limit (172800.0s)
[2025-11-24 13:03:08] 2025-11-24 18:02:05,293 | INFO     | monitor loop #3007: job 0:6895338717 is in state 'finished'
[2025-11-24 13:03:08] 2025-11-24 18:02:05,293 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:03:08] 2025-11-24 18:02:05,893 | INFO     | time since job start (46705s) is within the limit (172800.0s)
[2025-11-24 13:03:08] 2025-11-24 18:02:07,802 | INFO     | monitor loop #3008: job 0:6895338717 is in state 'finished'
[2025-11-24 13:03:08] 2025-11-24 18:02:07,802 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:03:08] 2025-11-24 18:02:07,900 | INFO     | time since job start (46707s) is within the limit (172800.0s)
[2025-11-24 13:03:08] 2025-11-24 18:02:09,907 | INFO     | time since job start (46709s) is within the limit (172800.0s)
[2025-11-24 13:03:08] 2025-11-24 18:02:10,308 | INFO     | monitor loop #3009: job 0:6895338717 is in state 'finished'
[2025-11-24 13:03:08] 2025-11-24 18:02:10,308 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:03:08] 2025-11-24 18:02:11,923 | INFO     | time since job start (46711s) is within the limit (172800.0s)
[2025-11-24 13:03:08] 2025-11-24 18:02:12,813 | INFO     | monitor loop #3010: job 0:6895338717 is in state 'finished'
[2025-11-24 13:03:08] 2025-11-24 18:02:12,813 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:03:08] 2025-11-24 18:02:13,577 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-24 13:03:08] 2025-11-24 18:02:13,596 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3786.8701406249997
[2025-11-24 13:03:08] 2025-11-24 18:02:13,644 | INFO     | using path: /tmp/boinchome/slots/11/PanDA_Pilot-6895338717/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 13:03:08] 2025-11-24 18:02:13,644 | INFO     | extracted standard info from prmon json
[2025-11-24 13:03:08] 2025-11-24 18:02:13,644 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 13:03:08] 2025-11-24 18:02:13,645 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 13:03:08] 2025-11-24 18:02:13,659 | INFO     | fitting pss+swap vs Time
[2025-11-24 13:03:08] 2025-11-24 18:02:13,660 | INFO     | sum of square deviations: 138259859106.28677
[2025-11-24 13:03:08] 2025-11-24 18:02:13,675 | INFO     | sum of deviations: -82362202702.01352
[2025-11-24 13:03:08] 2025-11-24 18:02:13,675 | INFO     | mean x: 1763984000.6479058
[2025-11-24 13:03:08] 2025-11-24 18:02:13,675 | INFO     | mean y: 2776880.022251309
[2025-11-24 13:03:08] 2025-11-24 18:02:13,675 | INFO     | intersect: 1053592415.0849899
[2025-11-24 13:03:08] 2025-11-24 18:02:13,676 | INFO     | chi2: 24.45163836028192
[2025-11-24 13:03:08] 2025-11-24 18:02:13,676 | INFO     | sum of square deviations: 135563873082.90915
[2025-11-24 13:03:08] 2025-11-24 18:02:13,692 | INFO     | sum of deviations: 160822224414.99994
[2025-11-24 13:03:08] 2025-11-24 18:02:13,692 | INFO     | mean x: 1763983848.1818182
[2025-11-24 13:03:08] 2025-11-24 18:02:13,692 | INFO     | mean y: 2790628.8260869565
[2025-11-24 13:03:08] 2025-11-24 18:02:13,692 | INFO     | intersect: -2089859867.5434854
[2025-11-24 13:03:08] 2025-11-24 18:02:13,693 | INFO     | chi2: 20.957330555408063
[2025-11-24 13:03:08] 2025-11-24 18:02:13,693 | INFO     | current chi2=20.957330555408063 (change=14.290689864568925 %)
[2025-11-24 13:03:08] 2025-11-24 18:02:13,693 | INFO     | right removable region: 758
[2025-11-24 13:03:08] 2025-11-24 18:02:13,694 | INFO     | sum of square deviations: 135561473952.90913
[2025-11-24 13:03:08] 2025-11-24 18:02:13,708 | INFO     | sum of deviations: -338342725453.6376
[2025-11-24 13:03:08] 2025-11-24 18:02:13,708 | INFO     | mean x: 1763984153.1818182
[2025-11-24 13:03:08] 2025-11-24 18:02:13,709 | INFO     | mean y: 2791338.2292490117
[2025-11-24 13:03:08] 2025-11-24 18:02:13,709 | INFO     | intersect: 4405452276.0403
[2025-11-24 13:03:08] 2025-11-24 18:02:13,709 | INFO     | chi2: 21.397908398228598
[2025-11-24 13:03:08] 2025-11-24 18:02:13,709 | INFO     | current chi2=21.397908398228598 (change=12.488856235554568 %)
[2025-11-24 13:03:08] 2025-11-24 18:02:13,715 | INFO     | left removable region: 10
[2025-11-24 13:03:08] 2025-11-24 18:02:13,715 | INFO     | sum of square deviations: 129752121256.25
[2025-11-24 13:03:08] 2025-11-24 18:02:13,726 | INFO     | sum of deviations: -108378053719.99956
[2025-11-24 13:03:08] 2025-11-24 18:02:13,726 | INFO     | mean x: 1763984122.75
[2025-11-24 13:03:08] 2025-11-24 18:02:13,726 | INFO     | mean y: 2811362.743315508
[2025-11-24 13:03:08] 2025-11-24 18:02:13,726 | INFO     | intersect: 1476214372.7724638
[2025-11-24 13:03:08] 2025-11-24 18:02:13,727 | INFO     | chi2: 17.145563558408046
[2025-11-24 13:03:08] 2025-11-24 18:02:13,731 | INFO     | current memory leak: -0.84 B/s (using 748 data points, chi2=17.15)
[2025-11-24 13:03:08] 2025-11-24 18:02:13,732 | INFO     | could have reported an average CPU frequency of 3785 MHz (29 samples)
[2025-11-24 13:03:08] 2025-11-24 18:02:13,732 | INFO     | ..............................
[2025-11-24 13:03:08] 2025-11-24 18:02:13,732 | INFO     | . Timing measurements:
[2025-11-24 13:03:08] 2025-11-24 18:02:13,732 | INFO     | . get job = 0 s
[2025-11-24 13:03:08] 2025-11-24 18:02:13,732 | INFO     | . initial setup = 3 s
[2025-11-24 13:03:08] 2025-11-24 18:02:13,732 | INFO     | . payload setup = 44 s
[2025-11-24 13:03:08] 2025-11-24 18:02:13,732 | INFO     | . stage-in = 0 s
[2025-11-24 13:03:08] 2025-11-24 18:02:13,732 | INFO     | . payload execution = 46571 s
[2025-11-24 13:03:08] 2025-11-24 18:02:13,732 | INFO     | . stage-out = 5 s
[2025-11-24 13:03:08] 2025-11-24 18:02:13,732 | INFO     | . log creation = 2 s
[2025-11-24 13:03:08] 2025-11-24 18:02:13,732 | INFO     | ..............................
[2025-11-24 13:03:08] 2025-11-24 18:02:13,840 | INFO     | 
[2025-11-24 13:03:08] 2025-11-24 18:02:13,840 | INFO     | job summary report
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | --------------------------------------------------
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | PanDA job id: 6895338717
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | task id: 47556137
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | errors: (none)
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | pilot state: finished 
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | transexitcode: 0
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | exeerrorcode: 0
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | exeerrordiag: 
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | exitcode: 0
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | exitmsg: OK
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | cpuconsumptiontime: 140040 s
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | nevents: 1000
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | neventsw: 0
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | pid: 2393386
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | pgrp: 2393386
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | corecount: 8
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | event service: False
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | sizes: {0: 2298757, 1: 2298757, 11: 2298785, 22: 2298813, 23: 2299103, 33: 2299131, 46620: 2346307, 46626: 2356094, 46627: 2356150, 46660: 2356396}
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | --------------------------------------------------
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | 
[2025-11-24 13:03:08] 2025-11-24 18:02:13,841 | INFO     | executing command: ls -lF /tmp/boinchome/slots/11
[2025-11-24 13:03:08] 2025-11-24 18:02:13,902 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 13:03:08] 2025-11-24 18:02:13,902 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 13:03:08] 2025-11-24 18:02:13,902 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 13:03:08] 2025-11-24 18:02:13,902 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 13:03:08] 2025-11-24 18:02:13,902 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 13:03:08] 2025-11-24 18:02:13,902 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 13:03:08] 2025-11-24 18:02:13,902 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 13:03:08] 2025-11-24 18:02:13,903 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 13:03:08] 2025-11-24 18:02:13,903 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 13:03:08] 2025-11-24 18:02:13,903 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 13:03:08] 2025-11-24 18:02:13,903 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 13:03:08] 2025-11-24 18:02:13,903 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 13:03:08] 2025-11-24 18:02:13,903 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 13:03:08] 2025-11-24 18:02:13,903 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 13:03:08] 2025-11-24 18:02:13,903 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 13:03:08] 2025-11-24 18:02:13,903 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 13:03:08] 2025-11-24 18:02:13,903 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 13:03:08] 2025-11-24 18:02:13,903 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 13:03:08] 2025-11-24 18:02:13,903 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 13:03:08] 2025-11-24 18:02:13,903 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 13:03:08] 2025-11-24 18:02:13,903 | INFO     | job 6895338717 has completed (purged errors)
[2025-11-24 13:03:08] 2025-11-24 18:02:13,903 | INFO     | overall cleanup function is called
[2025-11-24 13:03:08] 2025-11-24 18:02:14,933 | INFO     | --- collectZombieJob: --- 10, [2393386]
[2025-11-24 13:03:08] 2025-11-24 18:02:14,933 | INFO     | zombie collector waiting for pid 2393386
[2025-11-24 13:03:08] 2025-11-24 18:02:14,933 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 13:03:08] 2025-11-24 18:02:14,933 | INFO     | collected zombie processes
[2025-11-24 13:03:08] 2025-11-24 18:02:14,933 | INFO     | will attempt to kill all subprocesses of pid=2393386
[2025-11-24 13:03:08] 2025-11-24 18:02:17,042 | INFO     | process IDs to be killed: [2393386] (in reverse order)
[2025-11-24 13:03:08] 2025-11-24 18:02:18,063 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 13:03:08] 2025-11-24 18:02:18,063 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 13:03:08] 2025-11-24 18:02:18,084 | INFO     | did not find any defunct processes belonging to 2393386
[2025-11-24 13:03:08] 2025-11-24 18:02:18,114 | INFO     | did not find any defunct processes belonging to 2393386
[2025-11-24 13:03:08] 2025-11-24 18:02:18,123 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 13:03:08] 2025-11-24 18:02:18,123 | INFO     | ready for new job
[2025-11-24 13:03:08] 2025-11-24 18:02:18,123 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 13:03:08] 2025-11-24 18:02:18,125 | INFO     | ***************************************
[2025-11-24 13:03:08] 2025-11-24 18:02:18,125 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 13:03:08] 2025-11-24 18:02:18,125 | INFO     | ***************************************
[2025-11-24 13:03:08] 2025-11-24 18:02:18,125 | INFO     | 
[2025-11-24 13:03:08] 2025-11-24 18:02:18,142 | INFO     | architecture information:
[2025-11-24 13:03:08] 2025-11-24 18:02:18,151 | INFO     | executing command: cat /etc/os-release
[2025-11-24 13:03:08] 2025-11-24 18:02:18,276 | INFO     | cat /etc/os-release:
[2025-11-24 13:03:08] NAME="CentOS Linux"
[2025-11-24 13:03:08] VERSION="7 (Core)"
[2025-11-24 13:03:08] ID="centos"
[2025-11-24 13:03:08] ID_LIKE="rhel fedora"
[2025-11-24 13:03:08] VERSION_ID="7"
[2025-11-24 13:03:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 13:03:08] ANSI_COLOR="0;31"
[2025-11-24 13:03:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 13:03:08] HOME_URL="https://www.centos.org/"
[2025-11-24 13:03:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 13:03:08] 
[2025-11-24 13:03:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 13:03:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 13:03:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 13:03:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 13:03:08] 
[2025-11-24 13:03:08] 2025-11-24 18:02:18,276 | INFO     | ***************************************
[2025-11-24 13:03:08] 2025-11-24 18:02:18,780 | INFO     | executing command: df -mP /tmp/boinchome/slots/11
[2025-11-24 13:03:08] 2025-11-24 18:02:18,829 | INFO     | sufficient remaining disk space (160705806336 B)
[2025-11-24 13:03:08] 2025-11-24 18:02:18,829 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 13:03:08] 2025-11-24 18:02:18,829 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 13:03:08] 2025-11-24 18:02:18,830 | INFO     | update_server=False
[2025-11-24 13:03:08] 2025-11-24 18:02:18,830 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 13:03:08] 2025-11-24 18:02:18,831 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 13:03:08] 2025-11-24 18:02:18,835 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 13:03:08] 2025-11-24 18:02:18,856 | INFO     | all data control threads have been joined
[2025-11-24 13:03:08] 2025-11-24 18:02:18,879 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:03:08] 2025-11-24 18:02:18,886 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:03:08] 2025-11-24 18:02:18,886 | INFO     | aborting loop
[2025-11-24 13:03:08] 2025-11-24 18:02:18,922 | INFO     | all job control threads have been joined
[2025-11-24 13:03:08] 2025-11-24 18:02:19,659 | INFO     | all payload control threads have been joined
[2025-11-24 13:03:08] 2025-11-24 18:02:19,836 | INFO     | [job] retrieve thread has finished
[2025-11-24 13:03:08] 2025-11-24 18:02:19,862 | INFO     | [data] control thread has finished
[2025-11-24 13:03:08] 2025-11-24 18:02:19,885 | INFO     | [job] queue monitor thread has finished
[2025-11-24 13:03:08] 2025-11-24 18:02:19,892 | INFO     | [job] job monitor thread has finished
[2025-11-24 13:03:08] 2025-11-24 18:02:19,927 | INFO     | [job] control thread has finished
[2025-11-24 13:03:08] 2025-11-24 18:02:20,004 | INFO     | [job] validate thread has finished
[2025-11-24 13:03:08] 2025-11-24 18:02:20,110 | INFO     | [payload] validate_post thread has finished
[2025-11-24 13:03:08] 2025-11-24 18:02:20,198 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 13:03:08] 2025-11-24 18:02:20,311 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 13:03:08] 2025-11-24 18:02:20,327 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 13:03:08] 2025-11-24 18:02:20,390 | INFO     | [data] copytool_in thread has finished
[2025-11-24 13:03:08] 2025-11-24 18:02:20,665 | INFO     | [payload] control thread has finished
[2025-11-24 13:03:08] 2025-11-24 18:02:20,700 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 13:03:08] 2025-11-24 18:02:20,844 | INFO     | [data] copytool_out thread has finished
[2025-11-24 13:03:08] 2025-11-24 18:02:21,334 | INFO     | [payload] failed_post thread has finished
[2025-11-24 13:03:08] 2025-11-24 18:02:22,840 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 13:03:08] 2025-11-24 18:02:46,066 | INFO     | PID=2316136 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-24 13:03:08] 2025-11-24 18:02:46,069 | INFO     | .. there are 30 such processes running
[2025-11-24 13:03:08] 2025-11-24 18:02:46,069 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 13:03:08] 2025-11-24 18:02:46,069 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 13:03:08] 2025-11-24 18:02:46,069 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 13:03:08] 2025-11-24 18:03:00,982 | INFO     | [monitor] cgroup control has ended
[2025-11-24 13:03:08] 2025-11-24 18:03:01,802 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140396640843584)>', '<ExcThread(monitor, started 140396122314496)>']
[2025-11-24 13:03:08] 2025-11-24 18:03:02,218 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 13:03:08] 2025-11-24 18:03:02,218 | INFO     | [monitor] control thread has ended
[2025-11-24 13:03:08] 2025-11-24 18:03:06,828 | INFO     | all workflow threads have been joined
[2025-11-24 13:03:08] 2025-11-24 18:03:06,828 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 13:03:08] 2025-11-24 18:03:06,828 | INFO     | traces error code: 0
[2025-11-24 13:03:08] 2025-11-24 18:03:06,828 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 13:03:08] 2025-11-24 18:03:07,035 [wrapper] ==== pilot stdout END ====
[2025-11-24 13:03:08] 2025-11-24 18:03:07,048 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 13:03:08] 2025-11-24 18:03:07,062 [wrapper] pilotpid: 2316136
[2025-11-24 13:03:08] 2025-11-24 18:03:07,086 [wrapper] Pilot exit status: 0
[2025-11-24 13:03:08] 2025-11-24 18:03:07,181 [wrapper] pandaids: 6895338717
[2025-11-24 13:03:08] 2025-11-24 18:03:07,608 [wrapper] cleanup supervisor_pilot 1253390 2316137
[2025-11-24 13:03:08] 2025-11-24 18:03:07,640 [wrapper] Test setup, not cleaning
[2025-11-24 13:03:08] 2025-11-24 18:03:07,660 [wrapper] apfmon messages muted
[2025-11-24 13:03:08] 2025-11-24 18:03:07,681 [wrapper] ==== wrapper stdout END ====
[2025-11-24 13:03:08] 2025-11-24 18:03:07,706 [wrapper] ==== wrapper stderr END ====
[2025-11-24 13:03:08]  *** Error codes and diagnostics ***
[2025-11-24 13:03:08]     "exeErrorCode": 0,
[2025-11-24 13:03:08]     "exeErrorDiag": "",
[2025-11-24 13:03:08]     "pilotErrorCode": 0,
[2025-11-24 13:03:08]     "pilotErrorDiag": "",
[2025-11-24 13:03:08]  *** Listing of results directory ***
[2025-11-24 13:03:08] total 1313184
[2025-11-24 13:03:08] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 04:55 pilot3.tar.gz
[2025-11-24 13:03:08] -rwx------. 1 boincer umatlas     36292 Nov 22 05:00 runpilot2-wrapper.sh
[2025-11-24 13:03:08] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 05:00 queuedata.json
[2025-11-24 13:03:08] -rw-r--r--. 1 boincer umatlas       100 Nov 24 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 13:03:08] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 00:02 run_atlas
[2025-11-24 13:03:08] -rw-r--r--. 1 boincer umatlas       105 Nov 24 00:02 job.xml
[2025-11-24 13:03:08] -rw-r--r--. 2 boincer umatlas 407236038 Nov 24 00:02 EVNT.47483658._000339.pool.root.1
[2025-11-24 13:03:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:02 start_atlas.sh
[2025-11-24 13:03:08] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 00:02 shared
[2025-11-24 13:03:08] -rw-r--r--. 2 boincer umatlas    590100 Nov 24 00:02 input.tar.gz
[2025-11-24 13:03:08] -rw-r--r--. 1 boincer umatlas         0 Nov 24 00:02 boinc_lockfile
[2025-11-24 13:03:08] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 00:02 pandaJob.out
[2025-11-24 13:03:08] -rw-------. 1 boincer umatlas        57 Nov 24 00:02 setup.sh.local
[2025-11-24 13:03:08] -rw-------. 1 boincer umatlas    989786 Nov 24 00:03 agis_schedconf.cvmfs.json
[2025-11-24 13:03:08] drwx------. 5 boincer umatlas      4096 Nov 24 00:03 pilot3
[2025-11-24 13:03:08] -rw-r--r--. 1 boincer umatlas       532 Nov 24 12:24 boinc_task_state.xml
[2025-11-24 13:03:08] -rw-r--r--. 1 boincer umatlas      7174 Nov 24 12:58 init_data.xml
[2025-11-24 13:03:08] -rw-------. 1 boincer umatlas 917227077 Nov 24 13:00 HITS.47556137._003353.pool.root.1
[2025-11-24 13:03:08] -rw-------. 1 boincer umatlas      1075 Nov 24 13:01 memory_monitor_summary.json
[2025-11-24 13:03:08] -rw-------. 1 boincer umatlas   1516227 Nov 24 13:01 agis_ddmendpoints.agis.ALL.json
[2025-11-24 13:03:08] -rw-------. 1 boincer umatlas   1974002 Nov 24 13:01 log.47556137._003353.job.log.tgz.1
[2025-11-24 13:03:08] -rw-------. 1 boincer umatlas        95 Nov 24 13:02 pilot_heartbeat.json
[2025-11-24 13:03:08] -rw-------. 1 boincer umatlas      8636 Nov 24 13:02 heartbeat.json
[2025-11-24 13:03:08] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 13:03 boinc_mmap_file
[2025-11-24 13:03:08] -rw-r--r--. 1 boincer umatlas        28 Nov 24 13:03 wrapper_checkpoint.txt
[2025-11-24 13:03:08] -rw-------. 1 boincer umatlas      4826 Nov 24 13:03 pilotlog.txt
[2025-11-24 13:03:08] -rw-------. 1 boincer umatlas   6184065 Nov 24 13:03 log.47556137._003353.job.log.1
[2025-11-24 13:03:08] -rw-------. 1 boincer umatlas       353 Nov 24 13:03 output.list
[2025-11-24 13:03:08] -rw-r--r--. 1 boincer umatlas       620 Nov 24 13:03 runtime_log
[2025-11-24 13:03:08] -rw-------. 1 boincer umatlas   8181760 Nov 24 13:03 result.tar.gz
[2025-11-24 13:03:08] -rw-------. 1 boincer umatlas       666 Nov 24 13:03 vSMLDmSbzg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmS6JKDmPmWsJm.diag
[2025-11-24 13:03:08] -rw-r--r--. 1 boincer umatlas      9361 Nov 24 13:03 runtime_log.err
[2025-11-24 13:03:08] -rw-r--r--. 1 boincer umatlas     21824 Nov 24 13:03 stderr.txt
[2025-11-24 13:03:08] HITS file was successfully produced:
[2025-11-24 13:03:08] -rw-------. 1 boincer umatlas 917227077 Nov 24 13:00 shared/HITS.pool.root.1
[2025-11-24 13:03:08]  *** Contents of shared directory: ***
[2025-11-24 13:03:08] total 1302020
[2025-11-24 13:03:08] -rw-r--r--. 2 boincer umatlas 407236038 Nov 24 00:02 ATLAS.root_0
[2025-11-24 13:03:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 00:02 start_atlas.sh
[2025-11-24 13:03:08] -rw-r--r--. 2 boincer umatlas    590100 Nov 24 00:02 input.tar.gz
[2025-11-24 13:03:08] -rw-------. 1 boincer umatlas 917227077 Nov 24 13:00 HITS.pool.root.1
[2025-11-24 13:03:08] -rw-------. 1 boincer umatlas   8181760 Nov 24 13:03 result.tar.gz
13:03:10 (2291559): run_atlas exited; CPU time 140675.521108
13:03:10 (2291559): called boinc_finish(0)

</stderr_txt>
]]>

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